Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006270

Physical Location & Seq

Genomic Coordinates Reverse (-)

16216750 .. 16221424

Gene Structure 4675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G148400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCAAGCCAAGCAGCTACCTCTTTTAATGGCAACTTGAAGAAAGCTCTGGCCGGCCTGAGGCGTATTGATCTTGATGGGTTGCGGTGGAAAGTATTCGATGCGAAAGGCCAGGTTCTTGGAAGACTAGCATCTCAAATATCAACTGTGATTCAAGGGAAGGATAAACCAACATATGCTCCAAACCGAGATGATGGTGATATGTGCATCGTGCTTAATGCAAAGGATGTTTGTGTCACGGGGAGAAAACTAACCGATAAGGTTTATCATTGGCATACTGGGTATATAGGTCACCTCAAGGAAAGGACTTTAAAGGATCAGATGGCCAAGGACCCTACGGAAGTCATTCGCAAAGCTGTATTACGCATGCTCCCAAGGAACAAACTGCGTGACGATAGAGATAGAAAGCTGAGGATATTTGTTGGTGGTGAACACCCCTTTGGTGATCGGCCCCTTGAACCGTATCTGATGCCCTCTCGGCAAGTTAGGGAAATGCGACCCCGTACAAGACGAGCCATGGTCCGAGCTCAGAAGAAGGCTGAACAGCAACAACAGGATGCTAATGATCCACGTAGGGGAAAAAGGAAGGATAGACCCGAAGTGAATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

204

Amino Acids

23.34

Weight (kDa)

10.4

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01790 AT3G01790 AT3G01790
fragaria_vesca	FvH4_6g53020
malus_domestica	MD17G1015300.v1.1
prunus_persica	Prupe.3G148400_v2.0.a1 Prupe.3G148400_v2.0.a1 Prupe.3G148400_v2.0.a1
pyrus_communis	pycom17g01250
rosa_chinensis	RchiOBHm_Chr2g0174761 RchiOBHm_Chr4g0409361
rosa_laevigata	RLG00000008566 RLG00000022293
rosa_multiflora	Rmu_sc0023882.1_g000001 Rmu_sc0041666.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077760 Rroxscaffold_5G00353880
rosa_rugosa	Rorug02G0579300 Rorug04G0093200
rosa_samantha	Rh2BG671600 Rh2CG634700 Rh2DG685000 Rh4AG155800 Rh4CG165000 Rh4DG148800
rosa_wichuraiana	Rw2G054130 Rw4G012750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	85
AclWI	GGATC	2 cut(s)	324, 560
AcoI	YGGCCR	2 cut(s)	51, 324
AfaI	GTAC	1 cut(s)	505
AfiI	CCNNNNNNNGG	2 cut(s)	60, 575
AgsI	TTSAA	3 cut(s)	40, 155, 458
AjnI	CCWGG	1 cut(s)	111
AjuI	GAANNNNNNNTTGG	2 cut(s)	423, 455
AluBI	AGCT	5 cut(s)	17, 47, 356, 409, 527
AluI	AGCT	5 cut(s)	17, 47, 356, 409, 527
Alw21I	GWGCWC	1 cut(s)	529
AlwI	GGATC	2 cut(s)	324, 560
AoxI	GGCC	5 cut(s)	51, 55, 109, 324, 449
ApeKI	GCWGC	1 cut(s)	14
Asp700I	GAANNNNTTC	2 cut(s)	95, 345
AspS9I	GGNCC	3 cut(s)	331, 450, 520
AsuHPI	GGTGA	4 cut(s)	209, 284, 440, 455
AvaII	GGWCC	2 cut(s)	331, 520
AxyI	CCTNAGG	1 cut(s)	59
BalI	TGGCCA	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	529
BbsI	GAAGAC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	529
BbvCI	CCTCAGC	1 cut(s)	410
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	3 cut(s)	71, 188, 316
BcgI	CGANNNNNNTGC	1 cut(s)	587
BciT130I	CCWGG	1 cut(s)	113
BfaI	CTAG	1 cut(s)	128
BglI	GCCNNNNNGGC	1 cut(s)	478
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	2 cut(s)	331, 520
BmgT120I	GGNCC	3 cut(s)	331, 450, 520
BmiI	GGNNCC	2 cut(s)	333, 452
BmrFI	CCNGG	1 cut(s)	113
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	5 cut(s)	91, 140, 216, 459, 547
BmuI	ACTGGG	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	410
BpuEI	CTTGAG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	572
BsaJI	CCNNGG	3 cut(s)	327, 374, 516
BsaXI	ACNNNNNCTCC	4 cut(s)	163, 193, 354, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 575
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	283
Bse21I	CCTNAGG	1 cut(s)	59
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	3 cut(s)	327, 374, 516
BseGI	GGATG	2 cut(s)	232, 562
BseLI	CCNNNNNNNGG	2 cut(s)	60, 575
BseMII	CTCAG	3 cut(s)	50, 401, 542
BseNI	ACTGG	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	26
BshFI	GGCC	5 cut(s)	53, 57, 111, 326, 451
BsiHKAI	GWGCWC	1 cut(s)	529
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	2 cut(s)	60, 575
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	5 cut(s)	53, 57, 111, 326, 451
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp143I	GATC	4 cut(s)	70, 316, 445, 565
Bsp19I	CCATGG	1 cut(s)	516
BspACI	CCGC	1 cut(s)	85
BspANI	GGCC	5 cut(s)	53, 57, 111, 326, 451
BspCNI	CTCAG	3 cut(s)	51, 402, 541
BspLI	GGNNCC	2 cut(s)	333, 452
BspPI	GGATC	2 cut(s)	324, 560
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	283
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	3 cut(s)	327, 374, 516
BssMI	GATC	4 cut(s)	70, 316, 445, 565
BssT1I	CCWWGG	3 cut(s)	327, 374, 516
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	2 cut(s)	148, 462
BstBAI	YACGTR	1 cut(s)	572
BstC8I	GCNNGC	3 cut(s)	7, 55, 368
BstDEI	CTNAG	3 cut(s)	59, 410, 528
BstDSI	CCRYGG	1 cut(s)	516
BstEII	GGTNACC	1 cut(s)	290
BstF5I	GGATG	2 cut(s)	232, 562
BstKTI	GATC	4 cut(s)	73, 319, 448, 568
BstMBI	GATC	4 cut(s)	70, 316, 445, 565
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 478
BstNI	CCWGG	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	370
BstPI	GGTNACC	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	130
BstXI	CCANNNNNNTGG	1 cut(s)	119
Bsu36I	CCTNAGG	1 cut(s)	59
BsuRI	GGCC	5 cut(s)	53, 57, 111, 326, 451
BtgI	CCRYGG	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	232, 562
Cac8I	GCNNGC	3 cut(s)	7, 55, 368
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	331, 450, 520
Csp6I	GTAC	1 cut(s)	504
CviAII	CATG	3 cut(s)	367, 517, 609
CviQI	GTAC	1 cut(s)	504
DdeI	CTNAG	3 cut(s)	59, 410, 528
DpnI	GATC	4 cut(s)	72, 318, 447, 567
DpnII	GATC	4 cut(s)	70, 316, 445, 565
DraI	TTTAAA	1 cut(s)	312
EaeI	YGGCCR	2 cut(s)	51, 324
Ecl136II	GAGCTC	1 cut(s)	527
Eco130I	CCWWGG	3 cut(s)	327, 374, 516
Eco24I	GRGCYC	1 cut(s)	529
Eco47I	GGWCC	2 cut(s)	331, 520
Eco53kI	GAGCTC	1 cut(s)	527
Eco81I	CCTNAGG	1 cut(s)	59
Eco91I	GGTNACC	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	527
EcoO109I	RGGNCCY	1 cut(s)	331
EcoO65I	GGTNACC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	111
EcoT14I	CCWWGG	3 cut(s)	327, 374, 516
EcoT22I	ATGCAT	1 cut(s)	610
EcoT38I	GRGCYC	1 cut(s)	529
ErhI	CCWWGG	3 cut(s)	327, 374, 516
FaeI	CATG	3 cut(s)	370, 520, 612
FaiI	YATR	9 cut(s)	175, 177, 203, 276, 285, 287, 368, 518, 610
FatI	CATG	3 cut(s)	366, 516, 608
FauNDI	CATATG	1 cut(s)	175
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	2 cut(s)	239, 569
FriOI	GRGCYC	1 cut(s)	529
FseI	GGCCGGCC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	1 cut(s)	15
HaeIII	GGCC	5 cut(s)	53, 57, 111, 326, 451
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	3 cut(s)	370, 520, 612
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	4 cut(s)	209, 284, 440, 455
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	4 cut(s)	321, 468, 524, 531
Hpy188III	TCNNGA	1 cut(s)	74
Hpy8I	GTNNAC	1 cut(s)	431
HpyAV	CCTTC	3 cut(s)	154, 529, 580
HpyCH4III	ACNGT	2 cut(s)	148, 462
HpyCH4IV	ACGT	1 cut(s)	571
HpyCH4V	TGCA	3 cut(s)	207, 221, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 478
HpyF3I	CTNAG	3 cut(s)	59, 410, 528
HpySE526I	ACGT	1 cut(s)	571
Hsp92II	CATG	3 cut(s)	370, 520, 612
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	70, 316, 445, 565
LmnI	GCTCC	2 cut(s)	184, 375
LpnPI	CCDG	7 cut(s)	35, 67, 71, 98, 125, 264, 539
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	5 cut(s)	91, 140, 216, 459, 547
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	1 cut(s)	571
MaeIII	GTNAC	3 cut(s)	235, 290, 389
MalI	GATC	4 cut(s)	72, 318, 447, 567
MboI	GATC	4 cut(s)	70, 316, 445, 565
MboII	GAAGA	3 cut(s)	52, 135, 544
MhlI	GDGCHC	1 cut(s)	529
MlsI	TGGCCA	1 cut(s)	326
MluNI	TGGCCA	1 cut(s)	326
MnlI	CCTC	5 cut(s)	31, 54, 305, 405, 484
Mox20I	TGGCCA	1 cut(s)	326
Mph1103I	ATGCAT	1 cut(s)	610
MroNI	GCCGGC	1 cut(s)	53
MroXI	GAANNNNTTC	2 cut(s)	95, 345
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	3 cut(s)	27, 216, 311
Msp20I	TGGCCA	1 cut(s)	326
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	1 cut(s)	113
MwoI	GCNNNNNNNGC	2 cut(s)	11, 478
NaeI	GCCGGC	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	516
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	4 cut(s)	70, 316, 445, 565
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	3 cut(s)	370, 520, 612
NlaIV	GGNNCC	2 cut(s)	333, 452
NmeAIII	GCCGAG	1 cut(s)	457
NmuCI	GTSAC	3 cut(s)	235, 290, 389
NsiI	ATGCAT	1 cut(s)	610
NspI	RCATGY	1 cut(s)	370
PaeI	GCATGC	1 cut(s)	370
PctI	GAATGC	1 cut(s)	610
PdiI	GCCGGC	1 cut(s)	55
PdmI	GAANNNNTTC	2 cut(s)	95, 345
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	16
Ppu21I	YACGTR	1 cut(s)	572
PpuMI	RGGWCCY	1 cut(s)	331
Psp124BI	GAGCTC	1 cut(s)	529
Psp5II	RGGWCCY	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	111
PspEI	GGTNACC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	2 cut(s)	333, 452
PspPI	GGNCC	3 cut(s)	331, 450, 520
PspPPI	RGGWCCY	1 cut(s)	331
RigI	GGCCGGCC	1 cut(s)	57
RsaI	GTAC	1 cut(s)	505
RsaNI	GTAC	1 cut(s)	504
SacI	GAGCTC	1 cut(s)	529
SaqAI	TTAA	3 cut(s)	27, 216, 311
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	4 cut(s)	70, 316, 445, 565
Sau96I	GGNCC	3 cut(s)	331, 450, 520
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	529
SfaNI	GCATC	5 cut(s)	91, 140, 216, 459, 547
SinI	GGWCC	2 cut(s)	331, 520
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
SphI	GCATGC	1 cut(s)	370
SsiI	CCGC	1 cut(s)	85
SspMI	CTAG	1 cut(s)	128
SstI	GAGCTC	1 cut(s)	529
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	3 cut(s)	327, 374, 516
TaaI	ACNGT	2 cut(s)	148, 462
TaiI	ACGT	1 cut(s)	574
TaqI	TCGA	1 cut(s)	99
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	3 cut(s)	27, 216, 311
Tru9I	TTAA	3 cut(s)	27, 216, 311
TseFI	GTSAC	3 cut(s)	235, 290, 389
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	3 cut(s)	235, 290, 389
TspGWI	ACGGA	1 cut(s)	353
VpaK11BI	GGWCC	2 cut(s)	331, 520
XceI	RCATGY	1 cut(s)	370
XmnI	GAANNNNTTC	2 cut(s)	95, 345
XspI	CTAG	1 cut(s)	128
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.