Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006795

Physical Location & Seq

Genomic Coordinates Reverse (-)

64415657 .. 64420481

Gene Structure 4825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0513100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

ATGAGCATTGTGCCCAAAGAGAACATTGAAGTAATCTCACAGAGCATTGGGATCAACAATTTGTCTCCAGATGTCGCTCTCGCTCTCGCCCCTGACGTCGAATATCGCCTCCGTGAGATCATGCAGGAGGCTATCAAATGTATGCGTCACTCGAGGAGAACTAAATTGACAGCTGATGATGTCGATGGTGCACTCAATTTAAGAAATGTCGAGCCACTATATGGTTTTGTGTCTGGAGGCCCCTTGCGTTTCAAAAAAGCAGTTGGACATAGGGATTTGTTTTACATTGATGACAAGGATGTGGATTTCAAAGATGTGATCGAAGCTCCTTTACCAAAAGCCCCACTTGATACTGGACTTGTTTGTCACTGGCTAGCAATAGAAGGTGTTCAACCTGCAATTCCGGAAAATGCACCTGTAGAAGTACTTGCAGCTCCTTCTGATGGTAAAAAGTATGAGCCAAAGGGTGATGGACTTCCTGTTGAGCTTAAATTACCAGTTAAGCATGTATTATCTAGAGAGCTTCAGCTATATTTTGACAAAATCACTGAGCTTGTCGTGAGTAGGTCTGATGTTATTCTTCTTAAAAAAGCACTATTGAGCTTGGCTACTGATTCAGGGCTTCATCCATTAGTTCCTTATTTCACATGCTTTATAGCTGATGAGGTTTCTCGTGGTTTGAGTGATTACCCACTTCTGTTTGCTCTGATGCGAGTTGTTCATAGCCTTCTCCAGAATCCTCACATACACATTGAACCATATTTACACCAATTGATGCCATCTGTAGTTACTTGCCTTGTTGCAAAAAGATTGGGCAATAGGTTTGCTGACAACCATTGGAAACTTAGAGACTTCACAGCGAATCTCGTTGCTTCAATTTGTAAAAGGTTTGGGCATATCTATAACACTCTCCAGTCACGACTTACAAAAACTTTGGTCAATGCATTTTTGGACCCAAAACGGACCTTGACTCAACACTATGGTGCAATTCAAGGTTTAGCTGCTCTAGGGCCAGTGTGTTCAATATTGTGCAACGAAGATCTTTGCAAGAAGTGGAGATCAATTATGTGGATTTGCCTTCTGATACTGCCAAATCTGGAGTCATATCTGCGACTTCTTGAATCAGATCTTCTTCTTGAGAAGCAAAAGAATGAGATGAAGAGGCATGAAGCTTGGCGTTTTTATGGAGCCTTGTTGAGTTATGATAGGCTGAAGATCTTCCAAACGTTGCCATCTTCTGTACCACAATCTCTCTGGAAGACCAATGAAAGACTTGTTCTCACTAAGCCAAAAACAGCAGGTCCAGCTTCCTCAGGTGATACCAATATAGGCCCCTCATCATCATCTAGAAGTTTGTCTAATGAGAGCATTTCAAACAGCAGAGGTAGAAAAGACGGGGCTGATGCTCAGTCTCTAAAGAAATCAGCTGTCCTCAATCAGGTCTGGAAGGACGAATTGAATTCTGGGAAACTACTCGTATCATTGTTTCAGTTGTTTGGTGAAGACATTCTCCCCTTCATTCCAGCTCGGGAGATGTCTTTGTTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2039

Protein Analysis

516

Amino Acids

57.82

Weight (kDa)

8.67

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAF	PF02969	1 - 65	2.7e-29	TATA box binding protein associated factor (TAF)
TAF6_C	PF07571	167 - 338	1.9e-68	TAF6 C-terminal HEAT repeat domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02220
fragaria_vesca	FvH4_6g46551 FvH4_6g46551
malus_domestica	MD09G1072600.v1.1 MD17G1063100.v1.1 MD17G1063300.v1.1 MD17G1063700.v1.1
prunus_persica	Prupe.3G250800_v2.0.a1
pyrus_communis	pycom12433g00050 pycom17g06220 pycom17g06290 pycom17g06410
rosa_chinensis	RchiOBHm_Chr2g0165201
rosa_laevigata	RLG00000021516
rosa_multiflora	Rmu_sc0001097.1_g000046 Rmu_sc0012583.1_g000002
rosa_roxburghii	Rroxscaffold_2G00085940
rosa_rugosa	Rorug02G0513100 Rorug02G0513200 Rorug02G0513300
rosa_samantha	Rh2AG581400 Rh2BG592700 Rh2CG563400 Rh2DG602700
rosa_wichuraiana	Rw0G008400 Rw2G048290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	363
AatII	GACGTC	1 cut(s)	99
Acc36I	ACCTGC	2 cut(s)	403, 1289
AccB7I	CCANNNNNTGG	1 cut(s)	221
AccIII	TCCGGA	1 cut(s)	403
AclI	AACGTT	1 cut(s)	1226
AclWI	GGATC	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	1459
AcuI	CTGAAG	2 cut(s)	509, 1232
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	2 cut(s)	426, 1242
AfiI	CCNNNNNNNGG	3 cut(s)	221, 443, 1438
AleI	CACNNNNGTG	1 cut(s)	981
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	3 cut(s)	69, 843, 1416
Alw44I	GTGCAC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	59
Ama87I	CYCGRG	2 cut(s)	151, 1527
Aor13HI	TCCGGA	1 cut(s)	403
AoxI	GGCC	3 cut(s)	238, 1010, 1330
ApaLI	GTGCAC	1 cut(s)	189
ApeKI	GCWGC	2 cut(s)	431, 1001
ApoI	RAATTY	1 cut(s)	1459
ArsI	GACNNNNNNTTYG	2 cut(s)	1085, 1117
Asp700I	GAANNNNTTC	3 cut(s)	387, 1217, 1506
AspS9I	GGNCC	6 cut(s)	239, 952, 963, 1010, 1301, 1331
AsuHPI	GGTGA	3 cut(s)	479, 1328, 1511
AsuNHI	GCTAGC	1 cut(s)	373
AvaI	CYCGRG	2 cut(s)	151, 1527
AvaII	GGWCC	3 cut(s)	952, 963, 1301
AxyI	CCTNAGG	1 cut(s)	1312
BaeGI	GKGCMC	2 cut(s)	15, 193
BarI	GAAGNNNNNNTAC	2 cut(s)	315, 347
BauI	CACGAG	1 cut(s)	672
BbsI	GAAGAC	2 cut(s)	1265, 1509
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	443, 988
BccI	CCATC	5 cut(s)	179, 437, 464, 787, 1240
BcoDI	GTCTC	3 cut(s)	69, 843, 1416
BfaI	CTAG	4 cut(s)	374, 516, 1007, 1347
BfmI	CTRYAG	2 cut(s)	417, 783
BfuAI	ACCTGC	2 cut(s)	403, 1289
BglII	AGATCT	3 cut(s)	1039, 1126, 1215
BisI	GCNGC	2 cut(s)	432, 1002
BlsI	GCNGC	2 cut(s)	433, 1003
BmcAI	AGTACT	1 cut(s)	426
Bme18I	GGWCC	3 cut(s)	952, 963, 1301
BmeT110I	CYCGRG	2 cut(s)	151, 1527
BmgT120I	GGNCC	6 cut(s)	239, 952, 963, 1010, 1301, 1331
BmiI	GGNNCC	4 cut(s)	241, 954, 1189, 1333
BmsI	GCATC	3 cut(s)	699, 765, 1393
BmtI	GCTAGC	1 cut(s)	377
BpiI	GAAGAC	2 cut(s)	1265, 1509
BpmI	CTGGAG	5 cut(s)	51, 255, 716, 896, 1118
BpuEI	CTTGAG	1 cut(s)	1157
BsaHI	GRCGYC	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 443, 1438
Bse1I	ACTGG	5 cut(s)	358, 374, 497, 913, 1013
Bse21I	CCTNAGG	1 cut(s)	1312
BseAI	TCCGGA	1 cut(s)	403
BseGI	GGATG	2 cut(s)	304, 625
BseLI	CCNNNNNNNGG	3 cut(s)	221, 443, 1438
BseMII	CTCAG	3 cut(s)	540, 1326, 1421
BseNI	ACTGG	5 cut(s)	358, 374, 497, 913, 1013
BseRI	GAGGAG	1 cut(s)	169
BseSI	GKGCMC	2 cut(s)	15, 193
BseXI	GCAGC	2 cut(s)	443, 988
BshFI	GGCC	3 cut(s)	240, 1012, 1332
BsiHKAI	GWGCWC	1 cut(s)	193
BsiHKCI	CYCGRG	2 cut(s)	151, 1527
BsiSI	CCGG	1 cut(s)	404
BslI	CCNNNNNNNGG	3 cut(s)	221, 443, 1438
BsmAI	GTCTC	3 cut(s)	69, 843, 1416
BsnI	GGCC	3 cut(s)	240, 1012, 1332
BsoBI	CYCGRG	2 cut(s)	151, 1527
Bsp1286I	GDGCHC	2 cut(s)	15, 193
Bsp13I	TCCGGA	1 cut(s)	403
Bsp143I	GATC	7 cut(s)	51, 117, 318, 1039, 1058, 1126, 1215
BspANI	GGCC	3 cut(s)	240, 1012, 1332
BspCNI	CTCAG	3 cut(s)	541, 1325, 1420
BspEI	TCCGGA	1 cut(s)	403
BspLI	GGNNCC	4 cut(s)	241, 954, 1189, 1333
BspMI	ACCTGC	2 cut(s)	403, 1289
BspOI	GCTAGC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	59
BsrI	ACTGG	5 cut(s)	358, 374, 497, 913, 1013
BssMI	GATC	7 cut(s)	51, 117, 318, 1039, 1058, 1126, 1215
BssNI	GRCGYC	1 cut(s)	96
BssSI	CACGAG	1 cut(s)	672
Bst2BI	CACGAG	1 cut(s)	672
Bst6I	CTCTTC	1 cut(s)	1154
BstACI	GRCGYC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	5 cut(s)	549, 845, 1284, 1312, 1407
BstENI	CCTNNNNNAGG	1 cut(s)	1436
BstF5I	GGATG	2 cut(s)	304, 625
BstKTI	GATC	7 cut(s)	54, 120, 321, 1042, 1061, 1129, 1218
BstMAI	GTCTC	3 cut(s)	69, 843, 1416
BstMBI	GATC	7 cut(s)	51, 117, 318, 1039, 1058, 1126, 1215
BstMWI	GCNNNNNNNGC	1 cut(s)	1304
BstNSI	RCATGY	2 cut(s)	509, 651
BstSFI	CTRYAG	2 cut(s)	417, 783
BstSLI	GKGCMC	2 cut(s)	15, 193
BstV1I	GCAGC	2 cut(s)	443, 988
BstV2I	GAAGAC	2 cut(s)	1265, 1509
BstX2I	RGATCY	3 cut(s)	1039, 1126, 1215
BstYI	RGATCY	3 cut(s)	1039, 1126, 1215
Bsu36I	CCTNAGG	1 cut(s)	1312
BsuRI	GGCC	3 cut(s)	240, 1012, 1332
BtsCI	GGATG	2 cut(s)	304, 625
BtsIMutI	CAGTG	3 cut(s)	367, 546, 1020
BveI	ACCTGC	2 cut(s)	403, 1289
Cac8I	GCNNGC	1 cut(s)	375
Cfr13I	GGNCC	6 cut(s)	239, 952, 963, 1010, 1301, 1331
CseI	GACGC	1 cut(s)	134
Csp6I	GTAC	2 cut(s)	425, 1241
CviAII	CATG	4 cut(s)	121, 506, 648, 1166
CviQI	GTAC	2 cut(s)	425, 1241
DdeI	CTNAG	5 cut(s)	549, 845, 1284, 1312, 1407
DpnI	GATC	7 cut(s)	53, 119, 320, 1041, 1060, 1128, 1217
DpnII	GATC	7 cut(s)	51, 117, 318, 1039, 1058, 1126, 1215
DrdI	GACNNNNNNGTC	1 cut(s)	363
DseDI	GACNNNNNNGTC	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	1154
EarI	CTCTTC	1 cut(s)	1154
Eco47I	GGWCC	3 cut(s)	952, 963, 1301
Eco57I	CTGAAG	2 cut(s)	509, 1232
Eco81I	CCTNAGG	1 cut(s)	1312
Eco88I	CYCGRG	2 cut(s)	151, 1527
EcoNI	CCTNNNNNAGG	1 cut(s)	1436
EcoO109I	RGGNCCY	2 cut(s)	239, 1331
EcoRI	GAATTC	1 cut(s)	1459
EcoT22I	ATGCAT	1 cut(s)	946
FaeI	CATG	4 cut(s)	124, 509, 651, 1169
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FatI	CATG	4 cut(s)	120, 505, 647, 1165
Fnu4HI	GCNGC	2 cut(s)	432, 1002
FokI	GGATG	2 cut(s)	311, 612
Fsp4HI	GCNGC	2 cut(s)	432, 1002
FspBI	CTAG	4 cut(s)	374, 516, 1007, 1347
GluI	GCNGC	2 cut(s)	432, 1002
GsuI	CTGGAG	5 cut(s)	51, 255, 716, 896, 1118
HaeIII	GGCC	3 cut(s)	240, 1012, 1332
HapII	CCGG	1 cut(s)	404
HgaI	GACGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	4 cut(s)	124, 509, 651, 1169
HindIII	AAGCTT	1 cut(s)	1170
HinfI	GANTC	6 cut(s)	614, 736, 862, 970, 1100, 1121
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	3 cut(s)	479, 1328, 1511
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	5 cut(s)	442, 571, 708, 1083, 1126
Hpy8I	GTNNAC	1 cut(s)	191
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	6 cut(s)	377, 447, 737, 1088, 1441, 1525
HpyCH4IV	ACGT	2 cut(s)	96, 1226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1304
HpyF3I	CTNAG	5 cut(s)	549, 845, 1284, 1312, 1407
HpySE526I	ACGT	2 cut(s)	96, 1226
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	4 cut(s)	124, 509, 651, 1169
Kpn2I	TCCGGA	1 cut(s)	403
Kzo9I	GATC	7 cut(s)	51, 117, 318, 1039, 1058, 1126, 1215
LmnI	GCTCC	3 cut(s)	331, 439, 1187
Lsp1109I	GCAGC	2 cut(s)	443, 988
LweI	GCATC	3 cut(s)	699, 765, 1393
MaeI	CTAG	4 cut(s)	374, 516, 1007, 1347
MaeII	ACGT	2 cut(s)	96, 1226
MaeIII	GTNAC	4 cut(s)	146, 365, 787, 915
MalI	GATC	7 cut(s)	53, 119, 320, 1041, 1060, 1128, 1217
MboI	GATC	7 cut(s)	51, 117, 318, 1039, 1058, 1126, 1215
MfeI	CAATTG	1 cut(s)	770
MflI	RGATCY	3 cut(s)	1039, 1126, 1215
MhlI	GDGCHC	2 cut(s)	15, 193
MlyI	GAGTC	2 cut(s)	964, 1109
MmeI	TCCRAC	1 cut(s)	244
Mph1103I	ATGCAT	1 cut(s)	946
MroI	TCCGGA	1 cut(s)	403
MroXI	GAANNNNTTC	3 cut(s)	387, 1217, 1506
MseI	TTAA	4 cut(s)	200, 489, 501, 585
MslI	CAYNNNNRTG	1 cut(s)	981
MspA1I	CMGCKG	2 cut(s)	173, 1427
MspI	CCGG	1 cut(s)	404
MunI	CAATTG	1 cut(s)	770
MwoI	GCNNNNNNNGC	1 cut(s)	1304
NdeII	GATC	7 cut(s)	51, 117, 318, 1039, 1058, 1126, 1215
NheI	GCTAGC	1 cut(s)	373
NlaIII	CATG	4 cut(s)	124, 509, 651, 1169
NlaIV	GGNNCC	4 cut(s)	241, 954, 1189, 1333
NmuCI	GTSAC	3 cut(s)	146, 365, 915
NsiI	ATGCAT	1 cut(s)	946
NspI	RCATGY	2 cut(s)	509, 651
OliI	CACNNNNGTG	1 cut(s)	981
PaeR7I	CTCGAG	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PdmI	GAANNNNTTC	3 cut(s)	387, 1217, 1506
PfeI	GAWTC	4 cut(s)	614, 736, 862, 1121
PflMI	CCANNNNNTGG	1 cut(s)	221
PkrI	GCNGC	2 cut(s)	433, 1003
PleI	GAGTC	2 cut(s)	964, 1108
PpsI	GAGTC	2 cut(s)	964, 1108
Psp1406I	AACGTT	1 cut(s)	1226
PspN4I	GGNNCC	4 cut(s)	241, 954, 1189, 1333
PspPI	GGNCC	6 cut(s)	239, 952, 963, 1010, 1301, 1331
PspXI	VCTCGAGB	1 cut(s)	151
PsrI	GAACNNNNNNTAC	2 cut(s)	747, 779
PsuI	RGATCY	3 cut(s)	1039, 1126, 1215
PvuII	CAGCTG	2 cut(s)	173, 1427
RsaI	GTAC	2 cut(s)	426, 1242
RsaNI	GTAC	2 cut(s)	425, 1241
RseI	CAYNNNNRTG	1 cut(s)	981
SaqAI	TTAA	4 cut(s)	200, 489, 501, 585
SatI	GCNGC	2 cut(s)	432, 1002
Sau3AI	GATC	7 cut(s)	51, 117, 318, 1039, 1058, 1126, 1215
Sau96I	GGNCC	6 cut(s)	239, 952, 963, 1010, 1301, 1331
ScaI	AGTACT	1 cut(s)	426
SchI	GAGTC	2 cut(s)	964, 1109
SduI	GDGCHC	2 cut(s)	15, 193
SfaNI	GCATC	3 cut(s)	699, 765, 1393
SfcI	CTRYAG	2 cut(s)	417, 783
Sfr274I	CTCGAG	1 cut(s)	151
SinI	GGWCC	3 cut(s)	952, 963, 1301
SlaI	CTCGAG	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	981
SmlI	CTYRAG	2 cut(s)	151, 1136
SmoI	CTYRAG	2 cut(s)	151, 1136
SspI	AATATT	1 cut(s)	1026
SspMI	CTAG	4 cut(s)	374, 516, 1007, 1347
TaiI	ACGT	2 cut(s)	99, 1229
TaqI	TCGA	5 cut(s)	99, 152, 183, 210, 321
TatI	WGTACW	1 cut(s)	424
TfiI	GAWTC	4 cut(s)	614, 736, 862, 1121
Tru1I	TTAA	4 cut(s)	200, 489, 501, 585
Tru9I	TTAA	4 cut(s)	200, 489, 501, 585
TscAI	CASTG	3 cut(s)	374, 553, 1020
TseFI	GTSAC	3 cut(s)	146, 365, 915
TseI	GCWGC	2 cut(s)	431, 1001
Tsp45I	GTSAC	3 cut(s)	146, 365, 915
TspDTI	ATGAA	6 cut(s)	614, 710, 1172, 1182, 1281, 1507
TspGWI	ACGGA	2 cut(s)	101, 976
TspRI	CASTG	3 cut(s)	374, 553, 1020
Van91I	CCANNNNNTGG	1 cut(s)	221
VneI	GTGCAC	1 cut(s)	189
VpaK11BI	GGWCC	3 cut(s)	952, 963, 1301
XagI	CCTNNNNNAGG	1 cut(s)	1436
XapI	RAATTY	1 cut(s)	1459
XbaI	TCTAGA	2 cut(s)	515, 1346
XceI	RCATGY	2 cut(s)	509, 651
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1251
XhoI	CTCGAG	1 cut(s)	151
XmnI	GAANNNNTTC	3 cut(s)	387, 1217, 1506
XspI	CTAG	4 cut(s)	374, 516, 1007, 1347
ZraI	GACGTC	1 cut(s)	97
ZrmI	AGTACT	1 cut(s)	426
Zsp2I	ATGCAT	1 cut(s)	946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.