Rh2AG581400

protein C9orf85 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006795
Physical Location & Seq
Reverse (-)
81074320 .. 81075569
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG581400.1

Sequence Viewer

Length: 369 bp
ATGATCAACGGTAGGCACAAGAACAAGTTCGCTTGGAAACCCAACGCCGGCGTCAAAATCAACGAAACCGAGGTCGGAGGCCGGTTCCGGCCGCTGTCGGAGATCACCGGCGTCTGCCAACGCTGCAAGGAACAGATCGAGTGGAAGCGCAAGTACGGCAAGTACAAGCCCCTAACGGAACCGACCAAGTGCCAACGTTGTACCAAACGCGCCGTCCGCCAGTCCCACCACAAGCTCTGTCAGCCTTGCGCCAAGGAACACGGCGTCTGCGCCAAGTGTTGTTGTCGCAACGAGCGGATCGTCGGGAAAGACCCCGCCGAGGTTGAAGCCGAGCAGAAGGAGCTCCAGGAGGTTTTGTTTCGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2039

Protein Analysis

122

Amino Acids

14.19

Weight (kDa)

9.5

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2039 PF10217 5 - 95 4e-28 Uncharacterized conserved protein (DUF2039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 295
AccII CGCG 1 cut(s) 210
AciI CCGC 4 cut(s) 92, 217, 295, 315
AclI AACGTT 1 cut(s) 196
AclWI GGATC 1 cut(s) 305
AcoI YGGCCR 1 cut(s) 89
AcyI GRCGYC 3 cut(s) 51, 111, 264
AfaI GTAC 3 cut(s) 155, 164, 202
AfiI CCNNNNNNNGG 2 cut(s) 47, 319
AgsI TTSAA 1 cut(s) 326
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 2 cut(s) 235, 343
AluI AGCT 2 cut(s) 235, 343
Alw21I GWGCWC 1 cut(s) 345
AlwI GGATC 1 cut(s) 305
AoxI GGCC 2 cut(s) 79, 89
ApeKI GCWGC 1 cut(s) 123
ArsI GACNNNNNNTTYG 4 cut(s) 57, 89, 198, 230
Asp700I GAANNNNTTC 1 cut(s) 26
AspLEI GCGC 4 cut(s) 150, 212, 251, 272
AsuHPI GGTGA 1 cut(s) 97
BanII GRGCYC 1 cut(s) 345
BarI GAAGNNNNNNTAC 2 cut(s) 137, 169
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 110
BceAI ACGGC 3 cut(s) 172, 197, 277
BciT130I CCWGG 1 cut(s) 347
BclI TGATCA 1 cut(s) 3
BisI GCNGC 2 cut(s) 92, 124
BlsI GCNGC 2 cut(s) 93, 125
Bme1390I CCNGG 1 cut(s) 347
BmiI GGNNCC 2 cut(s) 86, 180
BmrFI CCNGG 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 329
BsaHI GRCGYC 3 cut(s) 51, 111, 264
BsaJI CCNNGG 3 cut(s) 69, 252, 318
BsaXI ACNNNNNCTCC 1 cut(s) 341
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 319
Bse118I RCCGGY 3 cut(s) 47, 81, 107
Bse1I ACTGG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 347
BseDI CCNNGG 3 cut(s) 69, 252, 318
BseLI CCNNNNNNNGG 2 cut(s) 47, 319
BseNI ACTGG 1 cut(s) 220
BseX3I CGGCCG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 110
Bsh1236I CGCG 1 cut(s) 210
Bsh1285I CGRYCG 1 cut(s) 92
BshFI GGCC 2 cut(s) 81, 91
BsiEI CGRYCG 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 4 cut(s) 48, 82, 88, 108
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 2 cut(s) 47, 319
BsmFI GGGAC 1 cut(s) 208
BsnI GGCC 2 cut(s) 81, 91
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 4 cut(s) 3, 102, 135, 297
BspACI CCGC 4 cut(s) 92, 217, 295, 315
BspANI GGCC 2 cut(s) 81, 91
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 86, 180
BspPI GGATC 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 295
BsrFI RCCGGY 3 cut(s) 47, 81, 107
BsrI ACTGG 1 cut(s) 220
BssAI RCCGGY 3 cut(s) 47, 81, 107
BssECI CCNNGG 3 cut(s) 69, 252, 318
BssMI GATC 4 cut(s) 3, 102, 135, 297
BssNI GRCGYC 3 cut(s) 51, 111, 264
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 1 cut(s) 11
BstACI GRCGYC 3 cut(s) 51, 111, 264
BstC8I GCNNGC 1 cut(s) 49
BstFNI CGCG 1 cut(s) 210
BstHHI GCGC 4 cut(s) 150, 212, 251, 272
BstKTI GATC 4 cut(s) 6, 105, 138, 300
BstMBI GATC 4 cut(s) 3, 102, 135, 297
BstMCI CGRYCG 1 cut(s) 92
BstMWI GCNNNNNNNGC 5 cut(s) 123, 156, 216, 241, 340
BstNI CCWGG 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 345
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 110
BstZI CGGCCG 1 cut(s) 89
BsuRI GGCC 2 cut(s) 81, 91
Cac8I GCNNGC 1 cut(s) 49
CfoI GCGC 4 cut(s) 150, 212, 251, 272
Cfr10I RCCGGY 3 cut(s) 47, 81, 107
CseI GACGC 3 cut(s) 40, 100, 253
Csp6I GTAC 3 cut(s) 154, 163, 201
CviJI RGCY 7 cut(s) 81, 91, 169, 235, 244, 329, 343
CviKI_1 RGCY 7 cut(s) 81, 91, 169, 235, 244, 329, 343
CviQI GTAC 3 cut(s) 154, 163, 201
DpnI GATC 4 cut(s) 5, 104, 137, 299
DpnII GATC 4 cut(s) 3, 102, 135, 297
EaeI YGGCCR 1 cut(s) 89
EagI CGGCCG 1 cut(s) 89
EciI GGCGGA 1 cut(s) 206
Ecl136II GAGCTC 1 cut(s) 343
EclXI CGGCCG 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 345
Eco52I CGGCCG 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 252
FaqI GGGAC 1 cut(s) 208
FauI CCCGC 1 cut(s) 322
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 92, 124
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 2 cut(s) 92, 124
GlaI GCGC 4 cut(s) 149, 211, 250, 271
GluI GCNGC 2 cut(s) 92, 124
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 2 cut(s) 81, 91
HapII CCGG 4 cut(s) 48, 82, 88, 108
HgaI GACGC 3 cut(s) 40, 100, 253
HhaI GCGC 4 cut(s) 150, 212, 251, 272
Hin1I GRCGYC 3 cut(s) 51, 111, 264
Hin6I GCGC 4 cut(s) 148, 210, 249, 270
HinP1I GCGC 4 cut(s) 148, 210, 249, 270
HinfI GANTC 1 cut(s) 363
HpaII CCGG 4 cut(s) 48, 82, 88, 108
HphI GGTGA 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 77, 100
Hpy188III TCNNGA 1 cut(s) 304
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 1 cut(s) 331
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 5 cut(s) 123, 156, 216, 241, 340
HpySE526I ACGT 1 cut(s) 196
Hsp92I GRCGYC 3 cut(s) 51, 111, 264
HspAI GCGC 4 cut(s) 148, 210, 249, 270
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 102, 135, 297
LmnI GCTCC 2 cut(s) 340, 348
LpnPI CCDG 7 cut(s) 61, 95, 101, 121, 233, 332, 359
Lsp1109I GCAGC 1 cut(s) 110
MaeII ACGT 1 cut(s) 196
MalI GATC 4 cut(s) 5, 104, 137, 299
MbiI CCGCTC 1 cut(s) 295
MboI GATC 4 cut(s) 3, 102, 135, 297
MhlI GDGCHC 1 cut(s) 345
MmeI TCCRAC 2 cut(s) 55, 78
MnlI CCTC 4 cut(s) 64, 71, 313, 343
MreI CGCCGGCG 1 cut(s) 47
MroNI GCCGGC 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 94
MspI CCGG 4 cut(s) 48, 82, 88, 108
MspR9I CCNGG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 347
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 5 cut(s) 123, 156, 216, 241, 340
NaeI GCCGGC 1 cut(s) 49
NdeII GATC 4 cut(s) 3, 102, 135, 297
NgoMIV GCCGGC 1 cut(s) 47
NlaIV GGNNCC 2 cut(s) 86, 180
NmeAIII GCCGAG 2 cut(s) 343, 355
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PdiI GCCGGC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 1 cut(s) 363
PfoI TCCNGGA 1 cut(s) 345
PkrI GCNGC 2 cut(s) 93, 125
Psp124BI GAGCTC 1 cut(s) 345
Psp1406I AACGTT 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 2 cut(s) 86, 180
RsaI GTAC 3 cut(s) 155, 164, 202
RsaNI GTAC 3 cut(s) 154, 163, 201
SacI GAGCTC 1 cut(s) 345
SatI GCNGC 2 cut(s) 92, 124
Sau3AI GATC 4 cut(s) 3, 102, 135, 297
ScrFI CCNGG 1 cut(s) 347
SduI GDGCHC 1 cut(s) 345
SetI ASST 6 cut(s) 75, 199, 237, 324, 345, 354
SgrAI CRCCGGYG 2 cut(s) 47, 107
SsiI CCGC 4 cut(s) 92, 217, 295, 315
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 199
TaqI TCGA 2 cut(s) 138, 361
TatI WGTACW 1 cut(s) 162
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 1 cut(s) 363
TseI GCWGC 1 cut(s) 123
TspGWI ACGGA 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.