AT3G02220

Uncharacterized conserved protein (DUF2039)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006795
Physical Location & Seq
Reverse (-)
412041 .. 413742
1702 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02220.1

Sequence Viewer

Length: 684 bp
ATGGGCTCACGGCAAGGACCACCGAAGCATCAGAACAAATTCGCCTGGGTTCCCAAAGCCGGCGTCAAGATCAACGAAACGGAAGTCGGCGGGAGATTTAGACCATTATCCGAGATTACCGGAGTTTGCTACCGATGTCGAGAGCAGATCGCCTGGAAACGCAAATACGGCAAATACAAAACCCTAACTGAAGCCACCAAATGTCAGAAGTGTACAAAGCGAAATGTTCGTCAAGCATACCATAAGTTATGCCCTGGTTGTGCCAAGGAGCAAAAGGTGTGTGCAAAGTGTTGTCAAAGTGTTGATCAAATCCTTGGAAGAGATATTTACGAAGTAGAGGCTGAACAGAAGCTGCTTGATGAGACTATCAAGAATGCTAGGGAAAGAGATCGAAGGACCCTATTACGTGCTATGAACAAAGATAACAAACCAAATAAATCAGATGAAGAAGCGTCAAGGAGTGATAGCAGCAAGGTTGGTGATGTGTTTCCCTCAACTTCCCTTGAAGAATATGCAAACAAGTCCGGAAGAGTTAGCGGGATTATTGGTCATGGTAGTGTGCCTGATCATGCCCATGATGATGCTAGTGGACCTGAATCAGATGAGGATGACAATGTTGGTGATGATGAGCATGATTTGCGCGAAGACAGTGATGAAAATGAGCAATCTCAACTGCAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2039

Protein Analysis

227

Amino Acids

25.62

Weight (kDa)

6.99

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2039 PF10217 9 - 99 9.7e-27 Uncharacterized conserved protein (DUF2039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 642
AccIII TCCGGA 1 cut(s) 524
AciI CCGC 2 cut(s) 90, 537
AcsI RAATTY 1 cut(s) 38
AcuI CTGAAG 1 cut(s) 210
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 1 cut(s) 506
AjnI CCWGG 3 cut(s) 44, 152, 253
AluBI AGCT 1 cut(s) 352
AluI AGCT 1 cut(s) 352
Alw26I GTCTC 1 cut(s) 356
AlwNI CAGNNNCTG 1 cut(s) 352
Aor13HI TCCGGA 1 cut(s) 524
ApeKI GCWGC 2 cut(s) 352, 468
ApoI RAATTY 1 cut(s) 38
ArsI GACNNNNNNTTYG 6 cut(s) 48, 69, 80, 101, 214, 246
Asp700I GAANNNNTTC 1 cut(s) 38
AspLEI GCGC 1 cut(s) 642
AspS9I GGNCC 3 cut(s) 17, 396, 590
AsuHPI GGTGA 2 cut(s) 491, 632
AvaII GGWCC 3 cut(s) 17, 396, 590
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 651
BbvI GCAGC 2 cut(s) 339, 480
BceAI ACGGC 2 cut(s) 26, 184
BciT130I CCWGG 3 cut(s) 46, 154, 255
BclI TGATCA 2 cut(s) 304, 565
BcoDI GTCTC 1 cut(s) 356
BfaI CTAG 2 cut(s) 378, 585
BfmI CTRYAG 1 cut(s) 674
BisI GCNGC 2 cut(s) 353, 469
BlsI GCNGC 2 cut(s) 354, 470
Bme1390I CCNGG 3 cut(s) 46, 154, 255
Bme18I GGWCC 3 cut(s) 17, 396, 590
BmgT120I GGNCC 3 cut(s) 17, 396, 590
BmiI GGNNCC 2 cut(s) 51, 398
BmrFI CCNGG 3 cut(s) 46, 154, 255
BmsI GCATC 2 cut(s) 37, 571
BpiI GAAGAC 1 cut(s) 651
BsaAI YACGTR 1 cut(s) 407
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 4 cut(s) 45, 253, 264, 313
BsaWI WCCGGW 2 cut(s) 119, 524
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse118I RCCGGY 1 cut(s) 59
BseAI TCCGGA 1 cut(s) 524
BseBI CCWGG 3 cut(s) 46, 154, 255
BseDI CCNNGG 4 cut(s) 45, 253, 264, 313
BseGI GGATG 1 cut(s) 613
BseLI CCNNNNNNNGG 1 cut(s) 59
BseXI GCAGC 2 cut(s) 339, 480
Bsh1236I CGCG 1 cut(s) 642
BsiSI CCGG 3 cut(s) 60, 120, 525
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 356
BsmI GAATGC 1 cut(s) 379
Bsp1286I GDGCHC 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 524
Bsp1407I TGTACA 1 cut(s) 212
Bsp143I GATC 5 cut(s) 69, 147, 304, 388, 565
BspACI CCGC 2 cut(s) 90, 537
BspEI TCCGGA 1 cut(s) 524
BspFNI CGCG 1 cut(s) 642
BspLI GGNNCC 2 cut(s) 51, 398
BspMAI CTGCAG 1 cut(s) 678
BsrFI RCCGGY 1 cut(s) 59
BsrGI TGTACA 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 4 cut(s) 45, 253, 264, 313
BssMI GATC 5 cut(s) 69, 147, 304, 388, 565
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 2 cut(s) 264, 313
Bst2UI CCWGG 3 cut(s) 46, 154, 255
Bst4CI ACNGT 1 cut(s) 650
Bst6I CTCTTC 2 cut(s) 313, 523
BstACI GRCGYC 1 cut(s) 63
BstAPI GCANNNNNTGC 1 cut(s) 637
BstAUI TGTACA 1 cut(s) 212
BstBAI YACGTR 1 cut(s) 407
BstC8I GCNNGC 1 cut(s) 61
BstF5I GGATG 1 cut(s) 613
BstFNI CGCG 1 cut(s) 642
BstHHI GCGC 1 cut(s) 642
BstKTI GATC 5 cut(s) 72, 150, 307, 391, 568
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 5 cut(s) 69, 147, 304, 388, 565
BstMWI GCNNNNNNNGC 2 cut(s) 168, 637
BstNI CCWGG 3 cut(s) 46, 154, 255
BstSCI CCNGG 3 cut(s) 44, 152, 253
BstSFI CTRYAG 1 cut(s) 674
BstUI CGCG 1 cut(s) 642
BstV1I GCAGC 2 cut(s) 339, 480
BstV2I GAAGAC 1 cut(s) 651
BtsCI GGATG 1 cut(s) 613
BtsIMutI CAGTG 1 cut(s) 655
Cac8I GCNNGC 1 cut(s) 61
CaiI CAGNNNCTG 1 cut(s) 352
CfoI GCGC 1 cut(s) 642
Cfr10I RCCGGY 1 cut(s) 59
Cfr13I GGNCC 3 cut(s) 17, 396, 590
CseI GACGC 2 cut(s) 52, 441
Csp6I GTAC 1 cut(s) 213
CviAII CATG 4 cut(s) 551, 569, 575, 632
CviJI RGCY 5 cut(s) 6, 59, 194, 341, 352
CviKI_1 RGCY 5 cut(s) 6, 59, 194, 341, 352
CviQI GTAC 1 cut(s) 213
DpnI GATC 5 cut(s) 71, 149, 306, 390, 567
DpnII GATC 5 cut(s) 69, 147, 304, 388, 565
Eam1104I CTCTTC 2 cut(s) 313, 523
EarI CTCTTC 2 cut(s) 313, 523
Eco130I CCWWGG 2 cut(s) 264, 313
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 3 cut(s) 17, 396, 590
Eco57I CTGAAG 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 396
EcoRII CCWGG 3 cut(s) 44, 152, 253
EcoT14I CCWWGG 2 cut(s) 264, 313
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 2 cut(s) 264, 313
FaeI CATG 4 cut(s) 554, 572, 578, 635
FaiI YATR 9 cut(s) 238, 243, 250, 413, 513, 552, 570, 576, 633
FatI CATG 4 cut(s) 550, 568, 574, 631
FauI CCCGC 2 cut(s) 83, 530
FbaI TGATCA 2 cut(s) 304, 565
Fnu4HI GCNGC 2 cut(s) 353, 469
FokI GGATG 1 cut(s) 620
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 353, 469
FspBI CTAG 2 cut(s) 378, 585
GlaI GCGC 1 cut(s) 641
GluI GCNGC 2 cut(s) 353, 469
HapII CCGG 3 cut(s) 60, 120, 525
HgaI GACGC 2 cut(s) 52, 441
HhaI GCGC 1 cut(s) 642
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 4 cut(s) 554, 572, 578, 635
Hin6I GCGC 1 cut(s) 640
HinP1I GCGC 1 cut(s) 640
HinfI GANTC 1 cut(s) 596
HpaII CCGG 3 cut(s) 60, 120, 525
HphI GGTGA 2 cut(s) 491, 632
Hpy166II GTNNAC 2 cut(s) 213, 590
Hpy188I TCNGA 5 cut(s) 33, 112, 207, 442, 601
Hpy188III TCNNGA 4 cut(s) 67, 140, 370, 525
Hpy8I GTNNAC 2 cut(s) 213, 590
HpyAV CCTTC 1 cut(s) 387
HpyCH4III ACNGT 1 cut(s) 650
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 3 cut(s) 284, 515, 676
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 637
HpySE526I ACGT 1 cut(s) 406
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 4 cut(s) 554, 572, 578, 635
HspAI GCGC 1 cut(s) 640
Kpn2I TCCGGA 1 cut(s) 524
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Ksp22I TGATCA 2 cut(s) 304, 565
Kzo9I GATC 5 cut(s) 69, 147, 304, 388, 565
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 2 cut(s) 339, 480
LweI GCATC 2 cut(s) 37, 571
MaeI CTAG 2 cut(s) 378, 585
MaeII ACGT 1 cut(s) 406
MalI GATC 5 cut(s) 71, 149, 306, 390, 567
MboI GATC 5 cut(s) 69, 147, 304, 388, 565
MboII GAAGA 5 cut(s) 330, 458, 518, 540, 656
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 38
MnlI CCTC 3 cut(s) 331, 502, 598
MroI TCCGGA 1 cut(s) 524
MroNI GCCGGC 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 38
MslI CAYNNNNRTG 3 cut(s) 555, 573, 579
MspI CCGG 3 cut(s) 60, 120, 525
MspR9I CCNGG 3 cut(s) 46, 154, 255
Mva1269I GAATGC 1 cut(s) 379
MvaI CCWGG 3 cut(s) 46, 154, 255
MvnI CGCG 1 cut(s) 642
MwoI GCNNNNNNNGC 2 cut(s) 168, 637
NaeI GCCGGC 1 cut(s) 61
NdeII GATC 5 cut(s) 69, 147, 304, 388, 565
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 4 cut(s) 554, 572, 578, 635
NlaIV GGNNCC 2 cut(s) 51, 398
PctI GAATGC 1 cut(s) 379
PdiI GCCGGC 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 596
PkrI GCNGC 2 cut(s) 354, 470
Ppu21I YACGTR 1 cut(s) 407
PpuMI RGGWCCY 1 cut(s) 396
Psp5II RGGWCCY 1 cut(s) 396
Psp6I CCWGG 3 cut(s) 44, 152, 253
PspGI CCWGG 3 cut(s) 44, 152, 253
PspN4I GGNNCC 2 cut(s) 51, 398
PspPI GGNCC 3 cut(s) 17, 396, 590
PspPPI RGGWCCY 1 cut(s) 396
PstI CTGCAG 1 cut(s) 678
PstNI CAGNNNCTG 1 cut(s) 352
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
RseI CAYNNNNRTG 3 cut(s) 555, 573, 579
SatI GCNGC 2 cut(s) 353, 469
Sau3AI GATC 5 cut(s) 69, 147, 304, 388, 565
Sau96I GGNCC 3 cut(s) 17, 396, 590
ScrFI CCNGG 3 cut(s) 46, 154, 255
SduI GDGCHC 1 cut(s) 8
SetI ASST 5 cut(s) 279, 354, 409, 477, 595
SfaNI GCATC 2 cut(s) 37, 571
SfcI CTRYAG 1 cut(s) 674
SinI GGWCC 3 cut(s) 17, 396, 590
SmiMI CAYNNNNRTG 3 cut(s) 555, 573, 579
Sse9I AATT 1 cut(s) 38
SsiI CCGC 2 cut(s) 90, 537
SspMI CTAG 2 cut(s) 378, 585
StyD4I CCNGG 3 cut(s) 44, 152, 253
StyI CCWWGG 2 cut(s) 264, 313
TaaI ACNGT 1 cut(s) 650
TaiI ACGT 1 cut(s) 409
TaqI TCGA 2 cut(s) 139, 391
TasI AATT 1 cut(s) 38
TatI WGTACW 1 cut(s) 212
TfiI GAWTC 1 cut(s) 596
TscAI CASTG 1 cut(s) 655
TseI GCWGC 2 cut(s) 352, 468
TspDTI ATGAA 3 cut(s) 428, 459, 669
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 1 cut(s) 655
VpaK11BI GGWCC 3 cut(s) 17, 396, 590
XapI RAATTY 1 cut(s) 38
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 2 cut(s) 378, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.