Rh2CG563400

protein C9orf85 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006795
Physical Location & Seq
Reverse (-)
74149056 .. 74150416
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG563400.1

Sequence Viewer

Length: 513 bp
ATGATGATAAACGGAAGGCACAAGAACAAGTTCGCTTGGAAACCCAACGCCGGCGTCAAAATCAACGAAACCGAGGTCGGAGGCCGGTTCCGGCCGCTGTCGGAGATCACCGGCGTCTGCCAACGCTGCAAGGAACAGATCGAGTGGAAGCGCAAGTACGGCAAGTACAAGCCCCTAACGGAACCGACCAAGTGCCAACGTTGTACCAAACGCACCGTCCGCCAGTCCCACCACAAGCTCTGTCAGCCTTGCGCCAAGGAACACGGCGTCTGCGCCAAGTGTTGTTGTCGCAACGAGCGGATCGTCGGGAAAGACCCCGCCGAGGTTGAAGCCGAGCAGAAGGAGCTCCAGGAGGCTATCAAGAATGCAAGAGAGAGGGATAGGAGGACTCTGCTAAGAGCTGTATGTGCTTTGATATGTACACCCTGTTTGGTTTTCGAGGTTTTTCGTGTATGTGTAAGTTTTGATGGAATTGTGGATGTTGTGGTCTCAAATTTGTACTGCAACAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2039

Protein Analysis

170

Amino Acids

19.59

Weight (kDa)

9.35

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2039 PF10217 6 - 96 5.1e-28 Uncharacterized conserved protein (DUF2039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 298
AciI CCGC 4 cut(s) 95, 220, 298, 318
AclI AACGTT 1 cut(s) 199
AclWI GGATC 1 cut(s) 308
AcoI YGGCCR 1 cut(s) 92
AcsI RAATTY 1 cut(s) 493
AcyI GRCGYC 3 cut(s) 54, 114, 267
AfaI GTAC 5 cut(s) 158, 167, 205, 421, 500
AfiI CCNNNNNNNGG 2 cut(s) 50, 322
AgsI TTSAA 1 cut(s) 329
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 3 cut(s) 238, 346, 401
AluI AGCT 3 cut(s) 238, 346, 401
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 1 cut(s) 493
AlwI GGATC 1 cut(s) 308
AoxI GGCC 2 cut(s) 82, 92
ApeKI GCWGC 1 cut(s) 126
ApoI RAATTY 1 cut(s) 493
ArsI GACNNNNNNTTYG 4 cut(s) 60, 92, 201, 233
Asp700I GAANNNNTTC 1 cut(s) 29
AspLEI GCGC 3 cut(s) 153, 254, 275
AsuHPI GGTGA 1 cut(s) 100
BanII GRGCYC 1 cut(s) 348
BarI GAAGNNNNNNTAC 2 cut(s) 140, 172
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 113
BccI CCATC 1 cut(s) 461
BceAI ACGGC 2 cut(s) 175, 280
BciT130I CCWGG 1 cut(s) 350
BcoDI GTCTC 1 cut(s) 493
BisI GCNGC 2 cut(s) 95, 127
BlsI GCNGC 2 cut(s) 96, 128
Bme1390I CCNGG 1 cut(s) 350
BmiI GGNNCC 2 cut(s) 89, 183
BmrFI CCNGG 1 cut(s) 350
BpmI CTGGAG 1 cut(s) 332
BsaHI GRCGYC 3 cut(s) 54, 114, 267
BsaI GGTCTC 1 cut(s) 493
BsaJI CCNNGG 3 cut(s) 72, 255, 321
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 322
Bse118I RCCGGY 3 cut(s) 50, 84, 110
Bse1I ACTGG 1 cut(s) 223
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 3 cut(s) 72, 255, 321
BseGI GGATG 1 cut(s) 484
BseLI CCNNNNNNNGG 2 cut(s) 50, 322
BseNI ACTGG 1 cut(s) 223
BseX3I CGGCCG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 95
BshFI GGCC 2 cut(s) 84, 94
BsiEI CGRYCG 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 348
BsiSI CCGG 4 cut(s) 51, 85, 91, 111
BslFI GGGAC 1 cut(s) 211
BslI CCNNNNNNNGG 2 cut(s) 50, 322
BsmAI GTCTC 1 cut(s) 493
BsmFI GGGAC 1 cut(s) 211
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 2 cut(s) 84, 94
Bso31I GGTCTC 1 cut(s) 493
Bsp1286I GDGCHC 1 cut(s) 348
Bsp1407I TGTACA 1 cut(s) 419
Bsp143I GATC 3 cut(s) 105, 138, 300
BspACI CCGC 4 cut(s) 95, 220, 298, 318
BspANI GGCC 2 cut(s) 84, 94
BspLI GGNNCC 2 cut(s) 89, 183
BspPI GGATC 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 493
BsrBI CCGCTC 1 cut(s) 298
BsrFI RCCGGY 3 cut(s) 50, 84, 110
BsrGI TGTACA 1 cut(s) 419
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 3 cut(s) 50, 84, 110
BssECI CCNNGG 3 cut(s) 72, 255, 321
BssMI GATC 3 cut(s) 105, 138, 300
BssNI GRCGYC 3 cut(s) 54, 114, 267
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 1 cut(s) 217
BstACI GRCGYC 3 cut(s) 54, 114, 267
BstAUI TGTACA 1 cut(s) 419
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 395
BstF5I GGATG 1 cut(s) 484
BstHHI GCGC 3 cut(s) 153, 254, 275
BstKTI GATC 3 cut(s) 108, 141, 303
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 3 cut(s) 105, 138, 300
BstMCI CGRYCG 1 cut(s) 95
BstMWI GCNNNNNNNGC 6 cut(s) 126, 159, 219, 244, 343, 407
BstNI CCWGG 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 113
BstZI CGGCCG 1 cut(s) 92
BsuRI GGCC 2 cut(s) 84, 94
BtsCI GGATG 1 cut(s) 484
Cac8I GCNNGC 1 cut(s) 52
CfoI GCGC 3 cut(s) 153, 254, 275
Cfr10I RCCGGY 3 cut(s) 50, 84, 110
CseI GACGC 3 cut(s) 43, 103, 256
Csp6I GTAC 5 cut(s) 157, 166, 204, 420, 499
CviJI RGCY 9 cut(s) 84, 94, 172, 238, 247, 332, 346, 356, 401
CviKI_1 RGCY 9 cut(s) 84, 94, 172, 238, 247, 332, 346, 356, 401
CviQI GTAC 5 cut(s) 157, 166, 204, 420, 499
DdeI CTNAG 1 cut(s) 395
DpnI GATC 3 cut(s) 107, 140, 302
DpnII GATC 3 cut(s) 105, 138, 300
EaeI YGGCCR 1 cut(s) 92
EagI CGGCCG 1 cut(s) 92
EciI GGCGGA 1 cut(s) 209
Ecl136II GAGCTC 1 cut(s) 346
EclXI CGGCCG 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 348
Eco31I GGTCTC 1 cut(s) 493
Eco52I CGGCCG 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 255
FaiI YATR 3 cut(s) 406, 418, 454
FaqI GGGAC 1 cut(s) 211
FauI CCCGC 1 cut(s) 325
Fnu4HI GCNGC 2 cut(s) 95, 127
FokI GGATG 1 cut(s) 491
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 2 cut(s) 95, 127
GlaI GCGC 3 cut(s) 152, 253, 274
GluI GCNGC 2 cut(s) 95, 127
GsuI CTGGAG 1 cut(s) 332
HaeIII GGCC 2 cut(s) 84, 94
HapII CCGG 4 cut(s) 51, 85, 91, 111
HgaI GACGC 3 cut(s) 43, 103, 256
HhaI GCGC 3 cut(s) 153, 254, 275
Hin1I GRCGYC 3 cut(s) 54, 114, 267
Hin6I GCGC 3 cut(s) 151, 252, 273
HinP1I GCGC 3 cut(s) 151, 252, 273
HinfI GANTC 1 cut(s) 388
HpaII CCGG 4 cut(s) 51, 85, 91, 111
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 422
Hpy188I TCNGA 2 cut(s) 80, 103
Hpy188III TCNNGA 2 cut(s) 307, 361
Hpy8I GTNNAC 1 cut(s) 422
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 2 cut(s) 9, 334
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 3 cut(s) 129, 368, 504
HpyF10VI GCNNNNNNNGC 6 cut(s) 126, 159, 219, 244, 343, 407
HpyF3I CTNAG 1 cut(s) 395
HpySE526I ACGT 1 cut(s) 199
Hsp92I GRCGYC 3 cut(s) 54, 114, 267
HspAI GCGC 3 cut(s) 151, 252, 273
KroI GCCGGC 1 cut(s) 50
KroNI GCCGGC 1 cut(s) 52
Kzo9I GATC 3 cut(s) 105, 138, 300
LmnI GCTCC 2 cut(s) 343, 351
LpnPI CCDG 8 cut(s) 64, 98, 104, 124, 236, 335, 362, 439
Lsp1109I GCAGC 1 cut(s) 113
MaeII ACGT 1 cut(s) 199
MalI GATC 3 cut(s) 107, 140, 302
MbiI CCGCTC 1 cut(s) 298
MboI GATC 3 cut(s) 105, 138, 300
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 2 cut(s) 471, 493
MlyI GAGTC 1 cut(s) 382
MmeI TCCRAC 2 cut(s) 58, 81
MnlI CCTC 7 cut(s) 67, 74, 316, 346, 369, 378, 433
MreI CGCCGGCG 1 cut(s) 50
MroNI GCCGGC 1 cut(s) 50
MroXI GAANNNNTTC 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 97
MspI CCGG 4 cut(s) 51, 85, 91, 111
MspR9I CCNGG 1 cut(s) 350
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 6 cut(s) 126, 159, 219, 244, 343, 407
NaeI GCCGGC 1 cut(s) 52
NdeII GATC 3 cut(s) 105, 138, 300
NgoMIV GCCGGC 1 cut(s) 50
NlaIV GGNNCC 2 cut(s) 89, 183
NmeAIII GCCGAG 2 cut(s) 346, 358
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PctI GAATGC 1 cut(s) 370
PdiI GCCGGC 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 29
PfoI TCCNGGA 1 cut(s) 348
PkrI GCNGC 2 cut(s) 96, 128
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Psp124BI GAGCTC 1 cut(s) 348
Psp1406I AACGTT 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 89, 183
RsaI GTAC 5 cut(s) 158, 167, 205, 421, 500
RsaNI GTAC 5 cut(s) 157, 166, 204, 420, 499
SacI GAGCTC 1 cut(s) 348
SatI GCNGC 2 cut(s) 95, 127
Sau3AI GATC 3 cut(s) 105, 138, 300
SchI GAGTC 1 cut(s) 382
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 348
SetI ASST 7 cut(s) 78, 202, 240, 327, 348, 403, 444
SgrAI CRCCGGYG 2 cut(s) 50, 110
Sse9I AATT 2 cut(s) 471, 493
SsiI CCGC 4 cut(s) 95, 220, 298, 318
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 217
TaiI ACGT 1 cut(s) 202
TaqI TCGA 2 cut(s) 141, 438
TasI AATT 2 cut(s) 471, 493
TatI WGTACW 3 cut(s) 165, 419, 498
TauI GCSGC 1 cut(s) 97
TseI GCWGC 1 cut(s) 126
TspGWI ACGGA 2 cut(s) 27, 194
XapI RAATTY 1 cut(s) 493
XmnI GAANNNNTTC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.