Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006270

Physical Location & Seq

Genomic Coordinates Forward (+)

857846 .. 859318

Gene Structure 1473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g01250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCGGGCCAAGCAGCTACCGCGTTTAGTGGCAACATGAAGAGAGCTCTTGCTGGCCTGAGACGTATTGATCTTGACGGTCTGCGGTGGAAAGTTTTCGATGCGAAAGGCCAGGTTCTTGGAAGACTAGCAGCTCAAATATCTACAGTGATTCAAGGAAAGGATAAACCAACATATGCTCCAAACCGAGATGATGGCGATATGTGCATCGTGCTTAACGCAAAGGATGTTTGTGTCACGGGGAGAAAAATGACCGATAAAGTTTATTATTGGCATACTGGGTATGTGGGTCACCTCAAGCAAAGGAATTTGAAGGATCAGTTTGCTAAAGATCCTACAGAAGTCATTCGCAAAGCTGTTATGCGCATGCTGCCGAGGAACAAACTGCGCGATGATAGAGATAGGAAGTTGAGGATATTTGCTGGCGATGAACATCCCTTTGCTGATAGGCCCCTTGAACCATACCTGATGCCCCCTCGGAATGTAAGGGAAATGCGACCCCGTGCAAGACGAGCCATGGTCCGTGCTCAGAAAAAGGCTGAACAGCAACAACTGGATGCTGGTGATCCACGGAGGGGGAGGAAGAAAGATAGAGCGGAAGTGACCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

204

Amino Acids

23.27

Weight (kDa)

10.4

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01790 AT3G01790 AT3G01790
fragaria_vesca	FvH4_6g53020
malus_domestica	MD17G1015300.v1.1
prunus_persica	Prupe.3G148400_v2.0.a1 Prupe.3G148400_v2.0.a1 Prupe.3G148400_v2.0.a1
pyrus_communis	pycom17g01250
rosa_chinensis	RchiOBHm_Chr2g0174761 RchiOBHm_Chr4g0409361
rosa_laevigata	RLG00000008566 RLG00000022293
rosa_multiflora	Rmu_sc0023882.1_g000001 Rmu_sc0041666.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077760 Rroxscaffold_5G00353880
rosa_rugosa	Rorug02G0579300 Rorug04G0093200
rosa_samantha	Rh2BG671600 Rh2CG634700 Rh2DG685000 Rh4AG155800 Rh4CG165000 Rh4DG148800
rosa_wichuraiana	Rw2G054130 Rw4G012750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	365
AccBSI	CCGCTC	1 cut(s)	596
AccII	CGCG	2 cut(s)	23, 390
AciI	CCGC	5 cut(s)	5, 21, 85, 596, 606
AclWI	GGATC	3 cut(s)	324, 326, 560
AcsI	RAATTY	1 cut(s)	307
AfiI	CCNNNNNNNGG	1 cut(s)	575
AgsI	TTSAA	3 cut(s)	155, 313, 458
AjnI	CCWGG	1 cut(s)	111
AluBI	AGCT	4 cut(s)	17, 47, 134, 356
AluI	AGCT	4 cut(s)	17, 47, 134, 356
Alw21I	GWGCWC	2 cut(s)	49, 529
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	3 cut(s)	324, 326, 560
AoxI	GGCC	4 cut(s)	7, 55, 109, 449
ApeKI	GCWGC	3 cut(s)	14, 131, 370
ApoI	RAATTY	1 cut(s)	307
Asp700I	GAANNNNTTC	2 cut(s)	95, 345
AspLEI	GCGC	2 cut(s)	366, 390
AspS9I	GGNCC	3 cut(s)	7, 450, 520
AsuHPI	GGTGA	2 cut(s)	284, 575
AvaII	GGWCC	1 cut(s)	520
BanII	GRGCYC	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	130
Bbv12I	GWGCWC	2 cut(s)	49, 529
BbvI	GCAGC	3 cut(s)	26, 143, 357
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	2 cut(s)	144, 336
BisI	GCNGC	3 cut(s)	15, 132, 371
BlsI	GCNGC	3 cut(s)	16, 133, 372
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	520
BmgT120I	GGNCC	3 cut(s)	7, 450, 520
BmiI	GGNNCC	1 cut(s)	452
BmrFI	CCNGG	1 cut(s)	113
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	4 cut(s)	91, 216, 459, 547
BmuI	ACTGGG	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	281
BsaBI	GATNNNNATC	1 cut(s)	432
BsaJI	CCNNGG	4 cut(s)	374, 476, 516, 569
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bsc4I	CCNNNNNNNGG	1 cut(s)	575
Bse1I	ACTGG	2 cut(s)	283, 558
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	4 cut(s)	374, 476, 516, 569
BseGI	GGATG	3 cut(s)	232, 433, 562
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	575
BseMII	CTCAG	2 cut(s)	50, 542
BseNI	ACTGG	2 cut(s)	283, 558
BseXI	GCAGC	3 cut(s)	26, 143, 357
Bsh1236I	CGCG	2 cut(s)	23, 390
BshFI	GGCC	4 cut(s)	9, 57, 111, 451
BsiHKAI	GWGCWC	2 cut(s)	49, 529
BslI	CCNNNNNNNGG	1 cut(s)	575
BsmAI	GTCTC	1 cut(s)	55
BsmBI	CGTCTC	1 cut(s)	55
BsnI	GGCC	4 cut(s)	9, 57, 111, 451
Bsp1286I	GDGCHC	2 cut(s)	49, 529
Bsp143I	GATC	4 cut(s)	70, 316, 331, 565
Bsp19I	CCATGG	1 cut(s)	516
BspACI	CCGC	5 cut(s)	5, 21, 85, 596, 606
BspANI	GGCC	4 cut(s)	9, 57, 111, 451
BspCNI	CTCAG	2 cut(s)	51, 541
BspFNI	CGCG	2 cut(s)	23, 390
BspLI	GGNNCC	1 cut(s)	452
BspPI	GGATC	3 cut(s)	324, 326, 560
BsrBI	CCGCTC	1 cut(s)	596
BsrI	ACTGG	2 cut(s)	283, 558
BssECI	CCNNGG	4 cut(s)	374, 476, 516, 569
BssMI	GATC	4 cut(s)	70, 316, 331, 565
BssT1I	CCWWGG	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	2 cut(s)	80, 148
Bst6I	CTCTTC	1 cut(s)	35
BstC8I	GCNNGC	4 cut(s)	7, 55, 368, 424
BstDEI	CTNAG	2 cut(s)	59, 528
BstDSI	CCRYGG	2 cut(s)	516, 569
BstEII	GGTNACC	1 cut(s)	290
BstF5I	GGATG	3 cut(s)	232, 433, 562
BstFNI	CGCG	2 cut(s)	23, 390
BstHHI	GCGC	2 cut(s)	366, 390
BstKTI	GATC	4 cut(s)	73, 319, 334, 568
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	4 cut(s)	70, 316, 331, 565
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 204, 370, 512
BstNI	CCWGG	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	370
BstPI	GGTNACC	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	111
BstSFI	CTRYAG	2 cut(s)	144, 336
BstUI	CGCG	2 cut(s)	23, 390
BstV1I	GCAGC	3 cut(s)	26, 143, 357
BstV2I	GAAGAC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	4 cut(s)	9, 57, 111, 451
BtgI	CCRYGG	2 cut(s)	516, 569
BtgZI	GCGATG	2 cut(s)	405, 441
BtsCI	GGATG	3 cut(s)	232, 433, 562
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	4 cut(s)	7, 55, 368, 424
CfoI	GCGC	2 cut(s)	366, 390
Cfr13I	GGNCC	3 cut(s)	7, 450, 520
CviAII	CATG	4 cut(s)	37, 367, 517, 609
DdeI	CTNAG	2 cut(s)	59, 528
DpnI	GATC	4 cut(s)	72, 318, 333, 567
DpnII	GATC	4 cut(s)	70, 316, 331, 565
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Ecl136II	GAGCTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	516
Eco24I	GRGCYC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	520
Eco53kI	GAGCTC	1 cut(s)	47
Eco91I	GGTNACC	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	450
EcoO65I	GGTNACC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	516
EcoT38I	GRGCYC	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	4 cut(s)	40, 370, 520, 612
FatI	CATG	4 cut(s)	36, 366, 516, 608
FauNDI	CATATG	1 cut(s)	175
Fnu4HI	GCNGC	3 cut(s)	15, 132, 371
FokI	GGATG	3 cut(s)	239, 420, 569
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	3 cut(s)	15, 132, 371
FspAI	RTGCGCAY	1 cut(s)	365
FspBI	CTAG	1 cut(s)	128
FspI	TGCGCA	1 cut(s)	365
GlaI	GCGC	2 cut(s)	365, 389
GluI	GCNGC	3 cut(s)	15, 132, 371
HaeIII	GGCC	4 cut(s)	9, 57, 111, 451
HhaI	GCGC	2 cut(s)	366, 390
Hin1II	CATG	4 cut(s)	40, 370, 520, 612
Hin6I	GCGC	2 cut(s)	364, 388
HinP1I	GCGC	2 cut(s)	364, 388
HinfI	GANTC	1 cut(s)	151
HphI	GGTGA	2 cut(s)	284, 575
Hpy188I	TCNGA	2 cut(s)	480, 531
Hpy188III	TCNNGA	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	2 cut(s)	80, 148
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	207, 506
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 204, 370, 512
HpyF3I	CTNAG	2 cut(s)	59, 528
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	4 cut(s)	40, 370, 520, 612
HspAI	GCGC	2 cut(s)	364, 388
Kzo9I	GATC	4 cut(s)	70, 316, 331, 565
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	9 cut(s)	39, 71, 98, 125, 264, 408, 479, 539, 546
Lsp1109I	GCAGC	3 cut(s)	26, 143, 357
LweI	GCATC	4 cut(s)	91, 216, 459, 547
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	3 cut(s)	235, 290, 601
MalI	GATC	4 cut(s)	72, 318, 333, 567
MbiI	CCGCTC	1 cut(s)	596
MboI	GATC	4 cut(s)	70, 316, 331, 565
MboII	GAAGA	3 cut(s)	52, 135, 595
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	2 cut(s)	49, 529
MluCI	AATT	1 cut(s)	307
MnlI	CCTC	6 cut(s)	305, 369, 405, 486, 567, 573
MroXI	GAANNNNTTC	2 cut(s)	95, 345
MseI	TTAA	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	2 cut(s)	23, 390
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 204, 370, 512
NcoI	CCATGG	1 cut(s)	516
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	4 cut(s)	70, 316, 331, 565
NlaIII	CATG	4 cut(s)	40, 370, 520, 612
NlaIV	GGNNCC	1 cut(s)	452
NmeAIII	GCCGAG	1 cut(s)	399
NmuCI	GTSAC	3 cut(s)	235, 290, 601
NsbI	TGCGCA	1 cut(s)	365
NspI	RCATGY	1 cut(s)	370
PaeI	GCATGC	1 cut(s)	370
PdmI	GAANNNNTTC	2 cut(s)	95, 345
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	3 cut(s)	16, 133, 372
Psp124BI	GAGCTC	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	111
PspEI	GGTNACC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	452
PspPI	GGNCC	3 cut(s)	7, 450, 520
PsuI	RGATCY	1 cut(s)	331
SacI	GAGCTC	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	3 cut(s)	15, 132, 371
Sau3AI	GATC	4 cut(s)	70, 316, 331, 565
Sau96I	GGNCC	3 cut(s)	7, 450, 520
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	2 cut(s)	49, 529
SetI	ASST	8 cut(s)	19, 49, 67, 117, 136, 297, 358, 468
SfaNI	GCATC	4 cut(s)	91, 216, 459, 547
SfcI	CTRYAG	2 cut(s)	144, 336
SinI	GGWCC	1 cut(s)	520
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
SphI	GCATGC	1 cut(s)	370
Sse9I	AATT	1 cut(s)	307
SsiI	CCGC	5 cut(s)	5, 21, 85, 596, 606
SspMI	CTAG	1 cut(s)	128
SstI	GAGCTC	1 cut(s)	49
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	2 cut(s)	80, 148
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	1 cut(s)	99
TaqII	GACCGA	1 cut(s)	269
TasI	AATT	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	3 cut(s)	235, 290, 601
TseI	GCWGC	3 cut(s)	14, 131, 370
Tsp45I	GTSAC	3 cut(s)	235, 290, 601
TspDTI	ATGAA	2 cut(s)	53, 444
TspGWI	ACGGA	2 cut(s)	512, 586
TspRI	CASTG	1 cut(s)	153
VpaK11BI	GGWCC	1 cut(s)	520
XapI	RAATTY	1 cut(s)	307
XceI	RCATGY	1 cut(s)	370
XmnI	GAANNNNTTC	2 cut(s)	95, 345
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.