RchiOBHm_Chr2g0165201

protein C9orf85 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006795
Physical Location & Seq
Reverse (-)
80202952 .. 80204222
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53317

Sequence Viewer

Length: 594 bp
ATGATGATCAACGGTCGGCACAAGAACAAGTTCGCTTGGAAACCCAACGCCGGCGTCAAAATCAACGAAACCGAGGTCGGAGGCCGGTTCCGGCCGCTGTCGGAGATCACCGGCGTCTGCCAACGCTGCAAGGAACAGATCGAGTGGAAGCGCAAGTACGGCAAGTACAAGCCCCTAACGGAACCGACCAAGTGCCAACGTTGTACCAAACGCGCCGTCCGCCAGTCCCACCACAAGCTCTGTCAGCCTTGCGCCAAGGAACACGGCGTCTGCGCCAAGTGTTGTTGTCGCAACGAGCGGATCGTCGGGAAAGACCCCGCCGAGATTGAAGCCGAGCAGAAGGAGCTCCAGGAGGCTATCAAGAATGCAAGAGAGAGGGATAGGAGGACTCTGCTAAGAGCTATGAATGCAGGTAAATCGATGAAGACTGCGACTGAGAAAGAAGAGAAGGGAGACAAGGCTGGGGATTCGGCGCTCTCTGCTTTGCTAGAGGAACATGCAGAGGCAACTAGAGATGATGAGGGTGATTCTGATGGTGATGATGATGATGATGAAGAAGAAGAAGAGGAGGATGAGGAGGGTGTTCGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2039

Protein Analysis

197

Amino Acids

22.42

Weight (kDa)

5.87

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2039 PF10217 6 - 96 1.6e-27 Uncharacterized conserved protein (DUF2039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 401
AccBSI CCGCTC 1 cut(s) 298
AccII CGCG 1 cut(s) 213
AciI CCGC 4 cut(s) 95, 220, 298, 318
AclI AACGTT 1 cut(s) 199
AclWI GGATC 1 cut(s) 308
AcoI YGGCCR 1 cut(s) 92
AcyI GRCGYC 3 cut(s) 54, 114, 267
AfaI GTAC 3 cut(s) 158, 167, 205
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 1 cut(s) 329
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 3 cut(s) 238, 346, 401
AluI AGCT 3 cut(s) 238, 346, 401
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 1 cut(s) 447
AlwI GGATC 1 cut(s) 308
AoxI GGCC 2 cut(s) 82, 92
ApeKI GCWGC 1 cut(s) 126
ArsI GACNNNNNNTTYG 4 cut(s) 60, 92, 201, 233
Asp700I GAANNNNTTC 1 cut(s) 29
AspLEI GCGC 5 cut(s) 153, 215, 254, 275, 475
AsuHPI GGTGA 3 cut(s) 100, 536, 548
BanII GRGCYC 1 cut(s) 348
BarI GAAGNNNNNNTAC 2 cut(s) 140, 172
BbsI GAAGAC 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 113
BccI CCATC 1 cut(s) 527
BceAI ACGGC 3 cut(s) 175, 200, 280
BcgI CGANNNNNNTGC 2 cut(s) 399, 433
BciT130I CCWGG 1 cut(s) 350
BclI TGATCA 1 cut(s) 6
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 2 cut(s) 488, 510
BfoI RGCGCY 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 401
BisI GCNGC 2 cut(s) 95, 127
BlsI GCNGC 2 cut(s) 96, 128
Bme1390I CCNGG 1 cut(s) 350
BmiI GGNNCC 2 cut(s) 89, 183
BmrFI CCNGG 1 cut(s) 350
BpiI GAAGAC 1 cut(s) 431
BpmI CTGGAG 1 cut(s) 332
Bsa29I ATCGAT 1 cut(s) 419
BsaHI GRCGYC 3 cut(s) 54, 114, 267
BsaJI CCNNGG 2 cut(s) 72, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse118I RCCGGY 3 cut(s) 50, 84, 110
Bse1I ACTGG 1 cut(s) 223
BseBI CCWGG 1 cut(s) 350
BseCI ATCGAT 1 cut(s) 419
BseDI CCNNGG 2 cut(s) 72, 255
BseGI GGATG 1 cut(s) 577
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 2 cut(s) 581, 590
BseX3I CGGCCG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 113
BseYI CCCAGC 1 cut(s) 461
Bsh1236I CGCG 1 cut(s) 213
Bsh1285I CGRYCG 2 cut(s) 16, 95
BshFI GGCC 2 cut(s) 84, 94
BshVI ATCGAT 1 cut(s) 419
BsiEI CGRYCG 2 cut(s) 16, 95
BsiHKAI GWGCWC 1 cut(s) 348
BsiSI CCGG 4 cut(s) 51, 85, 91, 111
BslFI GGGAC 1 cut(s) 211
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 447
BsmFI GGGAC 1 cut(s) 211
BsmI GAATGC 2 cut(s) 370, 412
BsnI GGCC 2 cut(s) 84, 94
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 4 cut(s) 6, 105, 138, 300
BspACI CCGC 4 cut(s) 95, 220, 298, 318
BspANI GGCC 2 cut(s) 84, 94
BspCNI CTCAG 1 cut(s) 427
BspDI ATCGAT 1 cut(s) 419
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 89, 183
BspMI ACCTGC 1 cut(s) 401
BspPI GGATC 1 cut(s) 308
BsrBI CCGCTC 1 cut(s) 298
BsrFI RCCGGY 3 cut(s) 50, 84, 110
BsrI ACTGG 1 cut(s) 223
BssAI RCCGGY 3 cut(s) 50, 84, 110
BssECI CCNNGG 2 cut(s) 72, 255
BssMI GATC 4 cut(s) 6, 105, 138, 300
BssNI GRCGYC 3 cut(s) 54, 114, 267
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 2 cut(s) 438, 558
BstACI GRCGYC 3 cut(s) 54, 114, 267
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 2 cut(s) 395, 435
BstF5I GGATG 1 cut(s) 577
BstFNI CGCG 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 5 cut(s) 153, 215, 254, 275, 475
BstKTI GATC 4 cut(s) 9, 108, 141, 303
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 4 cut(s) 6, 105, 138, 300
BstMCI CGRYCG 2 cut(s) 16, 95
BstMWI GCNNNNNNNGC 7 cut(s) 126, 159, 219, 244, 343, 407, 479
BstNI CCWGG 1 cut(s) 350
BstNSI RCATGY 1 cut(s) 500
BstSCI CCNGG 1 cut(s) 348
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 431
BstZI CGGCCG 1 cut(s) 92
Bsu15I ATCGAT 1 cut(s) 419
BsuRI GGCC 2 cut(s) 84, 94
BsuTUI ATCGAT 1 cut(s) 419
BtsCI GGATG 1 cut(s) 577
BveI ACCTGC 1 cut(s) 401
Cac8I GCNNGC 1 cut(s) 52
CfoI GCGC 5 cut(s) 153, 215, 254, 275, 475
Cfr10I RCCGGY 3 cut(s) 50, 84, 110
ClaI ATCGAT 1 cut(s) 419
CseI GACGC 3 cut(s) 43, 103, 256
Csp6I GTAC 3 cut(s) 157, 166, 204
CviAII CATG 1 cut(s) 497
CviQI GTAC 3 cut(s) 157, 166, 204
DdeI CTNAG 2 cut(s) 395, 435
DpnI GATC 4 cut(s) 8, 107, 140, 302
DpnII GATC 4 cut(s) 6, 105, 138, 300
EaeI YGGCCR 1 cut(s) 92
EagI CGGCCG 1 cut(s) 92
Eam1104I CTCTTC 2 cut(s) 438, 558
EarI CTCTTC 2 cut(s) 438, 558
EciI GGCGGA 1 cut(s) 209
Ecl136II GAGCTC 1 cut(s) 346
EclXI CGGCCG 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 348
Eco52I CGGCCG 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 1 cut(s) 500
FaiI YATR 2 cut(s) 404, 498
FaqI GGGAC 1 cut(s) 211
FatI CATG 1 cut(s) 496
FauI CCCGC 1 cut(s) 325
FbaI TGATCA 1 cut(s) 6
Fnu4HI GCNGC 2 cut(s) 95, 127
FokI GGATG 1 cut(s) 584
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 2 cut(s) 95, 127
FspBI CTAG 2 cut(s) 488, 510
GlaI GCGC 5 cut(s) 152, 214, 253, 274, 474
GluI GCNGC 2 cut(s) 95, 127
GsaI CCCAGC 1 cut(s) 465
GsuI CTGGAG 1 cut(s) 332
HaeII RGCGCY 1 cut(s) 476
HaeIII GGCC 2 cut(s) 84, 94
HapII CCGG 4 cut(s) 51, 85, 91, 111
HgaI GACGC 3 cut(s) 43, 103, 256
HhaI GCGC 5 cut(s) 153, 215, 254, 275, 475
Hin1I GRCGYC 3 cut(s) 54, 114, 267
Hin1II CATG 1 cut(s) 500
Hin6I GCGC 5 cut(s) 151, 213, 252, 273, 473
HinP1I GCGC 5 cut(s) 151, 213, 252, 273, 473
HinfI GANTC 3 cut(s) 388, 467, 527
HpaII CCGG 4 cut(s) 51, 85, 91, 111
HphI GGTGA 3 cut(s) 100, 536, 548
Hpy188I TCNGA 3 cut(s) 80, 103, 532
Hpy188III TCNNGA 2 cut(s) 307, 361
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 2 cut(s) 334, 442
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 4 cut(s) 129, 368, 410, 500
HpyF10VI GCNNNNNNNGC 7 cut(s) 126, 159, 219, 244, 343, 407, 479
HpyF3I CTNAG 2 cut(s) 395, 435
HpySE526I ACGT 1 cut(s) 199
Hsp92I GRCGYC 3 cut(s) 54, 114, 267
Hsp92II CATG 1 cut(s) 500
HspAI GCGC 5 cut(s) 151, 213, 252, 273, 473
KroI GCCGGC 1 cut(s) 50
KroNI GCCGGC 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 4 cut(s) 6, 105, 138, 300
LmnI GCTCC 2 cut(s) 343, 351
LpnPI CCDG 9 cut(s) 64, 98, 104, 124, 236, 335, 362, 396, 447
Lsp1109I GCAGC 1 cut(s) 113
MaeI CTAG 2 cut(s) 488, 510
MaeII ACGT 1 cut(s) 199
MalI GATC 4 cut(s) 8, 107, 140, 302
MbiI CCGCTC 1 cut(s) 298
MboI GATC 4 cut(s) 6, 105, 138, 300
MboII GAAGA 6 cut(s) 436, 455, 566, 569, 572, 575
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 1 cut(s) 589
MlyI GAGTC 1 cut(s) 382
MmeI TCCRAC 2 cut(s) 58, 81
MreI CGCCGGCG 1 cut(s) 50
MroNI GCCGGC 1 cut(s) 50
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 1 cut(s) 592
MspA1I CMGCKG 1 cut(s) 97
MspI CCGG 4 cut(s) 51, 85, 91, 111
MspR9I CCNGG 1 cut(s) 350
Mva1269I GAATGC 2 cut(s) 370, 412
MvaI CCWGG 1 cut(s) 350
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 7 cut(s) 126, 159, 219, 244, 343, 407, 479
NaeI GCCGGC 1 cut(s) 52
NdeII GATC 4 cut(s) 6, 105, 138, 300
NgoMIV GCCGGC 1 cut(s) 50
NlaIII CATG 1 cut(s) 500
NlaIV GGNNCC 2 cut(s) 89, 183
NmeAIII GCCGAG 2 cut(s) 346, 358
NspI RCATGY 1 cut(s) 500
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PctI GAATGC 2 cut(s) 370, 412
PdiI GCCGGC 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 467, 527
PfoI TCCNGGA 1 cut(s) 348
PkrI GCNGC 2 cut(s) 96, 128
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Psp124BI GAGCTC 1 cut(s) 348
Psp1406I AACGTT 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 348
PspFI CCCAGC 1 cut(s) 461
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 89, 183
RsaI GTAC 3 cut(s) 158, 167, 205
RsaNI GTAC 3 cut(s) 157, 166, 204
SacI GAGCTC 1 cut(s) 348
SaqAI TTAA 1 cut(s) 592
SatI GCNGC 2 cut(s) 95, 127
Sau3AI GATC 4 cut(s) 6, 105, 138, 300
SchI GAGTC 1 cut(s) 382
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 348
SetI ASST 6 cut(s) 78, 202, 240, 348, 403, 415
SgrAI CRCCGGYG 2 cut(s) 50, 110
Sse9I AATT 1 cut(s) 589
SsiI CCGC 4 cut(s) 95, 220, 298, 318
SspMI CTAG 2 cut(s) 488, 510
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 1 cut(s) 202
TaqI TCGA 2 cut(s) 141, 419
TasI AATT 1 cut(s) 589
TatI WGTACW 1 cut(s) 165
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 2 cut(s) 467, 527
Tru1I TTAA 1 cut(s) 592
Tru9I TTAA 1 cut(s) 592
TseI GCWGC 1 cut(s) 126
TspDTI ATGAA 3 cut(s) 419, 437, 567
TspGWI ACGGA 1 cut(s) 194
XceI RCATGY 1 cut(s) 500
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 2 cut(s) 488, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.