Rh2BG671600

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0006270
Physical Location & Seq
Reverse (-)
88333275 .. 88334861
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG671600.1

Sequence Viewer

Length: 612 bp
ATGGCAACCCAAGCAGCTGCAACTTTTAACGGCAATTTGAAGAAAGCTGTTGCCGGCCTGAGACGGATTAATCTTGATGGGCTGCGGTGGAAAGTGTTTGATGCCAAAGGCCAGGTTCTTGGAAGGCTAGCTTCTCAAATATCTACTGTTATTCAAGGCAAGGATAAACCGACGTATACTCCAAATCGAGATGATGGAGATATGTGCATTGTGCTGAATGCGAAGGATATTTGTGTCACAGGGAGAAAACTAACCAATAAAGTTTATCATTGGCATACCGGGTATGTTGGGCACCTCAAGGAAAGGACTTTGAAGGATCAGATGGTGAAAGACCCTACAGAAGTCATTCGCAAAGCTGTATTGCGCATGCTTCCTAAGAACAAATTGCGTGACGATAGAGATAGAAAGCTGAGAATTTTTGCTGGCGGTGAACACCCATTTGGTGATAGGCCCCTTGAACCATATCTGATGCCCCCGCGAAAAGTAAGGGAAATGCGACCCCGTACAAGACGAGCCTTGGTCAGAGCTCAGATAAAGGCTGAACAGCAACAACAGGATATTAATGATCCACGGAAGGGCAGGAAGAAGGATAGAGTCGAAGTGAGCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L13

Protein Analysis

203

Amino Acids

23.32

Weight (kDa)

10.45

Isoelectric Point (pI)

27.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L13 PF00572 29 - 146 1.8e-44 Ribosomal protein L13
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 291
AccI GTMKAC 1 cut(s) 176
AccII CGCG 1 cut(s) 478
AciI CCGC 3 cut(s) 85, 426, 476
AclWI GGATC 2 cut(s) 324, 560
AcsI RAATTY 1 cut(s) 414
AfaI GTAC 1 cut(s) 505
AfiI CCNNNNNNNGG 1 cut(s) 575
AgsI TTSAA 4 cut(s) 40, 155, 313, 458
AjnI CCWGG 1 cut(s) 111
AjuI GAANNNNNNNTTGG 2 cut(s) 423, 455
AluBI AGCT 6 cut(s) 17, 47, 131, 356, 409, 527
AluI AGCT 6 cut(s) 17, 47, 131, 356, 409, 527
Alw21I GWGCWC 1 cut(s) 529
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 2 cut(s) 324, 560
AoxI GGCC 3 cut(s) 55, 109, 449
ApeKI GCWGC 3 cut(s) 14, 17, 82
ApoI RAATTY 1 cut(s) 414
AseI ATTAAT 2 cut(s) 69, 561
Asp700I GAANNNNTTC 1 cut(s) 345
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 450
AsuC2I CCSGG 1 cut(s) 280
AsuHPI GGTGA 3 cut(s) 337, 440, 455
AsuNHI GCTAGC 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 294
BanI GGYRCC 1 cut(s) 291
BanII GRGCYC 1 cut(s) 529
Bbv12I GWGCWC 1 cut(s) 529
BbvI GCAGC 3 cut(s) 4, 26, 69
BccI CCATC 3 cut(s) 71, 188, 316
BceAI ACGGC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 113
BcnI CCSGG 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 336
BisI GCNGC 3 cut(s) 15, 18, 83
BlsI GCNGC 3 cut(s) 16, 19, 84
Bme1390I CCNGG 2 cut(s) 113, 280
BmgT120I GGNCC 1 cut(s) 450
BmiI GGNNCC 2 cut(s) 293, 452
BmrFI CCNGG 2 cut(s) 113, 280
BmsI GCATC 2 cut(s) 91, 459
BmtI GCTAGC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 280
BsaJI CCNNGG 2 cut(s) 516, 569
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 575
Bse118I RCCGGY 1 cut(s) 53
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 2 cut(s) 516, 569
BseLI CCNNNNNNNGG 1 cut(s) 575
BseMII CTCAG 3 cut(s) 50, 401, 542
BseSI GKGCMC 1 cut(s) 294
BseXI GCAGC 3 cut(s) 4, 26, 69
Bsh1236I CGCG 1 cut(s) 478
BshFI GGCC 3 cut(s) 57, 111, 451
BshNI GGYRCC 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 529
BsiSI CCGG 2 cut(s) 54, 279
BslI CCNNNNNNNGG 1 cut(s) 575
BsmAI GTCTC 1 cut(s) 55
BsmBI CGTCTC 1 cut(s) 55
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 3 cut(s) 57, 111, 451
Bsp1286I GDGCHC 2 cut(s) 294, 529
Bsp143I GATC 2 cut(s) 316, 565
BspACI CCGC 3 cut(s) 85, 426, 476
BspANI GGCC 3 cut(s) 57, 111, 451
BspCNI CTCAG 3 cut(s) 51, 402, 541
BspFNI CGCG 1 cut(s) 478
BspLI GGNNCC 2 cut(s) 293, 452
BspOI GCTAGC 1 cut(s) 131
BspPI GGATC 2 cut(s) 324, 560
BspT107I GGYRCC 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 516, 569
BssMI GATC 2 cut(s) 316, 565
BssNAI GTATAC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 516
Bst1107I GTATAC 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 148
BstC8I GCNNGC 4 cut(s) 55, 129, 368, 424
BstDEI CTNAG 4 cut(s) 59, 375, 410, 528
BstDSI CCRYGG 1 cut(s) 569
BstFNI CGCG 1 cut(s) 478
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 2 cut(s) 319, 568
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 2 cut(s) 316, 565
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 2 cut(s) 111, 278
BstSFI CTRYAG 1 cut(s) 336
BstSLI GKGCMC 1 cut(s) 294
BstUI CGCG 1 cut(s) 478
BstV1I GCAGC 3 cut(s) 4, 26, 69
BstXI CCANNNNNNTGG 1 cut(s) 119
BstZ17I GTATAC 1 cut(s) 177
BsuRI GGCC 3 cut(s) 57, 111, 451
BtgI CCRYGG 1 cut(s) 569
Cac8I GCNNGC 4 cut(s) 55, 129, 368, 424
CfoI GCGC 1 cut(s) 366
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 450
Csp6I GTAC 1 cut(s) 504
CviAII CATG 1 cut(s) 367
CviQI GTAC 1 cut(s) 504
DdeI CTNAG 4 cut(s) 59, 375, 410, 528
DpnI GATC 2 cut(s) 318, 567
DpnII GATC 2 cut(s) 316, 565
Ecl136II GAGCTC 1 cut(s) 527
Eco130I CCWWGG 1 cut(s) 516
Eco24I GRGCYC 1 cut(s) 529
Eco53kI GAGCTC 1 cut(s) 527
EcoICRI GAGCTC 1 cut(s) 527
EcoO109I RGGNCCY 1 cut(s) 450
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 516
EcoT38I GRGCYC 1 cut(s) 529
ErhI CCWWGG 1 cut(s) 516
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 1 cut(s) 370
FaiI YATR 7 cut(s) 177, 203, 276, 285, 368, 463, 610
FalI AAGNNNNNCTT 2 cut(s) 115, 147
FatI CATG 1 cut(s) 366
FauI CCCGC 1 cut(s) 483
FblI GTMKAC 1 cut(s) 176
Fnu4HI GCNGC 3 cut(s) 15, 18, 83
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 3 cut(s) 15, 18, 83
FspBI CTAG 1 cut(s) 128
FspI TGCGCA 1 cut(s) 365
GlaI GCGC 1 cut(s) 365
GluI GCNGC 3 cut(s) 15, 18, 83
HaeIII GGCC 3 cut(s) 57, 111, 451
HapII CCGG 2 cut(s) 54, 279
HhaI GCGC 1 cut(s) 366
Hin1II CATG 1 cut(s) 370
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HinfI GANTC 1 cut(s) 594
HpaII CCGG 2 cut(s) 54, 279
HphI GGTGA 3 cut(s) 337, 440, 455
Hpy166II GTNNAC 2 cut(s) 177, 431
Hpy188I TCNGA 4 cut(s) 321, 468, 524, 531
Hpy188III TCNNGA 2 cut(s) 74, 188
Hpy8I GTNNAC 2 cut(s) 177, 431
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 5 cut(s) 117, 217, 307, 568, 580
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 2 cut(s) 20, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 4 cut(s) 59, 375, 410, 528
HpySE526I ACGT 1 cut(s) 173
Hsp92II CATG 1 cut(s) 370
HspAI GCGC 1 cut(s) 364
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Kzo9I GATC 2 cut(s) 316, 565
LpnPI CCDG 9 cut(s) 67, 71, 98, 125, 225, 292, 408, 539, 565
Lsp1109I GCAGC 3 cut(s) 4, 26, 69
LweI GCATC 2 cut(s) 91, 459
MaeI CTAG 1 cut(s) 128
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 2 cut(s) 235, 389
MalI GATC 2 cut(s) 318, 567
MboI GATC 2 cut(s) 316, 565
MboII GAAGA 2 cut(s) 52, 595
MhlI GDGCHC 2 cut(s) 294, 529
MluCI AATT 3 cut(s) 34, 383, 414
MlyI GAGTC 1 cut(s) 603
MnlI CCTC 1 cut(s) 305
MroNI GCCGGC 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 345
MseI TTAA 3 cut(s) 27, 69, 561
MspA1I CMGCKG 1 cut(s) 17
MspI CCGG 2 cut(s) 54, 279
MspR9I CCNGG 2 cut(s) 113, 280
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 478
MwoI GCNNNNNNNGC 1 cut(s) 11
NaeI GCCGGC 1 cut(s) 55
NciI CCSGG 1 cut(s) 280
NdeII GATC 2 cut(s) 316, 565
NgoMIV GCCGGC 1 cut(s) 53
NheI GCTAGC 1 cut(s) 127
NlaIII CATG 1 cut(s) 370
NlaIV GGNNCC 2 cut(s) 293, 452
NmuCI GTSAC 2 cut(s) 235, 389
NsbI TGCGCA 1 cut(s) 365
NspI RCATGY 1 cut(s) 370
PaeI GCATGC 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 603
PctI GAATGC 1 cut(s) 223
PdiI GCCGGC 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 345
PkrI GCNGC 3 cut(s) 16, 19, 84
PleI GAGTC 1 cut(s) 602
PpsI GAGTC 1 cut(s) 602
PshBI ATTAAT 2 cut(s) 69, 561
Psp124BI GAGCTC 1 cut(s) 529
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 293, 452
PspPI GGNCC 1 cut(s) 450
PvuII CAGCTG 1 cut(s) 17
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
SacI GAGCTC 1 cut(s) 529
SaqAI TTAA 3 cut(s) 27, 69, 561
SatI GCNGC 3 cut(s) 15, 18, 83
Sau3AI GATC 2 cut(s) 316, 565
Sau96I GGNCC 1 cut(s) 450
SchI GAGTC 1 cut(s) 603
ScrFI CCNGG 2 cut(s) 113, 280
SduI GDGCHC 2 cut(s) 294, 529
SetI ASST 9 cut(s) 19, 49, 117, 133, 176, 297, 358, 411, 529
SfaNI GCATC 2 cut(s) 91, 459
SfcI CTRYAG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SphI GCATGC 1 cut(s) 370
Sse9I AATT 3 cut(s) 34, 383, 414
SsiI CCGC 3 cut(s) 85, 426, 476
SspMI CTAG 1 cut(s) 128
SstI GAGCTC 1 cut(s) 529
StyD4I CCNGG 2 cut(s) 111, 278
StyI CCWWGG 1 cut(s) 516
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 1 cut(s) 176
TaqI TCGA 2 cut(s) 187, 597
TasI AATT 3 cut(s) 34, 383, 414
Tru1I TTAA 3 cut(s) 27, 69, 561
Tru9I TTAA 3 cut(s) 27, 69, 561
TseFI GTSAC 2 cut(s) 235, 389
TseI GCWGC 3 cut(s) 14, 17, 82
Tsp45I GTSAC 2 cut(s) 235, 389
TspGWI ACGGA 2 cut(s) 79, 586
VspI ATTAAT 2 cut(s) 69, 561
XapI RAATTY 1 cut(s) 414
XceI RCATGY 1 cut(s) 370
XmiI GTMKAC 1 cut(s) 176
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.