Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006795

Physical Location & Seq

Genomic Coordinates Forward (+)

64424042 .. 64425911

Gene Structure 1870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0513300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGGTATCCATGGAGGTTTGGTCAGGAGTGTCTTTTCGAGAAACCGATCTTTTAAGACTCATGAGAGCAATGGGAGGAACAATATGACAGAACGGAGAAGATGGAGCTCAGTTAGACTCAGATCATATCTATGTGGGGATGAATTTAAGTCAGTGGTTGCAGACAAGGATTCAGCTTCAGTTAGGAGCTTTGAGGCTAGTGTATCGCAGCTCAATTCGGTGCTTGTAGAGGTGGATTCTTGTTCTTCTGAGAGCTCTGAGGCCACTGTTACACAACCATTGCACGAAGACTTAACAGACAAGAAAGATATGCACGTCTACAACACAATGTCTGAAGAGCAAGCAGCAATCATCATCCAGTCAGCATTTAGAGGCTTTCTGACTAGGTGTCAAAATGAAAGGATCAAATCAGAGGTTGGTAAACAGGAGCTTATTGTAGGATCAGAAAGTCCAAGTATGGAGTCTCTGGGGACATCAGTTGAAGTTCAAACAGGAAATTCAGTGGAAGTGCACTCTAGACAGGAGGAAAACTTGGCTACTCAACACCGGCTGACACAACAGAAAGCTAGAGCGCAAGTGCTAAGGCTTAAGGAAGACTGGGATGATAGCACATTGAGTAGCAACATGTCAAAAATGAGGATGCAGAACAGACTGGAAGCGACAACCAGGCGTGAGAGAGCGTTAGCTTATGCCTTTTCACAACAGCTACGGATCTGTTCAAAGAAAAAACATGCGAAATCTGATGGCACAGAACAGAATATGGGGTGGAGCTGGCTAGAACGATGGATGGCAACCCGCCTCCCCGAAAGCTCAAGCTCATTGGTTGAAACTCCTACAAGCAATATTCAGCAGGTTGAGCCAATTTACAGCAACCAAAGAGTTGTGATGATCAGGAAGAGATTATTTGACGGGATGGGTGAAGAGAAAGAGAGCTGTGGATCTAATGAGGTGACTGTTGCATTTGATAACTTTTCAGTAACAACAGAAGAAGAGAACAGTAGCTTCAACTCAGTTGATCAAAGCAGGGTCAAGGCTACGAAAGGTGTATCAAGGCGAAAAACTATGCCGAGTCAGGAGTGTGGGAAAGATTACCTCAAGGTAAGCAAGAAGGATTGTTCAAGAGAGGCTGAGAAAGATGCAATCGACAAGTCGAAGAAAACCGGGAGTGTCAAGTGCAAAAACTCTTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2039

Protein Analysis

397

Amino Acids

44.87

Weight (kDa)

8.79

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02220
fragaria_vesca	FvH4_6g46551 FvH4_6g46551
malus_domestica	MD09G1072600.v1.1 MD17G1063100.v1.1 MD17G1063300.v1.1 MD17G1063700.v1.1
prunus_persica	Prupe.3G250800_v2.0.a1
pyrus_communis	pycom12433g00050 pycom17g06220 pycom17g06290 pycom17g06410
rosa_chinensis	RchiOBHm_Chr2g0165201
rosa_laevigata	RLG00000021516
rosa_multiflora	Rmu_sc0001097.1_g000046 Rmu_sc0012583.1_g000002
rosa_roxburghii	Rroxscaffold_2G00085940
rosa_rugosa	Rorug02G0513100 Rorug02G0513200 Rorug02G0513300
rosa_samantha	Rh2AG581400 Rh2BG592700 Rh2CG563400 Rh2DG602700
rosa_wichuraiana	Rw0G008400 Rw2G048290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	841
AccI	GTMKAC	1 cut(s)	318
AciI	CCGC	1 cut(s)	796
AclWI	GGATC	4 cut(s)	410, 448, 719, 946
AcsI	RAATTY	2 cut(s)	143, 496
AcuI	CTGAAG	2 cut(s)	162, 354
AflII	CTTAAG	1 cut(s)	587
AflIII	ACRYGT	1 cut(s)	624
AgsI	TTSAA	6 cut(s)	482, 488, 720, 827, 1006, 1119
AhdI	GACNNNNNGTC	1 cut(s)	387
AjiI	CACGTC	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	665
Alw21I	GWGCWC	3 cut(s)	110, 257, 513
Alw26I	GTCTC	1 cut(s)	468
Alw44I	GTGCAC	1 cut(s)	509
AlwI	GGATC	4 cut(s)	410, 448, 719, 946
AoxI	GGCC	1 cut(s)	261
ApaLI	GTGCAC	1 cut(s)	509
ApeKI	GCWGC	2 cut(s)	208, 344
ApoI	RAATTY	2 cut(s)	143, 496
AspLEI	GCGC	1 cut(s)	574
AsuC2I	CCSGG	1 cut(s)	1162
AsuHPI	GGTGA	2 cut(s)	929, 961
BaeGI	GKGCMC	1 cut(s)	513
BanII	GRGCYC	2 cut(s)	110, 257
BbsI	GAAGAC	2 cut(s)	294, 600
Bbv12I	GWGCWC	3 cut(s)	110, 257, 513
BbvI	GCAGC	2 cut(s)	220, 356
BccI	CCATC	5 cut(s)	96, 737, 777, 781, 907
BciT130I	CCWGG	1 cut(s)	667
BciVI	GTATCC	1 cut(s)	17
BclI	TGATCA	2 cut(s)	888, 1015
BcnI	CCSGG	1 cut(s)	1162
BcoDI	GTCTC	1 cut(s)	468
BfaI	CTAG	5 cut(s)	198, 384, 516, 567, 776
BfrI	CTTAAG	1 cut(s)	587
BfuAI	ACCTGC	1 cut(s)	841
BfuI	GTATCC	1 cut(s)	17
BisI	GCNGC	2 cut(s)	209, 345
BlsI	GCNGC	2 cut(s)	210, 346
Bme1390I	CCNGG	2 cut(s)	667, 1162
BmeRI	GACNNNNNGTC	1 cut(s)	387
BmgBI	CACGTC	1 cut(s)	316
BmrFI	CCNGG	2 cut(s)	667, 1162
BmrI	ACTGGG	1 cut(s)	607
BmsI	GCATC	2 cut(s)	630, 1126
BmuI	ACTGGG	1 cut(s)	607
BpiI	GAAGAC	2 cut(s)	294, 600
Bpu10I	CCTNAGC	1 cut(s)	581
BpuEI	CTTGAG	2 cut(s)	796, 1079
BpuMI	CCSGG	1 cut(s)	1162
BsaJI	CCNNGG	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bse118I	RCCGGY	1 cut(s)	546
Bse1I	ACTGG	3 cut(s)	358, 602, 657
Bse3DI	GCAATG	2 cut(s)	76, 278
BseBI	CCWGG	1 cut(s)	667
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	6 cut(s)	145, 354, 607, 645, 792, 918
BseMI	GCAATG	2 cut(s)	76, 278
BseMII	CTCAG	6 cut(s)	123, 133, 240, 249, 1023, 1119
BseNI	ACTGG	3 cut(s)	358, 602, 657
BseSI	GKGCMC	1 cut(s)	513
BseXI	GCAGC	2 cut(s)	220, 356
BshFI	GGCC	1 cut(s)	263
BsiHKAI	GWGCWC	3 cut(s)	110, 257, 513
BsiSI	CCGG	2 cut(s)	547, 1161
BslFI	GGGAC	1 cut(s)	484
BsmAI	GTCTC	1 cut(s)	468
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	1 cut(s)	263
Bsp1286I	GDGCHC	3 cut(s)	110, 257, 513
Bsp143I	GATC	8 cut(s)	47, 122, 402, 440, 711, 888, 938, 1015
Bsp19I	CCATGG	1 cut(s)	10
BspACI	CCGC	1 cut(s)	796
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	6 cut(s)	122, 132, 241, 250, 1022, 1120
BspHI	TCATGA	1 cut(s)	61
BspMI	ACCTGC	1 cut(s)	841
BspPI	GGATC	4 cut(s)	410, 448, 719, 946
BspQI	GCTCTTC	1 cut(s)	330
BspTI	CTTAAG	1 cut(s)	587
BsrDI	GCAATG	2 cut(s)	76, 278
BsrFI	RCCGGY	1 cut(s)	546
BsrI	ACTGG	3 cut(s)	358, 602, 657
BssAI	RCCGGY	1 cut(s)	546
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	8 cut(s)	47, 122, 402, 440, 711, 888, 938, 1015
BssT1I	CCWWGG	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	667
Bst4CI	ACNGT	3 cut(s)	268, 955, 998
Bst6I	CTCTTC	5 cut(s)	330, 890, 915, 984, 1189
BstAFI	CTTAAG	1 cut(s)	587
BstC8I	GCNNGC	2 cut(s)	342, 773
BstDEI	CTNAG	7 cut(s)	109, 119, 249, 258, 581, 1009, 1128
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	6 cut(s)	145, 354, 607, 645, 792, 918
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	8 cut(s)	50, 125, 405, 443, 714, 891, 941, 1018
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	8 cut(s)	47, 122, 402, 440, 711, 888, 938, 1015
BstMWI	GCNNNNNNNGC	1 cut(s)	856
BstNI	CCWGG	1 cut(s)	667
BstNSI	RCATGY	2 cut(s)	628, 734
BstSCI	CCNGG	2 cut(s)	665, 1160
BstSLI	GKGCMC	1 cut(s)	513
BstV1I	GCAGC	2 cut(s)	220, 356
BstV2I	GAAGAC	2 cut(s)	294, 600
BstX2I	RGATCY	2 cut(s)	711, 938
BstYI	RGATCY	2 cut(s)	711, 938
BsuI	GTATCC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	263
BtgI	CCRYGG	1 cut(s)	10
BtrI	CACGTC	1 cut(s)	316
BtsCI	GGATG	6 cut(s)	145, 354, 607, 645, 792, 918
BtsIMutI	CAGTG	3 cut(s)	159, 264, 507
BveI	ACCTGC	1 cut(s)	841
Cac8I	GCNNGC	2 cut(s)	342, 773
CciI	TCATGA	1 cut(s)	61
CfoI	GCGC	1 cut(s)	574
Cfr10I	RCCGGY	1 cut(s)	546
CviAII	CATG	4 cut(s)	11, 62, 625, 731
DdeI	CTNAG	7 cut(s)	109, 119, 249, 258, 581, 1009, 1128
DpnI	GATC	8 cut(s)	49, 124, 404, 442, 713, 890, 940, 1017
DpnII	GATC	8 cut(s)	47, 122, 402, 440, 711, 888, 938, 1015
DriI	GACNNNNNGTC	1 cut(s)	387
Eam1104I	CTCTTC	5 cut(s)	330, 890, 915, 984, 1189
Eam1105I	GACNNNNNGTC	1 cut(s)	387
EarI	CTCTTC	5 cut(s)	330, 890, 915, 984, 1189
Ecl136II	GAGCTC	2 cut(s)	108, 255
Eco130I	CCWWGG	1 cut(s)	10
Eco24I	GRGCYC	2 cut(s)	110, 257
Eco53kI	GAGCTC	2 cut(s)	108, 255
Eco57I	CTGAAG	2 cut(s)	162, 354
EcoICRI	GAGCTC	2 cut(s)	108, 255
EcoRII	CCWGG	1 cut(s)	665
EcoT14I	CCWWGG	1 cut(s)	10
EcoT38I	GRGCYC	2 cut(s)	110, 257
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	4 cut(s)	14, 65, 628, 734
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	4 cut(s)	10, 61, 624, 730
FauI	CCCGC	1 cut(s)	803
FbaI	TGATCA	2 cut(s)	888, 1015
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	2 cut(s)	209, 345
FokI	GGATG	6 cut(s)	152, 341, 614, 652, 799, 925
FriOI	GRGCYC	2 cut(s)	110, 257
Fsp4HI	GCNGC	2 cut(s)	209, 345
FspBI	CTAG	5 cut(s)	198, 384, 516, 567, 776
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	2 cut(s)	209, 345
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	2 cut(s)	547, 1161
HhaI	GCGC	1 cut(s)	574
Hin1II	CATG	4 cut(s)	14, 65, 628, 734
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HinfI	GANTC	6 cut(s)	58, 117, 170, 236, 461, 1069
HpaII	CCGG	2 cut(s)	547, 1161
HphI	GGTGA	2 cut(s)	929, 961
Hpy166II	GTNNAC	3 cut(s)	319, 422, 511
Hpy188I	TCNGA	8 cut(s)	122, 250, 259, 334, 381, 412, 445, 742
Hpy188III	TCNNGA	7 cut(s)	25, 39, 62, 516, 892, 1073, 1119
Hpy8I	GTNNAC	3 cut(s)	319, 422, 511
HpyAV	CCTTC	1 cut(s)	1102
HpyCH4III	ACNGT	3 cut(s)	268, 955, 998
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	8 cut(s)	161, 283, 313, 511, 643, 959, 1139, 1176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	856
HpyF3I	CTNAG	7 cut(s)	109, 119, 249, 258, 581, 1009, 1128
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	4 cut(s)	14, 65, 628, 734
HspAI	GCGC	1 cut(s)	572
Ksp22I	TGATCA	2 cut(s)	888, 1015
Kzo9I	GATC	8 cut(s)	47, 122, 402, 440, 711, 888, 938, 1015
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	4 cut(s)	105, 186, 427, 768
Lsp1109I	GCAGC	2 cut(s)	220, 356
LweI	GCATC	2 cut(s)	630, 1126
MaeI	CTAG	5 cut(s)	198, 384, 516, 567, 776
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	3 cut(s)	268, 949, 976
MalI	GATC	8 cut(s)	49, 124, 404, 442, 713, 890, 940, 1017
MboI	GATC	8 cut(s)	47, 122, 402, 440, 711, 888, 938, 1015
MflI	RGATCY	2 cut(s)	711, 938
MhlI	GDGCHC	3 cut(s)	110, 257, 513
MluCI	AATT	4 cut(s)	143, 214, 496, 861
MlyI	GAGTC	4 cut(s)	52, 111, 470, 1078
MseI	TTAA	4 cut(s)	54, 147, 293, 588
MslI	CAYNNNNRTG	1 cut(s)	130
MspCI	CTTAAG	1 cut(s)	587
MspI	CCGG	2 cut(s)	547, 1161
MspR9I	CCNGG	2 cut(s)	667, 1162
MvaI	CCWGG	1 cut(s)	667
MwoI	GCNNNNNNNGC	1 cut(s)	856
NciI	CCSGG	1 cut(s)	1162
NcoI	CCATGG	1 cut(s)	10
NdeII	GATC	8 cut(s)	47, 122, 402, 440, 711, 888, 938, 1015
NlaIII	CATG	4 cut(s)	14, 65, 628, 734
NmeAIII	GCCGAG	1 cut(s)	1092
NmuCI	GTSAC	1 cut(s)	949
NspI	RCATGY	2 cut(s)	628, 734
PagI	TCATGA	1 cut(s)	61
PciI	ACATGT	1 cut(s)	624
PciSI	GCTCTTC	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	170, 236
PkrI	GCNGC	2 cut(s)	210, 346
PleI	GAGTC	4 cut(s)	52, 111, 469, 1077
PpsI	GAGTC	4 cut(s)	52, 111, 469, 1077
PscI	ACATGT	1 cut(s)	624
Psp124BI	GAGCTC	2 cut(s)	110, 257
Psp6I	CCWGG	1 cut(s)	665
PspGI	CCWGG	1 cut(s)	665
PsuI	RGATCY	2 cut(s)	711, 938
RseI	CAYNNNNRTG	1 cut(s)	130
SacI	GAGCTC	2 cut(s)	110, 257
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	4 cut(s)	54, 147, 293, 588
SatI	GCNGC	2 cut(s)	209, 345
Sau3AI	GATC	8 cut(s)	47, 122, 402, 440, 711, 888, 938, 1015
SchI	GAGTC	4 cut(s)	52, 111, 470, 1078
ScrFI	CCNGG	2 cut(s)	667, 1162
SduI	GDGCHC	3 cut(s)	110, 257, 513
SfaNI	GCATC	2 cut(s)	630, 1126
SmiMI	CAYNNNNRTG	1 cut(s)	130
SmlI	CTYRAG	3 cut(s)	587, 811, 1094
SmoI	CTYRAG	3 cut(s)	587, 811, 1094
Sse9I	AATT	4 cut(s)	143, 214, 496, 861
SsiI	CCGC	1 cut(s)	796
SspI	AATATT	1 cut(s)	844
SspMI	CTAG	5 cut(s)	198, 384, 516, 567, 776
SstI	GAGCTC	2 cut(s)	110, 257
StyD4I	CCNGG	2 cut(s)	665, 1160
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	3 cut(s)	268, 955, 998
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	3 cut(s)	38, 1143, 1151
TasI	AATT	4 cut(s)	143, 214, 496, 861
TfiI	GAWTC	2 cut(s)	170, 236
Tru1I	TTAA	4 cut(s)	54, 147, 293, 588
Tru9I	TTAA	4 cut(s)	54, 147, 293, 588
TscAI	CASTG	3 cut(s)	159, 271, 507
TseFI	GTSAC	1 cut(s)	949
TseI	GCWGC	2 cut(s)	208, 344
Tsp45I	GTSAC	1 cut(s)	949
TspDTI	ATGAA	3 cut(s)	156, 411, 1176
TspGWI	ACGGA	2 cut(s)	109, 724
TspRI	CASTG	3 cut(s)	159, 271, 507
Vha464I	CTTAAG	1 cut(s)	587
VneI	GTGCAC	1 cut(s)	509
XapI	RAATTY	2 cut(s)	143, 496
XbaI	TCTAGA	1 cut(s)	515
XceI	RCATGY	2 cut(s)	628, 734
XmiI	GTMKAC	1 cut(s)	318
XspI	CTAG	5 cut(s)	198, 384, 516, 567, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.