Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023882.1

Orthogroup ID

OG0006270

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2315

Gene Structure 2315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023882.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgctggcgggtgtgcggattgagaatttgtgttttgcttggttgatacagaaagctgtggccggcctgagacggattaatcttgatgggctgcggtggaaagtgtttgatgccaaaggccaggttcttggaaggctagcttctcaaatatctactgttattcaaggcaaggataaaccgacgtatgctccaaatcgagatgatggagatatgtgcattgtgctgaatgcgaaggatatttgtgtcacagggagaaaactaaccgataaagtttatcattggcataccgggtatgttgggcacctcaaggaaaggactttgaaggatcagatggtgaaagaccctacagaagtcattcgcaaagctgtattgcgcatgcttcctaagaacaaattgcgtgacgatagagatagaaagctgagaatttttgctggcggtgaacacccatttggtgataggccccttgaaccatatctgatgcccccgcgaaaagtaagggaaatgcgaccccgtacaagacgagccttggtcagagctcagataaaggctgaacagcaacaacaggatattaatgatccacggaagggcaggaagaaggatagagtcgaagcgagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

205

Amino Acids

23.7

Weight (kDa)

10.28

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01790 AT3G01790 AT3G01790
fragaria_vesca	FvH4_6g53020
malus_domestica	MD17G1015300.v1.1
prunus_persica	Prupe.3G148400_v2.0.a1 Prupe.3G148400_v2.0.a1 Prupe.3G148400_v2.0.a1
pyrus_communis	pycom17g01250
rosa_chinensis	RchiOBHm_Chr2g0174761 RchiOBHm_Chr4g0409361
rosa_laevigata	RLG00000008566 RLG00000022293
rosa_multiflora	Rmu_sc0023882.1_g000001 Rmu_sc0041666.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077760 Rroxscaffold_5G00353880
rosa_rugosa	Rorug02G0579300 Rorug04G0093200
rosa_samantha	Rh2BG671600 Rh2CG634700 Rh2DG685000 Rh4AG155800 Rh4CG165000 Rh4DG148800
rosa_wichuraiana	Rw2G054130 Rw4G012750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	374
AccB1I	GGYRCC	1 cut(s)	300
AccII	CGCG	1 cut(s)	487
AciI	CCGC	5 cut(s)	8, 16, 94, 435, 485
AclWI	GGATC	2 cut(s)	333, 569
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	2 cut(s)	25, 423
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	1 cut(s)	584
AgsI	TTSAA	3 cut(s)	164, 322, 467
AjnI	CCWGG	1 cut(s)	120
AjuI	GAANNNNNNNTTGG	2 cut(s)	432, 464
AluBI	AGCT	5 cut(s)	56, 140, 365, 418, 536
AluI	AGCT	5 cut(s)	56, 140, 365, 418, 536
Alw21I	GWGCWC	1 cut(s)	538
Alw26I	GTCTC	1 cut(s)	64
AlwI	GGATC	2 cut(s)	333, 569
AoxI	GGCC	4 cut(s)	60, 64, 118, 458
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	2 cut(s)	25, 423
AseI	ATTAAT	2 cut(s)	78, 570
Asp700I	GAANNNNTTC	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	375
AspS9I	GGNCC	1 cut(s)	459
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	3 cut(s)	346, 449, 464
AsuNHI	GCTAGC	1 cut(s)	136
BaeGI	GKGCMC	1 cut(s)	303
BanI	GGYRCC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	538
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	3 cut(s)	80, 197, 325
BciT130I	CCWGG	1 cut(s)	122
BcnI	CCSGG	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	345
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	2 cut(s)	122, 289
BmgT120I	GGNCC	1 cut(s)	459
BmiI	GGNNCC	2 cut(s)	302, 461
BmrFI	CCNGG	2 cut(s)	122, 289
BmsI	GCATC	2 cut(s)	100, 468
BmtI	GCTAGC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	289
BsaJI	CCNNGG	2 cut(s)	525, 578
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	1 cut(s)	584
Bse118I	RCCGGY	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	525, 578
BseLI	CCNNNNNNNGG	1 cut(s)	584
BseMII	CTCAG	3 cut(s)	59, 410, 551
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	487
BshFI	GGCC	4 cut(s)	62, 66, 120, 460
BshNI	GGYRCC	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	538
BsiSI	CCGG	2 cut(s)	63, 288
BslI	CCNNNNNNNGG	1 cut(s)	584
BsmAI	GTCTC	1 cut(s)	64
BsmBI	CGTCTC	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	4 cut(s)	62, 66, 120, 460
Bsp1286I	GDGCHC	2 cut(s)	303, 538
Bsp143I	GATC	2 cut(s)	325, 574
BspACI	CCGC	5 cut(s)	8, 16, 94, 435, 485
BspANI	GGCC	4 cut(s)	62, 66, 120, 460
BspCNI	CTCAG	3 cut(s)	60, 411, 550
BspFNI	CGCG	1 cut(s)	487
BspLI	GGNNCC	2 cut(s)	302, 461
BspOI	GCTAGC	1 cut(s)	140
BspPI	GGATC	2 cut(s)	333, 569
BspT107I	GGYRCC	1 cut(s)	300
BsrFI	RCCGGY	1 cut(s)	62
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	525, 578
BssMI	GATC	2 cut(s)	325, 574
BssT1I	CCWWGG	1 cut(s)	525
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	1 cut(s)	157
BstC8I	GCNNGC	6 cut(s)	6, 64, 138, 377, 433, 613
BstDEI	CTNAG	4 cut(s)	68, 384, 419, 537
BstDSI	CCRYGG	1 cut(s)	578
BstFNI	CGCG	1 cut(s)	487
BstHHI	GCGC	1 cut(s)	375
BstKTI	GATC	2 cut(s)	328, 577
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	2 cut(s)	325, 574
BstNI	CCWGG	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	2 cut(s)	120, 287
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	303
BstUI	CGCG	1 cut(s)	487
BstV1I	GCAGC	1 cut(s)	78
BstXI	CCANNNNNNTGG	1 cut(s)	128
BsuRI	GGCC	4 cut(s)	62, 66, 120, 460
BtgI	CCRYGG	1 cut(s)	578
Cac8I	GCNNGC	6 cut(s)	6, 64, 138, 377, 433, 613
CfoI	GCGC	1 cut(s)	375
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	459
Csp6I	GTAC	1 cut(s)	513
CviAII	CATG	1 cut(s)	376
CviQI	GTAC	1 cut(s)	513
DdeI	CTNAG	4 cut(s)	68, 384, 419, 537
DpnI	GATC	2 cut(s)	327, 576
DpnII	GATC	2 cut(s)	325, 574
EaeI	YGGCCR	1 cut(s)	60
Ecl136II	GAGCTC	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	525
Eco24I	GRGCYC	1 cut(s)	538
Eco53kI	GAGCTC	1 cut(s)	536
EcoICRI	GAGCTC	1 cut(s)	536
EcoO109I	RGGNCCY	1 cut(s)	459
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	525
EcoT38I	GRGCYC	1 cut(s)	538
ErhI	CCWWGG	1 cut(s)	525
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	1 cut(s)	379
FaiI	YATR	6 cut(s)	186, 212, 285, 294, 377, 472
FalI	AAGNNNNNCTT	2 cut(s)	124, 156
FatI	CATG	1 cut(s)	375
FauI	CCCGC	1 cut(s)	492
Fnu4HI	GCNGC	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	538
FseI	GGCCGGCC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	1 cut(s)	137
FspI	TGCGCA	1 cut(s)	374
GlaI	GCGC	1 cut(s)	374
GluI	GCNGC	1 cut(s)	92
HaeIII	GGCC	4 cut(s)	62, 66, 120, 460
HapII	CCGG	2 cut(s)	63, 288
HhaI	GCGC	1 cut(s)	375
Hin1II	CATG	1 cut(s)	379
Hin6I	GCGC	1 cut(s)	373
HinP1I	GCGC	1 cut(s)	373
HinfI	GANTC	1 cut(s)	603
HpaII	CCGG	2 cut(s)	63, 288
HphI	GGTGA	3 cut(s)	346, 449, 464
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188I	TCNGA	4 cut(s)	330, 477, 533, 540
Hpy188III	TCNNGA	2 cut(s)	83, 197
Hpy8I	GTNNAC	1 cut(s)	440
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	5 cut(s)	126, 226, 316, 577, 589
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	1 cut(s)	216
HpyF3I	CTNAG	4 cut(s)	68, 384, 419, 537
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	1 cut(s)	379
HspAI	GCGC	1 cut(s)	373
KroI	GCCGGC	1 cut(s)	62
KroNI	GCCGGC	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	325, 574
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	9 cut(s)	76, 80, 107, 134, 234, 301, 417, 548, 574
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	2 cut(s)	100, 468
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	182
MaeIII	GTNAC	2 cut(s)	244, 398
MalI	GATC	2 cut(s)	327, 576
MboI	GATC	2 cut(s)	325, 574
MboII	GAAGA	1 cut(s)	604
MhlI	GDGCHC	2 cut(s)	303, 538
MluCI	AATT	3 cut(s)	25, 392, 423
MlyI	GAGTC	1 cut(s)	612
MnlI	CCTC	1 cut(s)	314
MroNI	GCCGGC	1 cut(s)	62
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	2 cut(s)	78, 570
MspI	CCGG	2 cut(s)	63, 288
MspR9I	CCNGG	2 cut(s)	122, 289
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	487
NaeI	GCCGGC	1 cut(s)	64
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	2 cut(s)	325, 574
NgoMIV	GCCGGC	1 cut(s)	62
NheI	GCTAGC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	2 cut(s)	302, 461
NmuCI	GTSAC	2 cut(s)	244, 398
NsbI	TGCGCA	1 cut(s)	374
NspI	RCATGY	1 cut(s)	379
PaeI	GCATGC	1 cut(s)	379
PctI	GAATGC	1 cut(s)	232
PdiI	GCCGGC	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	354
PkrI	GCNGC	1 cut(s)	93
PleI	GAGTC	1 cut(s)	611
PpsI	GAGTC	1 cut(s)	611
PshBI	ATTAAT	2 cut(s)	78, 570
Psp124BI	GAGCTC	1 cut(s)	538
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	302, 461
PspPI	GGNCC	1 cut(s)	459
RigI	GGCCGGCC	1 cut(s)	66
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
SacI	GAGCTC	1 cut(s)	538
SaqAI	TTAA	2 cut(s)	78, 570
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	2 cut(s)	325, 574
Sau96I	GGNCC	1 cut(s)	459
SchI	GAGTC	1 cut(s)	612
ScrFI	CCNGG	2 cut(s)	122, 289
SduI	GDGCHC	2 cut(s)	303, 538
SetI	ASST	8 cut(s)	58, 126, 142, 185, 306, 367, 420, 538
SfaNI	GCATC	2 cut(s)	100, 468
SfcI	CTRYAG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SphI	GCATGC	1 cut(s)	379
Sse9I	AATT	3 cut(s)	25, 392, 423
SsiI	CCGC	5 cut(s)	8, 16, 94, 435, 485
SspMI	CTAG	1 cut(s)	137
SstI	GAGCTC	1 cut(s)	538
StyD4I	CCNGG	2 cut(s)	120, 287
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	2 cut(s)	196, 606
TasI	AATT	3 cut(s)	25, 392, 423
Tru1I	TTAA	2 cut(s)	78, 570
Tru9I	TTAA	2 cut(s)	78, 570
TseFI	GTSAC	2 cut(s)	244, 398
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	2 cut(s)	244, 398
TspGWI	ACGGA	2 cut(s)	88, 595
VspI	ATTAAT	2 cut(s)	78, 570
XapI	RAATTY	2 cut(s)	25, 423
XceI	RCATGY	1 cut(s)	379
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.