Rw0G008400

protein C9orf85 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00319
OG0006795
Physical Location & Seq
Forward (+)
18126 .. 19291
1166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G008400.1

Sequence Viewer

Length: 564 bp
ATGATGATCAACGGTCGGCACAAGAACAAGTTCGCTTGGAAACCCAACGCCGGCGTCAAAATCAACGAAACCGAGGTCGGAGGCCGGTTCCGGCCGCTGTCGGAGATCACCGGCGTCTGCCAACGCTGCAAGGAACAGATCGAGTGGAAGCGCAAGTACGGCAAGTACAAGCCCCTAACGGAACCGACCAAGTGCCAACGTTGTACCAAACGCGCCCCTTGCGCCAAGGAACACGGCGTCTGCGCCAAGTGTTGTTGTCGCAACGAGCGGATCGTCGGGAAAGACCCCGCCGAGGTTGAAGCCGAGCAGAAGGAGCTCCAGGAGGCTATCAAGAATGCAAGAGAGAGGGATAGGAGGACTCTGCTAAGAGCTATGAATGCAGGTAAATCGATGAAGACTGCGACTGAGAAAGAAGAGAAGGGAGACAAGGCTGGGGATTCGGCACTCTCTGCTTCGCTAGAGGAACATGCAGAGGCAACTAGAGATGATGAGGGTGATTCTGATGGGGATGATGATGATGAAGAAGAAGAAGAAGAAGAAGAGGATGAGGAGGGTCGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2039

Protein Analysis

187

Amino Acids

21.21

Weight (kDa)

5.3

Isoelectric Point (pI)

50.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2039 PF10217 6 - 86 1.7e-16 Uncharacterized conserved protein (DUF2039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 371
AccBSI CCGCTC 1 cut(s) 268
AccII CGCG 1 cut(s) 213
AciI CCGC 3 cut(s) 95, 268, 288
AclI AACGTT 1 cut(s) 199
AclWI GGATC 1 cut(s) 278
AcoI YGGCCR 1 cut(s) 92
AcyI GRCGYC 3 cut(s) 54, 114, 237
AfaI GTAC 3 cut(s) 158, 167, 205
AfiI CCNNNNNNNGG 2 cut(s) 50, 292
AgsI TTSAA 1 cut(s) 299
AjnI CCWGG 1 cut(s) 318
AluBI AGCT 2 cut(s) 316, 371
AluI AGCT 2 cut(s) 316, 371
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 417
AlwI GGATC 1 cut(s) 278
AoxI GGCC 2 cut(s) 82, 92
ApeKI GCWGC 1 cut(s) 126
ArsI GACNNNNNNTTYG 2 cut(s) 60, 92
Asp700I GAANNNNTTC 1 cut(s) 29
AspLEI GCGC 4 cut(s) 153, 215, 224, 245
AsuHPI GGTGA 2 cut(s) 100, 506
BanII GRGCYC 1 cut(s) 318
BarI GAAGNNNNNNTAC 2 cut(s) 140, 172
BbsI GAAGAC 1 cut(s) 401
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 113
BccI CCATC 1 cut(s) 497
BceAI ACGGC 2 cut(s) 175, 250
BcgI CGANNNNNNTGC 2 cut(s) 369, 403
BciT130I CCWGG 1 cut(s) 320
BclI TGATCA 1 cut(s) 6
BcoDI GTCTC 1 cut(s) 417
BfaI CTAG 2 cut(s) 458, 480
BfuAI ACCTGC 1 cut(s) 371
BisI GCNGC 2 cut(s) 95, 127
BlsI GCNGC 2 cut(s) 96, 128
Bme1390I CCNGG 1 cut(s) 320
BmiI GGNNCC 2 cut(s) 89, 183
BmrFI CCNGG 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 401
BpmI CTGGAG 1 cut(s) 302
Bsa29I ATCGAT 1 cut(s) 389
BsaHI GRCGYC 3 cut(s) 54, 114, 237
BsaJI CCNNGG 3 cut(s) 72, 225, 291
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 292
Bse118I RCCGGY 3 cut(s) 50, 84, 110
BseBI CCWGG 1 cut(s) 320
BseCI ATCGAT 1 cut(s) 389
BseDI CCNNGG 3 cut(s) 72, 225, 291
BseGI GGATG 2 cut(s) 514, 550
BseLI CCNNNNNNNGG 2 cut(s) 50, 292
BseMII CTCAG 1 cut(s) 396
BseRI GAGGAG 1 cut(s) 563
BseX3I CGGCCG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 113
BseYI CCCAGC 1 cut(s) 431
Bsh1236I CGCG 1 cut(s) 213
Bsh1285I CGRYCG 2 cut(s) 16, 95
BshFI GGCC 2 cut(s) 84, 94
BshVI ATCGAT 1 cut(s) 389
BsiEI CGRYCG 2 cut(s) 16, 95
BsiHKAI GWGCWC 1 cut(s) 318
BsiSI CCGG 4 cut(s) 51, 85, 91, 111
BslI CCNNNNNNNGG 2 cut(s) 50, 292
BsmAI GTCTC 1 cut(s) 417
BsmI GAATGC 2 cut(s) 340, 382
BsnI GGCC 2 cut(s) 84, 94
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 4 cut(s) 6, 105, 138, 270
BspACI CCGC 3 cut(s) 95, 268, 288
BspANI GGCC 2 cut(s) 84, 94
BspCNI CTCAG 1 cut(s) 397
BspDI ATCGAT 1 cut(s) 389
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 89, 183
BspMI ACCTGC 1 cut(s) 371
BspPI GGATC 1 cut(s) 278
BsrBI CCGCTC 1 cut(s) 268
BsrFI RCCGGY 3 cut(s) 50, 84, 110
BssAI RCCGGY 3 cut(s) 50, 84, 110
BssECI CCNNGG 3 cut(s) 72, 225, 291
BssMI GATC 4 cut(s) 6, 105, 138, 270
BssNI GRCGYC 3 cut(s) 54, 114, 237
BssT1I CCWWGG 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 320
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 2 cut(s) 408, 534
BstACI GRCGYC 3 cut(s) 54, 114, 237
BstAPI GCANNNNNTGC 1 cut(s) 449
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 2 cut(s) 365, 405
BstF5I GGATG 2 cut(s) 514, 550
BstFNI CGCG 1 cut(s) 213
BstHHI GCGC 4 cut(s) 153, 215, 224, 245
BstKTI GATC 4 cut(s) 9, 108, 141, 273
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 4 cut(s) 6, 105, 138, 270
BstMCI CGRYCG 2 cut(s) 16, 95
BstMWI GCNNNNNNNGC 7 cut(s) 126, 159, 219, 221, 313, 377, 449
BstNI CCWGG 1 cut(s) 320
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 318
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 401
BstZI CGGCCG 1 cut(s) 92
Bsu15I ATCGAT 1 cut(s) 389
BsuRI GGCC 2 cut(s) 84, 94
BsuTUI ATCGAT 1 cut(s) 389
BtsCI GGATG 2 cut(s) 514, 550
BveI ACCTGC 1 cut(s) 371
Cac8I GCNNGC 1 cut(s) 52
CfoI GCGC 4 cut(s) 153, 215, 224, 245
Cfr10I RCCGGY 3 cut(s) 50, 84, 110
ClaI ATCGAT 1 cut(s) 389
CseI GACGC 3 cut(s) 43, 103, 226
Csp6I GTAC 3 cut(s) 157, 166, 204
CviAII CATG 1 cut(s) 467
CviJI RGCY 8 cut(s) 84, 94, 172, 302, 316, 326, 371, 431
CviKI_1 RGCY 8 cut(s) 84, 94, 172, 302, 316, 326, 371, 431
CviQI GTAC 3 cut(s) 157, 166, 204
DdeI CTNAG 2 cut(s) 365, 405
DpnI GATC 4 cut(s) 8, 107, 140, 272
DpnII GATC 4 cut(s) 6, 105, 138, 270
EaeI YGGCCR 1 cut(s) 92
EagI CGGCCG 1 cut(s) 92
Eam1104I CTCTTC 2 cut(s) 408, 534
EarI CTCTTC 2 cut(s) 408, 534
Ecl136II GAGCTC 1 cut(s) 316
EclXI CGGCCG 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 318
Eco52I CGGCCG 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 316
EcoICRI GAGCTC 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 318
EcoT14I CCWWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 1 cut(s) 470
FaiI YATR 2 cut(s) 374, 468
FatI CATG 1 cut(s) 466
FauI CCCGC 1 cut(s) 295
FbaI TGATCA 1 cut(s) 6
Fnu4HI GCNGC 2 cut(s) 95, 127
FokI GGATG 2 cut(s) 521, 557
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 2 cut(s) 95, 127
FspBI CTAG 2 cut(s) 458, 480
GlaI GCGC 4 cut(s) 152, 214, 223, 244
GluI GCNGC 2 cut(s) 95, 127
GsaI CCCAGC 1 cut(s) 435
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 2 cut(s) 84, 94
HapII CCGG 4 cut(s) 51, 85, 91, 111
HgaI GACGC 3 cut(s) 43, 103, 226
HhaI GCGC 4 cut(s) 153, 215, 224, 245
Hin1I GRCGYC 3 cut(s) 54, 114, 237
Hin1II CATG 1 cut(s) 470
Hin6I GCGC 4 cut(s) 151, 213, 222, 243
HinP1I GCGC 4 cut(s) 151, 213, 222, 243
HinfI GANTC 3 cut(s) 358, 437, 497
HpaII CCGG 4 cut(s) 51, 85, 91, 111
HphI GGTGA 2 cut(s) 100, 506
Hpy188I TCNGA 3 cut(s) 80, 103, 502
Hpy188III TCNNGA 2 cut(s) 277, 331
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 2 cut(s) 304, 412
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 4 cut(s) 129, 338, 380, 470
HpyF10VI GCNNNNNNNGC 7 cut(s) 126, 159, 219, 221, 313, 377, 449
HpyF3I CTNAG 2 cut(s) 365, 405
HpySE526I ACGT 1 cut(s) 199
Hsp92I GRCGYC 3 cut(s) 54, 114, 237
Hsp92II CATG 1 cut(s) 470
HspAI GCGC 4 cut(s) 151, 213, 222, 243
KroI GCCGGC 1 cut(s) 50
KroNI GCCGGC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 4 cut(s) 6, 105, 138, 270
LmnI GCTCC 2 cut(s) 313, 321
LpnPI CCDG 8 cut(s) 64, 98, 104, 124, 305, 332, 366, 417
Lsp1109I GCAGC 1 cut(s) 113
MaeI CTAG 2 cut(s) 458, 480
MaeII ACGT 1 cut(s) 199
MalI GATC 4 cut(s) 8, 107, 140, 272
MbiI CCGCTC 1 cut(s) 268
MboI GATC 4 cut(s) 6, 105, 138, 270
MboII GAAGA 9 cut(s) 406, 425, 533, 536, 539, 542, 545, 548, 551
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 1 cut(s) 559
MlyI GAGTC 1 cut(s) 352
MmeI TCCRAC 2 cut(s) 58, 81
MreI CGCCGGCG 1 cut(s) 50
MroNI GCCGGC 1 cut(s) 50
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 1 cut(s) 562
MspA1I CMGCKG 1 cut(s) 97
MspI CCGG 4 cut(s) 51, 85, 91, 111
MspR9I CCNGG 1 cut(s) 320
Mva1269I GAATGC 2 cut(s) 340, 382
MvaI CCWGG 1 cut(s) 320
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 7 cut(s) 126, 159, 219, 221, 313, 377, 449
NaeI GCCGGC 1 cut(s) 52
NdeII GATC 4 cut(s) 6, 105, 138, 270
NgoMIV GCCGGC 1 cut(s) 50
NlaIII CATG 1 cut(s) 470
NlaIV GGNNCC 2 cut(s) 89, 183
NmeAIII GCCGAG 2 cut(s) 316, 328
NspI RCATGY 1 cut(s) 470
PcsI WCGNNNNNNNCGW 1 cut(s) 270
PctI GAATGC 2 cut(s) 340, 382
PdiI GCCGGC 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 437, 497
PfoI TCCNGGA 1 cut(s) 318
PkrI GCNGC 2 cut(s) 96, 128
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
Psp124BI GAGCTC 1 cut(s) 318
Psp1406I AACGTT 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 318
PspFI CCCAGC 1 cut(s) 431
PspGI CCWGG 1 cut(s) 318
PspN4I GGNNCC 2 cut(s) 89, 183
RsaI GTAC 3 cut(s) 158, 167, 205
RsaNI GTAC 3 cut(s) 157, 166, 204
SacI GAGCTC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 562
SatI GCNGC 2 cut(s) 95, 127
Sau3AI GATC 4 cut(s) 6, 105, 138, 270
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 320
SduI GDGCHC 1 cut(s) 318
SetI ASST 6 cut(s) 78, 202, 297, 318, 373, 385
SgrAI CRCCGGYG 2 cut(s) 50, 110
Sse9I AATT 1 cut(s) 559
SsiI CCGC 3 cut(s) 95, 268, 288
SspMI CTAG 2 cut(s) 458, 480
SstI GAGCTC 1 cut(s) 318
StyD4I CCNGG 1 cut(s) 318
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 1 cut(s) 202
TaqI TCGA 2 cut(s) 141, 389
TasI AATT 1 cut(s) 559
TatI WGTACW 1 cut(s) 165
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 2 cut(s) 437, 497
Tru1I TTAA 1 cut(s) 562
Tru9I TTAA 1 cut(s) 562
TseI GCWGC 1 cut(s) 126
TspDTI ATGAA 3 cut(s) 389, 407, 534
TspGWI ACGGA 1 cut(s) 194
XceI RCATGY 1 cut(s) 470
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 2 cut(s) 458, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.