RLG00000008566

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0006270
Physical Location & Seq
Forward (+)
32228513 .. 32230229
1717 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008566

Sequence Viewer

Length: 663 bp
ATGGCAAGCCAGGCAGCTAGGTCTTTTAACGGTAACATGAAGAAAGCTGTTGCCGGCCTCAGACGTATTAATCTTGATGGTCTGAGATGGAGAGTATTCGATGCGAAAGGCCAGGTTCTTGGAAGGCTAGCATCTCAAATATCTACTGTAATTCAAGGAAAGGATAAACCAACATACACTCCAAATCGAGATGATGGAGATATGTGCATTGTGCTGAATGCAAAGGATATTTGCGTCACCGGGAAAAAACTGACTGATAAAGTTTATCATTGGCATACTGGGTATGTGGGTCATCTGAAGGAGAGGACGTTAAAAGATCAGATGGTCAAAGATCCTACGGAAGTCATTCGCAAAGCTGTGTTACGTATGCTTCCAAAGAACAAATTGCGCGATGATAGAGATAGAAAGCTGAGGATATTTCCTGGAAGTGAACACCCCTTTGGTGATCGGCCCCTTGAACCATATGTGATGCCCCCTAGGAGAGTAAGGGAAATGCAACCGCGTACAAGACGAGCCATTGTCCGAGCTCAGAAAAAGGCTGAACAGCAACAACAAGTTGCTAATGATCCACGACGGGGCAAAAAGAAGGATACACGGGAATTGGTTGCTTCTAATTACTCGAGCTTATTTGGGCTTATGAAAGTTGTTGGTGAAGGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L13

Protein Analysis

221

Amino Acids

25.19

Weight (kDa)

10.34

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L13 PF00572 29 - 146 2.2e-45 Ribosomal protein L13
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 390, 502
AciI CCGC 1 cut(s) 500
AclWI GGATC 2 cut(s) 326, 560
AcuI CTGAAG 1 cut(s) 317
AfaI GTAC 1 cut(s) 505
AfiI CCNNNNNNNGG 1 cut(s) 575
AgsI TTSAA 2 cut(s) 155, 458
AjnI CCWGG 3 cut(s) 9, 111, 421
AjuI GAANNNNNNNTTGG 2 cut(s) 423, 455
AluBI AGCT 6 cut(s) 17, 47, 356, 409, 527, 624
AluI AGCT 6 cut(s) 17, 47, 356, 409, 527, 624
Alw21I GWGCWC 1 cut(s) 529
AlwI GGATC 2 cut(s) 326, 560
Ama87I CYCGRG 1 cut(s) 619
AoxI GGCC 3 cut(s) 55, 109, 449
ApeKI GCWGC 1 cut(s) 14
AseI ATTAAT 1 cut(s) 69
Asp700I GAANNNNTTC 1 cut(s) 345
AspA2I CCTAGG 1 cut(s) 476
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 450
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 3 cut(s) 229, 455, 662
AsuNHI GCTAGC 1 cut(s) 127
AvaI CYCGRG 1 cut(s) 619
AvrII CCTAGG 1 cut(s) 476
BanII GRGCYC 1 cut(s) 529
Bbv12I GWGCWC 1 cut(s) 529
BbvCI CCTCAGC 1 cut(s) 410
BbvI GCAGC 1 cut(s) 26
BccI CCATC 4 cut(s) 71, 81, 188, 316
BciT130I CCWGG 3 cut(s) 11, 113, 423
BciVI GTATCC 1 cut(s) 583
BcnI CCSGG 1 cut(s) 241
BfaI CTAG 3 cut(s) 18, 128, 477
BfuI GTATCC 1 cut(s) 583
BisI GCNGC 1 cut(s) 15
BlnI CCTAGG 1 cut(s) 476
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 4 cut(s) 11, 113, 241, 423
BmeT110I CYCGRG 1 cut(s) 619
BmgT120I GGNCC 1 cut(s) 450
BmiI GGNNCC 1 cut(s) 452
BmrFI CCNGG 4 cut(s) 11, 113, 241, 423
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 3 cut(s) 91, 140, 459
BmtI GCTAGC 1 cut(s) 131
BmuI ACTGGG 1 cut(s) 288
Bpu10I CCTNAGC 1 cut(s) 410
BpuMI CCSGG 1 cut(s) 241
BsaAI YACGTR 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 476
BsaXI ACNNNNNCTCC 4 cut(s) 163, 193, 293, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 575
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 283
BseBI CCWGG 3 cut(s) 11, 113, 423
BseDI CCNNGG 1 cut(s) 476
BseLI CCNNNNNNNGG 1 cut(s) 575
BseMII CTCAG 4 cut(s) 73, 74, 401, 542
BseNI ACTGG 1 cut(s) 283
BseXI GCAGC 1 cut(s) 26
Bsh1236I CGCG 2 cut(s) 390, 502
BshFI GGCC 3 cut(s) 57, 111, 451
BsiHKAI GWGCWC 1 cut(s) 529
BsiHKCI CYCGRG 1 cut(s) 619
BsiSI CCGG 2 cut(s) 54, 240
BslI CCNNNNNNNGG 1 cut(s) 575
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 3 cut(s) 57, 111, 451
BsoBI CYCGRG 1 cut(s) 619
Bsp1286I GDGCHC 1 cut(s) 529
Bsp143I GATC 4 cut(s) 316, 331, 445, 565
BspACI CCGC 1 cut(s) 500
BspANI GGCC 3 cut(s) 57, 111, 451
BspCNI CTCAG 4 cut(s) 72, 75, 402, 541
BspFNI CGCG 2 cut(s) 390, 502
BspLI GGNNCC 1 cut(s) 452
BspOI GCTAGC 1 cut(s) 131
BspPI GGATC 2 cut(s) 326, 560
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 1 cut(s) 283
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 476
BssMI GATC 4 cut(s) 316, 331, 445, 565
BssT1I CCWWGG 1 cut(s) 476
Bst2UI CCWGG 3 cut(s) 11, 113, 423
Bst4CI ACNGT 2 cut(s) 32, 148
BstBAI YACGTR 1 cut(s) 365
BstC8I GCNNGC 3 cut(s) 7, 55, 129
BstDEI CTNAG 4 cut(s) 59, 83, 410, 528
BstFNI CGCG 2 cut(s) 390, 502
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 4 cut(s) 319, 334, 448, 568
BstMBI GATC 4 cut(s) 316, 331, 445, 565
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 3 cut(s) 11, 113, 423
BstSCI CCNGG 4 cut(s) 9, 111, 239, 421
BstSNI TACGTA 1 cut(s) 365
BstUI CGCG 2 cut(s) 390, 502
BstV1I GCAGC 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 331
BstXI CCANNNNNNTGG 1 cut(s) 119
BstYI RGATCY 1 cut(s) 331
BsuI GTATCC 1 cut(s) 583
BsuRI GGCC 3 cut(s) 57, 111, 451
BtgZI GCGATG 1 cut(s) 405
Cac8I GCNNGC 3 cut(s) 7, 55, 129
CfoI GCGC 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 450
CseI GACGC 1 cut(s) 223
Csp6I GTAC 1 cut(s) 504
CviAII CATG 1 cut(s) 37
CviQI GTAC 1 cut(s) 504
DdeI CTNAG 4 cut(s) 59, 83, 410, 528
DpnI GATC 4 cut(s) 318, 333, 447, 567
DpnII GATC 4 cut(s) 316, 331, 445, 565
Ecl136II GAGCTC 1 cut(s) 527
Eco105I TACGTA 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 476
Eco24I GRGCYC 1 cut(s) 529
Eco53kI GAGCTC 1 cut(s) 527
Eco57I CTGAAG 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 619
EcoICRI GAGCTC 1 cut(s) 527
EcoRII CCWGG 3 cut(s) 9, 111, 421
EcoT14I CCWWGG 1 cut(s) 476
EcoT38I GRGCYC 1 cut(s) 529
ErhI CCWWGG 1 cut(s) 476
FaeI CATG 1 cut(s) 40
FaiI YATR 9 cut(s) 38, 175, 203, 276, 285, 368, 463, 465, 638
FatI CATG 1 cut(s) 36
FauNDI CATATG 1 cut(s) 463
Fnu4HI GCNGC 1 cut(s) 15
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 3 cut(s) 18, 128, 477
GlaI GCGC 1 cut(s) 389
GluI GCNGC 1 cut(s) 15
HaeIII GGCC 3 cut(s) 57, 111, 451
HapII CCGG 2 cut(s) 54, 240
HgaI GACGC 1 cut(s) 223
HhaI GCGC 1 cut(s) 390
Hin1II CATG 1 cut(s) 40
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HpaII CCGG 2 cut(s) 54, 240
HphI GGTGA 3 cut(s) 229, 455, 662
Hpy166II GTNNAC 1 cut(s) 431
Hpy188I TCNGA 6 cut(s) 62, 84, 297, 321, 524, 531
Hpy188III TCNNGA 2 cut(s) 74, 188
Hpy8I GTNNAC 1 cut(s) 431
Hpy99I CGWCG 1 cut(s) 576
HpyAV CCTTC 4 cut(s) 117, 292, 580, 647
HpyCH4III ACNGT 2 cut(s) 32, 148
HpyCH4IV ACGT 3 cut(s) 64, 308, 364
HpyCH4V TGCA 3 cut(s) 207, 221, 496
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 4 cut(s) 59, 83, 410, 528
HpySE526I ACGT 3 cut(s) 64, 308, 364
Hsp92II CATG 1 cut(s) 40
HspAI GCGC 1 cut(s) 388
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Kzo9I GATC 4 cut(s) 316, 331, 445, 565
LpnPI CCDG 8 cut(s) 23, 67, 98, 125, 253, 264, 408, 435
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 3 cut(s) 91, 140, 459
MaeI CTAG 3 cut(s) 18, 128, 477
MaeII ACGT 3 cut(s) 64, 308, 364
MaeIII GTNAC 3 cut(s) 32, 235, 360
MalI GATC 4 cut(s) 318, 333, 447, 567
MboI GATC 4 cut(s) 316, 331, 445, 565
MboII GAAGA 1 cut(s) 52
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 529
MluCI AATT 4 cut(s) 150, 383, 599, 613
MnlI CCTC 3 cut(s) 68, 297, 405
MroNI GCCGGC 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 345
MseI TTAA 3 cut(s) 27, 69, 311
MspI CCGG 2 cut(s) 54, 240
MspR9I CCNGG 4 cut(s) 11, 113, 241, 423
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 3 cut(s) 11, 113, 423
MvnI CGCG 2 cut(s) 390, 502
MwoI GCNNNNNNNGC 1 cut(s) 11
NaeI GCCGGC 1 cut(s) 55
NciI CCSGG 1 cut(s) 241
NdeI CATATG 1 cut(s) 463
NdeII GATC 4 cut(s) 316, 331, 445, 565
NgoMIV GCCGGC 1 cut(s) 53
NheI GCTAGC 1 cut(s) 127
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 1 cut(s) 452
NmuCI GTSAC 1 cut(s) 235
PaeR7I CTCGAG 1 cut(s) 619
PctI GAATGC 1 cut(s) 223
PdiI GCCGGC 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 345
PfoI TCCNGGA 1 cut(s) 421
PkrI GCNGC 1 cut(s) 16
Ppu21I YACGTR 1 cut(s) 365
PshBI ATTAAT 1 cut(s) 69
Psp124BI GAGCTC 1 cut(s) 529
Psp6I CCWGG 3 cut(s) 9, 111, 421
PspGI CCWGG 3 cut(s) 9, 111, 421
PspN4I GGNNCC 1 cut(s) 452
PspPI GGNCC 1 cut(s) 450
PspXI VCTCGAGB 1 cut(s) 619
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 1 cut(s) 505
RsaNI GTAC 1 cut(s) 504
SacI GAGCTC 1 cut(s) 529
SaqAI TTAA 3 cut(s) 27, 69, 311
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 4 cut(s) 316, 331, 445, 565
Sau96I GGNCC 1 cut(s) 450
ScrFI CCNGG 4 cut(s) 11, 113, 241, 423
SduI GDGCHC 1 cut(s) 529
SfaNI GCATC 3 cut(s) 91, 140, 459
Sfr274I CTCGAG 1 cut(s) 619
SlaI CTCGAG 1 cut(s) 619
SmlI CTYRAG 1 cut(s) 619
SmoI CTYRAG 1 cut(s) 619
SnaBI TACGTA 1 cut(s) 365
Sse9I AATT 4 cut(s) 150, 383, 599, 613
SsiI CCGC 1 cut(s) 500
SspMI CTAG 3 cut(s) 18, 128, 477
SstI GAGCTC 1 cut(s) 529
StyD4I CCNGG 4 cut(s) 9, 111, 239, 421
StyI CCWWGG 1 cut(s) 476
TaaI ACNGT 2 cut(s) 32, 148
TaiI ACGT 3 cut(s) 67, 311, 367
TaqI TCGA 3 cut(s) 99, 187, 620
TasI AATT 4 cut(s) 150, 383, 599, 613
Tru1I TTAA 3 cut(s) 27, 69, 311
Tru9I TTAA 3 cut(s) 27, 69, 311
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 53, 653
TspGWI ACGGA 1 cut(s) 353
VspI ATTAAT 1 cut(s) 69
XhoI CTCGAG 1 cut(s) 619
XmaJI CCTAGG 1 cut(s) 476
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 3 cut(s) 18, 128, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.