Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006270

Physical Location & Seq

Genomic Coordinates Reverse (-)

14375230 .. 14375987

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0093200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAACTCTTTCAGAATCGACTCGAGGGAAAAAATTTCTTCGGAGGCAAAAATGGGTTTCGAAATCCAAGAAGAATTCAGGCCGATTACTCCAATCCGAGTAGTTCCAGTTCAGCATCCAACTGTAAACTCAACAGAAGGTGCTCTTGAAGAGTGCCTTACACCCAAGTCACCTGCAGCTCGCATGATCTTGAAGCAGCCGTTGGTGTGTCCACCAGCTCCCAAGAAACCACCCCAACCTAGAAGAAAGTTGAGGTCTCCATCCAAAGAACTTTTTAAGGTTCCAGACGACTTTGCATCGGTGTTGAGGGTGATTAGTACTAGTGCTGCTCCTACCAAGAAGATCAGAGCCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

118

Amino Acids

13.16

Weight (kDa)

10.08

Isoelectric Point (pI)

74.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01790 AT3G01790 AT3G01790
fragaria_vesca	FvH4_6g53020
malus_domestica	MD17G1015300.v1.1
prunus_persica	Prupe.3G148400_v2.0.a1 Prupe.3G148400_v2.0.a1 Prupe.3G148400_v2.0.a1
pyrus_communis	pycom17g01250
rosa_chinensis	RchiOBHm_Chr2g0174761 RchiOBHm_Chr4g0409361
rosa_laevigata	RLG00000008566 RLG00000022293
rosa_multiflora	Rmu_sc0023882.1_g000001 Rmu_sc0041666.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077760 Rroxscaffold_5G00353880
rosa_rugosa	Rorug02G0579300 Rorug04G0093200
rosa_samantha	Rh2BG671600 Rh2CG634700 Rh2DG685000 Rh4AG155800 Rh4CG165000 Rh4DG148800
rosa_wichuraiana	Rw2G054130 Rw4G012750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	181
Acc36I	ACCTGC	1 cut(s)	181
AcsI	RAATTY	2 cut(s)	33, 74
AfaI	GTAC	1 cut(s)	319
AgsI	TTSAA	2 cut(s)	149, 193
AhlI	ACTAGT	1 cut(s)	320
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	2 cut(s)	179, 218
AluI	AGCT	2 cut(s)	179, 218
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	261
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	3 cut(s)	176, 196, 326
ApoI	RAATTY	2 cut(s)	33, 74
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuHPI	GGTGA	2 cut(s)	162, 322
AsuII	TTCGAA	1 cut(s)	60
AvaI	CYCGRG	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	3 cut(s)	188, 208, 313
BccI	CCATC	1 cut(s)	268
BceAI	ACGGC	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	261
BcuI	ACTAGT	1 cut(s)	320
BfaI	CTAG	2 cut(s)	240, 321
BfmI	CTRYAG	1 cut(s)	174
BfuAI	ACCTGC	1 cut(s)	181
BisI	GCNGC	3 cut(s)	177, 197, 327
BlsI	GCNGC	3 cut(s)	178, 198, 328
BmcAI	AGTACT	1 cut(s)	319
BmeT110I	CYCGRG	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	282
BmsI	GCATC	2 cut(s)	124, 305
Bpu14I	TTCGAA	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	261
Bse1I	ACTGG	2 cut(s)	107, 351
BseGI	GGATG	2 cut(s)	115, 260
BseNI	ACTGG	2 cut(s)	107, 351
BseXI	GCAGC	3 cut(s)	188, 208, 313
BshFI	GGCC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	82
Bso31I	GGTCTC	1 cut(s)	261
BsoBI	CYCGRG	1 cut(s)	22
Bsp119I	TTCGAA	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	186, 342
BspANI	GGCC	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	282
BspMAI	CTGCAG	1 cut(s)	178
BspMI	ACCTGC	1 cut(s)	181
BspT104I	TTCGAA	1 cut(s)	60
BspTNI	GGTCTC	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	107, 351
BssMI	GATC	2 cut(s)	186, 342
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	144
BstBI	TTCGAA	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	181
BstF5I	GGATG	2 cut(s)	115, 260
BstKTI	GATC	2 cut(s)	189, 345
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	2 cut(s)	186, 342
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	3 cut(s)	188, 208, 313
BsuRI	GGCC	1 cut(s)	82
BtsCI	GGATG	2 cut(s)	115, 260
BveI	ACCTGC	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	5 cut(s)	82, 179, 199, 218, 350
CviKI_1	RGCY	5 cut(s)	82, 179, 199, 218, 350
CviQI	GTAC	1 cut(s)	318
DpnI	GATC	2 cut(s)	188, 344
DpnII	GATC	2 cut(s)	186, 342
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	74
FaeI	CATG	1 cut(s)	187
FaiI	YATR	1 cut(s)	185
FalI	AAGNNNNNCTT	4 cut(s)	129, 161, 141, 173
FatI	CATG	1 cut(s)	183
Fnu4HI	GCNGC	3 cut(s)	177, 197, 327
FokI	GGATG	2 cut(s)	102, 247
Fsp4HI	GCNGC	3 cut(s)	177, 197, 327
FspBI	CTAG	2 cut(s)	240, 321
GluI	GCNGC	3 cut(s)	177, 197, 327
HaeIII	GGCC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	187
HinfI	GANTC	2 cut(s)	15, 20
HphI	GGTGA	2 cut(s)	162, 322
Hpy166II	GTNNAC	2 cut(s)	127, 212
Hpy188I	TCNGA	4 cut(s)	14, 43, 98, 347
Hpy188III	TCNNGA	3 cut(s)	146, 190, 284
Hpy8I	GTNNAC	2 cut(s)	127, 212
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	176, 296
Hsp92II	CATG	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	186, 342
LmnI	GCTCC	2 cut(s)	223, 334
LpnPI	CCDG	5 cut(s)	64, 120, 186, 228, 297
Lsp1109I	GCAGC	3 cut(s)	188, 208, 313
LweI	GCATC	2 cut(s)	124, 305
MaeI	CTAG	2 cut(s)	240, 321
MaeIII	GTNAC	1 cut(s)	168
MalI	GATC	2 cut(s)	188, 344
MboI	GATC	2 cut(s)	186, 342
MboII	GAAGA	5 cut(s)	30, 83, 161, 255, 352
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	2 cut(s)	33, 74
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	4 cut(s)	18, 37, 246, 300
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	276, 355
NdeII	GATC	2 cut(s)	186, 342
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	168
NspV	TTCGAA	1 cut(s)	60
PaeR7I	CTCGAG	1 cut(s)	22
PaqCI	CACCTGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	178, 198, 328
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	282
PspXI	VCTCGAGB	1 cut(s)	22
PsrI	GAACNNNNNNTAC	2 cut(s)	93, 125
PstI	CTGCAG	1 cut(s)	178
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	276, 355
SatI	GCNGC	3 cut(s)	177, 197, 327
Sau3AI	GATC	2 cut(s)	186, 342
ScaI	AGTACT	1 cut(s)	319
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	7 cut(s)	142, 175, 181, 220, 241, 257, 282
SfaNI	GCATC	2 cut(s)	124, 305
SfcI	CTRYAG	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	22
SfuI	TTCGAA	1 cut(s)	60
SlaI	CTCGAG	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
SpeI	ACTAGT	1 cut(s)	320
Sse9I	AATT	2 cut(s)	33, 74
SspMI	CTAG	2 cut(s)	240, 321
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	3 cut(s)	18, 23, 60
TasI	AATT	2 cut(s)	33, 74
TatI	WGTACW	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	2 cut(s)	276, 355
Tru9I	TTAA	2 cut(s)	276, 355
TseFI	GTSAC	1 cut(s)	168
TseI	GCWGC	3 cut(s)	176, 196, 326
Tsp45I	GTSAC	1 cut(s)	168
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	2 cut(s)	33, 74
XhoI	CTCGAG	1 cut(s)	22
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	240, 321
ZrmI	AGTACT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.