FvH4_6g46551

protein C9orf85 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006795
Physical Location & Seq
Reverse (-)
35484413 .. 35485635
1223 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46551.t2

Sequence Viewer

Length: 594 bp
ATGATGATCAACGGTAGGCACAGGAACAAGTACGCCTGGAAACCCAACGCCGGCGTCAAAGTCAACGAAACGGAGGTCGGAGGCCGGTTCCGGCCGCTGTCGGAGATAACCGGCGTCTGCCAACGCTGCAAGGAACAGATCGAGTGGAAACGCAAGTACGGCAAGTACAAGACCCTAACGGAACCGACCAAGTGCCAACGTTGTACCAAGCGCAACGTCCGACAGTCCCACCACAAGCTCTGCCAGCCTTGCGCCAAGGAACACGGCGTCTGCGCCAAGTGCTGTTCTCGTAACGAACGGATTGTCGGGAAAGACCCTGCCGAGGTTGAAGCCGAACAGAAGGAGCTACAAGAGGCGATTAAAAATGCGAGAGAAAGAGATAGGAGGACTTTATTACGAGCTATGAATGCAGGTAAGGCGATGAAGGGTGCAACTGAGAAAGAAGAGAAGGAAGACAAGGCTGGGGATTCGGCGCTCTCTGCTTCACTAGAGGAACATGCAGCTAGAGATGATGATGGTGATTCAGATGGTGATGATGATGATGATGAAGAAGAAGTAGAAGAAGATGAGGAGGAGGAGGGTGTTCGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2039

Protein Analysis

198

Amino Acids

22.44

Weight (kDa)

5.72

Isoelectric Point (pI)

52.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2039 PF10217 6 - 96 1.8e-27 Uncharacterized conserved protein (DUF2039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 401
AciI CCGC 1 cut(s) 95
AclI AACGTT 1 cut(s) 199
AcoI YGGCCR 1 cut(s) 92
AcyI GRCGYC 3 cut(s) 54, 114, 267
AfaI GTAC 4 cut(s) 32, 158, 167, 205
AfiI CCNNNNNNNGG 2 cut(s) 50, 322
AgsI TTSAA 1 cut(s) 329
AjnI CCWGG 1 cut(s) 35
AluBI AGCT 4 cut(s) 238, 346, 401, 503
AluI AGCT 4 cut(s) 238, 346, 401, 503
AoxI GGCC 2 cut(s) 82, 92
ApeKI GCWGC 2 cut(s) 126, 500
ArsI GACNNNNNNTTYG 4 cut(s) 60, 92, 288, 320
AspLEI GCGC 4 cut(s) 213, 254, 275, 475
AsuHPI GGTGA 2 cut(s) 530, 542
BbsI GAAGAC 1 cut(s) 459
BbvI GCAGC 2 cut(s) 113, 512
BccI CCATC 2 cut(s) 509, 521
BceAI ACGGC 2 cut(s) 175, 280
BciT130I CCWGG 1 cut(s) 37
BclI TGATCA 1 cut(s) 6
BfaI CTAG 2 cut(s) 488, 504
BfoI RGCGCY 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 401
BisI GCNGC 3 cut(s) 95, 127, 501
BlsI GCNGC 3 cut(s) 96, 128, 502
Bme1390I CCNGG 1 cut(s) 37
BmiI GGNNCC 2 cut(s) 89, 183
BmrFI CCNGG 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 459
BsaHI GRCGYC 3 cut(s) 54, 114, 267
BsaJI CCNNGG 2 cut(s) 255, 321
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 322
Bse118I RCCGGY 3 cut(s) 50, 84, 110
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 2 cut(s) 255, 321
BseLI CCNNNNNNNGG 2 cut(s) 50, 322
BseMII CTCAG 1 cut(s) 426
BseRI GAGGAG 3 cut(s) 584, 587, 590
BseX3I CGGCCG 1 cut(s) 92
BseXI GCAGC 2 cut(s) 113, 512
BseYI CCCAGC 1 cut(s) 461
Bsh1285I CGRYCG 1 cut(s) 95
BshFI GGCC 2 cut(s) 84, 94
BsiEI CGRYCG 1 cut(s) 95
BsiSI CCGG 4 cut(s) 51, 85, 91, 111
BslFI GGGAC 1 cut(s) 211
BslI CCNNNNNNNGG 2 cut(s) 50, 322
BsmFI GGGAC 1 cut(s) 211
BsmI GAATGC 1 cut(s) 412
BsnI GGCC 2 cut(s) 84, 94
Bsp143I GATC 2 cut(s) 6, 138
BspACI CCGC 1 cut(s) 95
BspANI GGCC 2 cut(s) 84, 94
BspCNI CTCAG 1 cut(s) 427
BspLI GGNNCC 2 cut(s) 89, 183
BspMI ACCTGC 1 cut(s) 401
BsrFI RCCGGY 3 cut(s) 50, 84, 110
BssAI RCCGGY 3 cut(s) 50, 84, 110
BssECI CCNNGG 2 cut(s) 255, 321
BssMI GATC 2 cut(s) 6, 138
BssNI GRCGYC 3 cut(s) 54, 114, 267
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 37
Bst4CI ACNGT 2 cut(s) 14, 225
Bst6I CTCTTC 1 cut(s) 438
BstACI GRCGYC 3 cut(s) 54, 114, 267
BstC8I GCNNGC 2 cut(s) 52, 245
BstDEI CTNAG 1 cut(s) 435
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 4 cut(s) 213, 254, 275, 475
BstKTI GATC 2 cut(s) 9, 141
BstMBI GATC 2 cut(s) 6, 138
BstMCI CGRYCG 1 cut(s) 95
BstMWI GCNNNNNNNGC 8 cut(s) 126, 159, 244, 249, 279, 407, 416, 479
BstNI CCWGG 1 cut(s) 37
BstNSI RCATGY 1 cut(s) 500
BstSCI CCNGG 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 113, 512
BstV2I GAAGAC 1 cut(s) 459
BstZI CGGCCG 1 cut(s) 92
BsuRI GGCC 2 cut(s) 84, 94
BtgZI GCGATG 1 cut(s) 434
BveI ACCTGC 1 cut(s) 401
Cac8I GCNNGC 2 cut(s) 52, 245
CfoI GCGC 4 cut(s) 213, 254, 275, 475
Cfr10I RCCGGY 3 cut(s) 50, 84, 110
CseI GACGC 3 cut(s) 43, 103, 256
Csp6I GTAC 4 cut(s) 31, 157, 166, 204
CviAII CATG 1 cut(s) 497
CviJI RGCY 9 cut(s) 84, 94, 238, 247, 332, 346, 401, 461, 503
CviKI_1 RGCY 9 cut(s) 84, 94, 238, 247, 332, 346, 401, 461, 503
CviQI GTAC 4 cut(s) 31, 157, 166, 204
DdeI CTNAG 1 cut(s) 435
DpnI GATC 2 cut(s) 8, 140
DpnII GATC 2 cut(s) 6, 138
EaeI YGGCCR 1 cut(s) 92
EagI CGGCCG 1 cut(s) 92
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
EclXI CGGCCG 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 255
Eco52I CGGCCG 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 1 cut(s) 500
FaiI YATR 2 cut(s) 404, 498
FaqI GGGAC 1 cut(s) 211
FatI CATG 1 cut(s) 496
FbaI TGATCA 1 cut(s) 6
Fnu4HI GCNGC 3 cut(s) 95, 127, 501
Fsp4HI GCNGC 3 cut(s) 95, 127, 501
FspBI CTAG 2 cut(s) 488, 504
GlaI GCGC 4 cut(s) 212, 253, 274, 474
GluI GCNGC 3 cut(s) 95, 127, 501
GsaI CCCAGC 1 cut(s) 465
HaeII RGCGCY 1 cut(s) 476
HaeIII GGCC 2 cut(s) 84, 94
HapII CCGG 4 cut(s) 51, 85, 91, 111
HgaI GACGC 3 cut(s) 43, 103, 256
HhaI GCGC 4 cut(s) 213, 254, 275, 475
Hin1I GRCGYC 3 cut(s) 54, 114, 267
Hin1II CATG 1 cut(s) 500
Hin6I GCGC 4 cut(s) 211, 252, 273, 473
HinP1I GCGC 4 cut(s) 211, 252, 273, 473
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 2 cut(s) 467, 521
HpaII CCGG 4 cut(s) 51, 85, 91, 111
HphI GGTGA 2 cut(s) 530, 542
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 4 cut(s) 80, 103, 221, 526
Hpy188III TCNNGA 1 cut(s) 307
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 3 cut(s) 334, 418, 442
HpyCH4III ACNGT 2 cut(s) 14, 225
HpyCH4IV ACGT 2 cut(s) 199, 216
HpyCH4V TGCA 4 cut(s) 129, 410, 431, 500
HpyF10VI GCNNNNNNNGC 8 cut(s) 126, 159, 244, 249, 279, 407, 416, 479
HpyF3I CTNAG 1 cut(s) 435
HpySE526I ACGT 2 cut(s) 199, 216
Hsp92I GRCGYC 3 cut(s) 54, 114, 267
Hsp92II CATG 1 cut(s) 500
HspAI GCGC 4 cut(s) 211, 252, 273, 473
KroI GCCGGC 1 cut(s) 50
KroNI GCCGGC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 2 cut(s) 6, 138
LmnI GCTCC 1 cut(s) 343
Lsp1109I GCAGC 2 cut(s) 113, 512
MaeI CTAG 2 cut(s) 488, 504
MaeII ACGT 2 cut(s) 199, 216
MaeIII GTNAC 1 cut(s) 290
MalI GATC 2 cut(s) 8, 140
MboI GATC 2 cut(s) 6, 138
MboII GAAGA 6 cut(s) 455, 464, 560, 563, 572, 575
MluCI AATT 1 cut(s) 589
MmeI TCCRAC 3 cut(s) 58, 81, 244
MreI CGCCGGCG 1 cut(s) 50
MroNI GCCGGC 1 cut(s) 50
MseI TTAA 2 cut(s) 360, 592
MspA1I CMGCKG 1 cut(s) 97
MspI CCGG 4 cut(s) 51, 85, 91, 111
MspR9I CCNGG 1 cut(s) 37
Mva1269I GAATGC 1 cut(s) 412
MvaI CCWGG 1 cut(s) 37
MwoI GCNNNNNNNGC 8 cut(s) 126, 159, 244, 249, 279, 407, 416, 479
NaeI GCCGGC 1 cut(s) 52
NdeII GATC 2 cut(s) 6, 138
NgoMIV GCCGGC 1 cut(s) 50
NlaIII CATG 1 cut(s) 500
NlaIV GGNNCC 2 cut(s) 89, 183
NmeAIII GCCGAG 1 cut(s) 346
NspI RCATGY 1 cut(s) 500
PctI GAATGC 1 cut(s) 412
PdiI GCCGGC 1 cut(s) 52
PfeI GAWTC 2 cut(s) 467, 521
PkrI GCNGC 3 cut(s) 96, 128, 502
Psp1406I AACGTT 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 461
PspGI CCWGG 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 89, 183
RsaI GTAC 4 cut(s) 32, 158, 167, 205
RsaNI GTAC 4 cut(s) 31, 157, 166, 204
SaqAI TTAA 2 cut(s) 360, 592
SatI GCNGC 3 cut(s) 95, 127, 501
Sau3AI GATC 2 cut(s) 6, 138
ScrFI CCNGG 1 cut(s) 37
SetI ASST 9 cut(s) 78, 202, 219, 240, 327, 348, 403, 415, 505
SgrAI CRCCGGYG 1 cut(s) 50
Sse9I AATT 1 cut(s) 589
SsiI CCGC 1 cut(s) 95
SspMI CTAG 2 cut(s) 488, 504
StyD4I CCNGG 1 cut(s) 35
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 2 cut(s) 14, 225
TaiI ACGT 2 cut(s) 202, 219
TaqI TCGA 1 cut(s) 141
TasI AATT 1 cut(s) 589
TatI WGTACW 1 cut(s) 165
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 2 cut(s) 467, 521
Tru1I TTAA 2 cut(s) 360, 592
Tru9I TTAA 2 cut(s) 360, 592
TseI GCWGC 2 cut(s) 126, 500
TspDTI ATGAA 3 cut(s) 419, 437, 561
TspGWI ACGGA 3 cut(s) 86, 194, 313
XceI RCATGY 1 cut(s) 500
XspI CTAG 2 cut(s) 488, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.