Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041666.1

Orthogroup ID

OG0006270

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1319

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041666.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

aaagctgttgccggcctgagacggattaatcttgatgggctgcggtggaaagtgtttgatgccaagggccaggttcttggaaggctagcttctcaaatatctactgttattcaaggcaaggataaaccgacgtatgctccaaatcgagatgatggagatatgtgcattgtgctgaatgcgaaggatatttgtgtcacagggagaaaactaaccgataaagtttatcattggcataccgggtatgttgggcacctcaaggaaaggactttgaaggatcagatggtgaaagaccctacagaagtcattcgcaaagctgtattgcgcatgcttcctaagaacaaattgcgtgacgatagagatagaaagctgagaatttttgctggcggtgaacacccatttggtgataggccccttgaaccatatctgatgcccccgcgaaaagtaagggaaatgcgaccccgtacaagacgagccttggtcagagctcagataaaggctgaacagcaacaacaggatattaatgatccacggaagggcaggaagaaggatagagtcgaagtaagcgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L13

Protein Analysis

189

Amino Acids

21.87

Weight (kDa)

10.35

Isoelectric Point (pI)

31.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01790 AT3G01790 AT3G01790
fragaria_vesca	FvH4_6g53020
malus_domestica	MD17G1015300.v1.1
prunus_persica	Prupe.3G148400_v2.0.a1 Prupe.3G148400_v2.0.a1 Prupe.3G148400_v2.0.a1
pyrus_communis	pycom17g01250
rosa_chinensis	RchiOBHm_Chr2g0174761 RchiOBHm_Chr4g0409361
rosa_laevigata	RLG00000008566 RLG00000022293
rosa_multiflora	Rmu_sc0023882.1_g000001 Rmu_sc0041666.1_g000001
rosa_roxburghii	Rroxscaffold_2G00077760 Rroxscaffold_5G00353880
rosa_rugosa	Rorug02G0579300 Rorug04G0093200
rosa_samantha	Rh2BG671600 Rh2CG634700 Rh2DG685000 Rh4AG155800 Rh4CG165000 Rh4DG148800
rosa_wichuraiana	Rw2G054130 Rw4G012750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	249
AccII	CGCG	1 cut(s)	436
AciI	CCGC	3 cut(s)	43, 384, 434
AclWI	GGATC	2 cut(s)	282, 518
AcsI	RAATTY	1 cut(s)	372
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	1 cut(s)	533
AgsI	TTSAA	3 cut(s)	113, 271, 416
AjnI	CCWGG	1 cut(s)	69
AjuI	GAANNNNNNNTTGG	2 cut(s)	381, 413
AluBI	AGCT	5 cut(s)	5, 89, 314, 367, 485
AluI	AGCT	5 cut(s)	5, 89, 314, 367, 485
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	2 cut(s)	282, 518
AoxI	GGCC	3 cut(s)	13, 67, 407
ApeKI	GCWGC	1 cut(s)	40
ApoI	RAATTY	1 cut(s)	372
AseI	ATTAAT	2 cut(s)	27, 519
Asp700I	GAANNNNTTC	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	2 cut(s)	67, 408
AsuC2I	CCSGG	1 cut(s)	238
AsuHPI	GGTGA	3 cut(s)	295, 398, 413
AsuNHI	GCTAGC	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	487
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	3 cut(s)	29, 146, 274
BciT130I	CCWGG	1 cut(s)	71
BcnI	CCSGG	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	294
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
Bme1390I	CCNGG	2 cut(s)	71, 238
BmgT120I	GGNCC	2 cut(s)	67, 408
BmiI	GGNNCC	2 cut(s)	251, 410
BmrFI	CCNGG	2 cut(s)	71, 238
BmsI	GCATC	2 cut(s)	49, 417
BmtI	GCTAGC	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	238
BsaJI	CCNNGG	3 cut(s)	63, 474, 527
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	533
Bse118I	RCCGGY	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	3 cut(s)	63, 474, 527
BseLI	CCNNNNNNNGG	1 cut(s)	533
BseMII	CTCAG	3 cut(s)	8, 359, 500
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	436
BshFI	GGCC	3 cut(s)	15, 69, 409
BshNI	GGYRCC	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	487
BsiSI	CCGG	2 cut(s)	12, 237
BslI	CCNNNNNNNGG	1 cut(s)	533
BsmAI	GTCTC	1 cut(s)	13
BsmBI	CGTCTC	1 cut(s)	13
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	3 cut(s)	15, 69, 409
Bsp1286I	GDGCHC	2 cut(s)	252, 487
Bsp143I	GATC	2 cut(s)	274, 523
BspACI	CCGC	3 cut(s)	43, 384, 434
BspANI	GGCC	3 cut(s)	15, 69, 409
BspCNI	CTCAG	3 cut(s)	9, 360, 499
BspFNI	CGCG	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	251, 410
BspOI	GCTAGC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	282, 518
BspT107I	GGYRCC	1 cut(s)	249
BsrFI	RCCGGY	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	3 cut(s)	63, 474, 527
BssMI	GATC	2 cut(s)	274, 523
BssT1I	CCWWGG	2 cut(s)	63, 474
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	106
BstC8I	GCNNGC	4 cut(s)	13, 87, 326, 382
BstDEI	CTNAG	4 cut(s)	17, 333, 368, 486
BstDSI	CCRYGG	1 cut(s)	527
BstFNI	CGCG	1 cut(s)	436
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	2 cut(s)	277, 526
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	2 cut(s)	274, 523
BstNI	CCWGG	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	328
BstSCI	CCNGG	2 cut(s)	69, 236
BstSFI	CTRYAG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	252
BstUI	CGCG	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	27
BstXI	CCANNNNNNTGG	1 cut(s)	77
BsuRI	GGCC	3 cut(s)	15, 69, 409
BtgI	CCRYGG	1 cut(s)	527
Cac8I	GCNNGC	4 cut(s)	13, 87, 326, 382
CfoI	GCGC	1 cut(s)	324
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	67, 408
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	1 cut(s)	325
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	4 cut(s)	17, 333, 368, 486
DpnI	GATC	2 cut(s)	276, 525
DpnII	GATC	2 cut(s)	274, 523
Ecl136II	GAGCTC	1 cut(s)	485
Eco130I	CCWWGG	2 cut(s)	63, 474
Eco24I	GRGCYC	1 cut(s)	487
Eco53kI	GAGCTC	1 cut(s)	485
EcoICRI	GAGCTC	1 cut(s)	485
EcoO109I	RGGNCCY	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	2 cut(s)	63, 474
EcoT38I	GRGCYC	1 cut(s)	487
ErhI	CCWWGG	2 cut(s)	63, 474
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	1 cut(s)	328
FaiI	YATR	7 cut(s)	135, 161, 234, 243, 326, 421, 568
FalI	AAGNNNNNCTT	2 cut(s)	73, 105
FatI	CATG	1 cut(s)	324
FauI	CCCGC	1 cut(s)	441
Fnu4HI	GCNGC	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	487
Fsp4HI	GCNGC	1 cut(s)	41
FspBI	CTAG	1 cut(s)	86
FspI	TGCGCA	1 cut(s)	323
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	1 cut(s)	41
HaeIII	GGCC	3 cut(s)	15, 69, 409
HapII	CCGG	2 cut(s)	12, 237
HhaI	GCGC	1 cut(s)	324
Hin1II	CATG	1 cut(s)	328
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HinfI	GANTC	1 cut(s)	552
HpaII	CCGG	2 cut(s)	12, 237
HphI	GGTGA	3 cut(s)	295, 398, 413
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	4 cut(s)	279, 426, 482, 489
Hpy188III	TCNNGA	2 cut(s)	32, 146
Hpy8I	GTNNAC	1 cut(s)	389
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	5 cut(s)	75, 175, 265, 526, 538
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	1 cut(s)	165
HpyF3I	CTNAG	4 cut(s)	17, 333, 368, 486
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	328
HspAI	GCGC	1 cut(s)	322
KroI	GCCGGC	1 cut(s)	11
KroNI	GCCGGC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	274, 523
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	9 cut(s)	25, 29, 56, 83, 183, 250, 366, 497, 523
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	2 cut(s)	49, 417
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	2 cut(s)	193, 347
MalI	GATC	2 cut(s)	276, 525
MboI	GATC	2 cut(s)	274, 523
MboII	GAAGA	1 cut(s)	553
MhlI	GDGCHC	2 cut(s)	252, 487
MluCI	AATT	2 cut(s)	341, 372
MlyI	GAGTC	1 cut(s)	561
MnlI	CCTC	1 cut(s)	263
MroNI	GCCGGC	1 cut(s)	11
MroXI	GAANNNNTTC	1 cut(s)	303
MseI	TTAA	2 cut(s)	27, 519
MspI	CCGG	2 cut(s)	12, 237
MspR9I	CCNGG	2 cut(s)	71, 238
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	1 cut(s)	436
NaeI	GCCGGC	1 cut(s)	13
NciI	CCSGG	1 cut(s)	238
NdeII	GATC	2 cut(s)	274, 523
NgoMIV	GCCGGC	1 cut(s)	11
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	2 cut(s)	251, 410
NmuCI	GTSAC	2 cut(s)	193, 347
NsbI	TGCGCA	1 cut(s)	323
NspI	RCATGY	1 cut(s)	328
PaeI	GCATGC	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	1 cut(s)	561
PctI	GAATGC	1 cut(s)	181
PdiI	GCCGGC	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	303
PkrI	GCNGC	1 cut(s)	42
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
PshBI	ATTAAT	2 cut(s)	27, 519
Psp124BI	GAGCTC	1 cut(s)	487
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	251, 410
PspPI	GGNCC	2 cut(s)	67, 408
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
SacI	GAGCTC	1 cut(s)	487
SaqAI	TTAA	2 cut(s)	27, 519
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	2 cut(s)	274, 523
Sau96I	GGNCC	2 cut(s)	67, 408
SchI	GAGTC	1 cut(s)	561
ScrFI	CCNGG	2 cut(s)	71, 238
SduI	GDGCHC	2 cut(s)	252, 487
SetI	ASST	8 cut(s)	7, 75, 91, 134, 255, 316, 369, 487
SfaNI	GCATC	2 cut(s)	49, 417
SfcI	CTRYAG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SphI	GCATGC	1 cut(s)	328
Sse9I	AATT	2 cut(s)	341, 372
SsiI	CCGC	3 cut(s)	43, 384, 434
SspMI	CTAG	1 cut(s)	86
SstI	GAGCTC	1 cut(s)	487
StyD4I	CCNGG	2 cut(s)	69, 236
StyI	CCWWGG	2 cut(s)	63, 474
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	2 cut(s)	145, 555
TasI	AATT	2 cut(s)	341, 372
Tru1I	TTAA	2 cut(s)	27, 519
Tru9I	TTAA	2 cut(s)	27, 519
TseFI	GTSAC	2 cut(s)	193, 347
TseI	GCWGC	1 cut(s)	40
Tsp45I	GTSAC	2 cut(s)	193, 347
TspGWI	ACGGA	2 cut(s)	37, 544
VspI	ATTAAT	2 cut(s)	27, 519
XapI	RAATTY	1 cut(s)	372
XceI	RCATGY	1 cut(s)	328
XmnI	GAANNNNTTC	1 cut(s)	303
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.