Prupe.3G250800_v2.0.a1

protein C9orf85 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0006795
Physical Location & Seq
Reverse (-)
24096383 .. 24097808
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G250800.1

Sequence Viewer

Length: 588 bp
ATGATGAACGGTAGGCACCAAAACAAATTCGCATGGAAGCCCAACCTCGGCGTCAAAATCAACGAAACGGAGGTCGGAGGCCGGTTCAGGCCGCTGTCGGATATTACGGGGGTCTGCCCTCGCTGTAAGGAGCAGATCGAATGGAAACGCCGTTACGGCAAGTACAAGACCCTAACGGAGCCAACCAAGTGCCAACGTTGTACCAAGCGCGCCGTTCGTCAGTCTCACCATAAACTCTGTTCTGCTTGCGCCAAGGAACAAGGTGTTTGTGCAAAGTGCTGTTGCCGTGTCGAACGTATCGTTGGAAAAGACCCTTCGGAAGTGGAAGCTGAGCAAAAAAAGCTTCAGGAGGCCATAAAAAATGCTCGAGAAAGAGATAGGAGGACACTGATACGTGCGATGAACGCAGGCAAAGCTACTGGTTTAGTGAAAGCGGCAACCAACAAAGATGACAAGGCTGGGGATTTGTTCCCCTCTGCATCACTTGAAGAATATGCAGAGGCAAGCAGAGATGATAATGATGATGATGATGATGATGATGATGAAGAAGGTGAAGAAGAAGAAAATGAGGACCATGTTTGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2039

Protein Analysis

196

Amino Acids

22.14

Weight (kDa)

6.16

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 15
AccII CGCG 1 cut(s) 210
AciI CCGC 2 cut(s) 92, 434
AclI AACGTT 1 cut(s) 196
AcsI RAATTY 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 329
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 2 cut(s) 164, 202
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 1 cut(s) 488
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AluBI AGCT 3 cut(s) 329, 343, 416
AluI AGCT 3 cut(s) 329, 343, 416
Alw26I GTCTC 1 cut(s) 228
Ama87I CYCGRG 1 cut(s) 366
AoxI GGCC 3 cut(s) 79, 89, 351
ApoI RAATTY 1 cut(s) 26
ArsI GACNNNNNNTTYG 2 cut(s) 57, 89
AspLEI GCGC 3 cut(s) 210, 212, 251
AspS9I GGNCC 1 cut(s) 571
AsuHPI GGTGA 2 cut(s) 218, 563
AvaI CYCGRG 1 cut(s) 366
AvaII GGWCC 1 cut(s) 571
BanI GGYRCC 1 cut(s) 15
BceAI ACGGC 4 cut(s) 135, 172, 197, 270
BcoDI GTCTC 1 cut(s) 228
BglI GCCNNNNNGGC 1 cut(s) 156
BisI GCNGC 2 cut(s) 92, 435
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 2 cut(s) 93, 436
Bme18I GGWCC 1 cut(s) 571
BmeT110I CYCGRG 1 cut(s) 366
BmgT120I GGNCC 1 cut(s) 571
BmiI GGNNCC 2 cut(s) 17, 180
BmsI GCATC 1 cut(s) 488
Bpu1102I GCTNAGC 1 cut(s) 330
BsaAI YACGTR 1 cut(s) 395
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 2 cut(s) 46, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse118I RCCGGY 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 424
BseDI CCNNGG 2 cut(s) 46, 252
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 1 cut(s) 424
BsePI GCGCGC 1 cut(s) 208
BseYI CCCAGC 1 cut(s) 458
Bsh1236I CGCG 1 cut(s) 210
BshFI GGCC 3 cut(s) 81, 91, 353
BshNI GGYRCC 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 366
BsiSI CCGG 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 1 cut(s) 228
BsnI GGCC 3 cut(s) 81, 91, 353
BsoBI CYCGRG 1 cut(s) 366
Bsp143I GATC 1 cut(s) 135
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 2 cut(s) 92, 434
BspANI GGCC 3 cut(s) 81, 91, 353
BspCNI CTCAG 1 cut(s) 322
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 17, 180
BspT107I GGYRCC 1 cut(s) 15
BsrFI RCCGGY 1 cut(s) 81
BsrI ACTGG 1 cut(s) 424
BssAI RCCGGY 1 cut(s) 81
BssECI CCNNGG 2 cut(s) 46, 252
BssHII GCGCGC 1 cut(s) 208
BssMI GATC 1 cut(s) 135
BssNI GRCGYC 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 395
BstC8I GCNNGC 4 cut(s) 210, 247, 409, 505
BstDEI CTNAG 1 cut(s) 330
BstFNI CGCG 1 cut(s) 210
BstHHI GCGC 3 cut(s) 210, 212, 251
BstKTI GATC 1 cut(s) 138
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 1 cut(s) 135
BstMWI GCNNNNNNNGC 4 cut(s) 156, 340, 404, 413
BstUI CGCG 1 cut(s) 210
BsuRI GGCC 3 cut(s) 81, 91, 353
BtgZI GCGATG 1 cut(s) 413
BtsIMutI CAGTG 1 cut(s) 386
Cac8I GCNNGC 4 cut(s) 210, 247, 409, 505
CfoI GCGC 3 cut(s) 210, 212, 251
Cfr10I RCCGGY 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 571
CseI GACGC 1 cut(s) 40
Csp6I GTAC 2 cut(s) 163, 201
CviAII CATG 2 cut(s) 33, 575
CviJI RGCY 9 cut(s) 40, 81, 91, 181, 329, 343, 353, 416, 458
CviKI_1 RGCY 9 cut(s) 40, 81, 91, 181, 329, 343, 353, 416, 458
CviQI GTAC 2 cut(s) 163, 201
DdeI CTNAG 1 cut(s) 330
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 571
Eco57I CTGAAG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 366
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 2 cut(s) 36, 578
FaiI YATR 5 cut(s) 34, 231, 356, 495, 576
FatI CATG 2 cut(s) 32, 574
Fnu4HI GCNGC 2 cut(s) 92, 435
Fsp4HI GCNGC 2 cut(s) 92, 435
GlaI GCGC 3 cut(s) 209, 211, 250
GluI GCNGC 2 cut(s) 92, 435
GsaI CCCAGC 1 cut(s) 462
HaeIII GGCC 3 cut(s) 81, 91, 353
HapII CCGG 1 cut(s) 82
HgaI GACGC 1 cut(s) 40
HhaI GCGC 3 cut(s) 210, 212, 251
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 2 cut(s) 36, 578
Hin6I GCGC 3 cut(s) 208, 210, 249
HinP1I GCGC 3 cut(s) 208, 210, 249
HindIII AAGCTT 1 cut(s) 341
HpaII CCGG 1 cut(s) 82
HphI GGTGA 2 cut(s) 218, 563
Hpy188I TCNGA 3 cut(s) 77, 100, 319
Hpy188III TCNNGA 2 cut(s) 347, 368
HpyAV CCTTC 2 cut(s) 324, 542
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 3 cut(s) 196, 295, 394
HpyCH4V TGCA 3 cut(s) 272, 479, 497
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 340, 404, 413
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 3 cut(s) 196, 295, 394
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 2 cut(s) 36, 578
HspAI GCGC 3 cut(s) 208, 210, 249
Kzo9I GATC 1 cut(s) 135
LmnI GCTCC 2 cut(s) 130, 178
LpnPI CCDG 6 cut(s) 73, 95, 332, 393, 405, 444
LweI GCATC 1 cut(s) 488
MaeII ACGT 3 cut(s) 196, 295, 394
MaeIII GTNAC 1 cut(s) 152
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 5 cut(s) 500, 557, 566, 569, 572
MluCI AATT 2 cut(s) 26, 583
MmeI TCCRAC 3 cut(s) 55, 78, 283
MnlI CCTC 9 cut(s) 56, 64, 71, 129, 343, 375, 484, 493, 562
MseI TTAA 1 cut(s) 586
MspA1I CMGCKG 1 cut(s) 94
MspI CCGG 1 cut(s) 82
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 4 cut(s) 156, 340, 404, 413
NdeII GATC 1 cut(s) 135
NlaIII CATG 2 cut(s) 36, 578
NlaIV GGNNCC 2 cut(s) 17, 180
NmeAIII GCCGAG 1 cut(s) 27
PaeR7I CTCGAG 1 cut(s) 366
PauI GCGCGC 1 cut(s) 208
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PkrI GCNGC 2 cut(s) 93, 436
Ppu21I YACGTR 1 cut(s) 395
Psp1406I AACGTT 1 cut(s) 196
PspFI CCCAGC 1 cut(s) 458
PspN4I GGNNCC 2 cut(s) 17, 180
PspPI GGNCC 1 cut(s) 571
PteI GCGCGC 1 cut(s) 208
RsaI GTAC 2 cut(s) 164, 202
RsaNI GTAC 2 cut(s) 163, 201
SaqAI TTAA 1 cut(s) 586
SatI GCNGC 2 cut(s) 92, 435
Sau3AI GATC 1 cut(s) 135
Sau96I GGNCC 1 cut(s) 571
SfaNI GCATC 1 cut(s) 488
Sfr274I CTCGAG 1 cut(s) 366
SinI GGWCC 1 cut(s) 571
SlaI CTCGAG 1 cut(s) 366
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
Sse9I AATT 2 cut(s) 26, 583
SsiI CCGC 2 cut(s) 92, 434
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 3 cut(s) 199, 298, 397
TaqI TCGA 3 cut(s) 138, 291, 367
TasI AATT 2 cut(s) 26, 583
TatI WGTACW 1 cut(s) 162
TauI GCSGC 2 cut(s) 94, 437
Tru1I TTAA 1 cut(s) 586
Tru9I TTAA 1 cut(s) 586
TscAI CASTG 1 cut(s) 393
TspDTI ATGAA 3 cut(s) 20, 416, 558
TspGWI ACGGA 2 cut(s) 83, 191
TspRI CASTG 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 571
XapI RAATTY 1 cut(s) 26
XhoI CTCGAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.