Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006795

Physical Location & Seq

Genomic Coordinates Forward (+)

64421768 .. 64423155

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0513200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCTTCCAACACCGAAGAATCAGCGAAAGTTTCTCTCTTGAGTGACGACGAACTAGGTTCAATCCTCAAGTTGGTTACCGACCCAGATGACAGAAAATCGTTCTCCGAGGTCTGCAAGCAATGGTCCAAAGTCGAGGGTCTAAACCGATCATCGCTCCGTCTTCTCCAATCCGATCTTCTCCGCCGTGTACTACCCAGATGCCCAAATTTGATCACTTTCCAAACCCAGGAGCCCCTCTCCGACGCCGACCTCGAATTCTTAGCCCAAACATGTCCCAGACTCGAAGTCATCAACCTCAGTATTTGTGACAATGAATCCAAGGTTCAAGATTTGGTGTCTGATGGTGTTTGCGCTCTGGCAAATCAGTGTCCGAATATAACAAGGCTTTTGCTTAGAAGAAGACTGAAGGCAGGAGTTGCTTCGGTGATGAAGTTATTACCGAACTTGACGCATTTGGATTTAGGATTATGTCATAAGGTTGAGGACAACGACATTGAAGCAATTGGGTCGGCGGCGAGTTCGATTGCCTATTTGAATTTGGAATCTTGTGTTTGTATCACTGATCGCGGTTTGGGGTTTCTGTCACATGCGTTATTTTCGAAAACATTGAAGACATTGGTGCTTGCTAAGTGTAGTAAGATCACTGATTCAGGGGTTTCGGTTTTGCAGAACATGTGTTGCTTGGAGCATCTGAATTTGGCTAACCATGGAGCGAAAATCACTGATGTAGGAGGTCTGGCAATATCGGAAATCAAAACTCTGAAGACACTGAACTTGTCTGGGCTGATGTCCCTGACAGACCAAACCGTAGTTGCTCTTGCGCAAAATTGCCTCAACTTGGAGGTGCTTGATTTGAGTGACTGTCAGAGGGTGACGAGAGCTGGTCTTCGTGCATTTTCGAGTCATACATGCTTAAATTCTCTTGTATTGCACTATTGTTTTAAGTTTTTTGGGTCTGATTTGGAACACTTGGTGCTGGAGTGTCCGACATTGAAGTGTATTGTGGTGGATGAATATGTGGGACGTCAGATATTGCCGGAAATGCAAGAGAGCACTAGAAGATGTGTGAGGTACAAGTTTATTTGTGATTGGTCTTTCAAAGACGTTGAGAATTTAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2039

Protein Analysis

374

Amino Acids

41.42

Weight (kDa)

5.95

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	15 - 51	2.6e-07	F-box
DUF7885	PF25372	65 - 227	5.9e-07	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02220
fragaria_vesca	FvH4_6g46551 FvH4_6g46551
malus_domestica	MD09G1072600.v1.1 MD17G1063100.v1.1 MD17G1063300.v1.1 MD17G1063700.v1.1
prunus_persica	Prupe.3G250800_v2.0.a1
pyrus_communis	pycom12433g00050 pycom17g06220 pycom17g06290 pycom17g06410
rosa_chinensis	RchiOBHm_Chr2g0165201
rosa_laevigata	RLG00000021516
rosa_multiflora	Rmu_sc0001097.1_g000046 Rmu_sc0012583.1_g000002
rosa_roxburghii	Rroxscaffold_2G00085940
rosa_rugosa	Rorug02G0513100 Rorug02G0513200 Rorug02G0513300
rosa_samantha	Rh2AG581400 Rh2BG592700 Rh2CG563400 Rh2DG602700
rosa_wichuraiana	Rw0G008400 Rw2G048290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1030
Acc16I	TGCGCA	1 cut(s)	825
AccII	CGCG	1 cut(s)	570
AciI	CCGC	3 cut(s)	184, 515, 570
AcsI	RAATTY	6 cut(s)	208, 257, 538, 697, 919, 1114
AcuI	CTGAAG	2 cut(s)	428, 785
AcyI	GRCGYC	2 cut(s)	246, 1027
AdeI	CACNNNGTG	1 cut(s)	976
AfaI	GTAC	2 cut(s)	192, 1076
AfiI	CCNNNNNNNGG	3 cut(s)	73, 229, 841
AflIII	ACRYGT	2 cut(s)	272, 675
AgsI	TTSAA	7 cut(s)	63, 329, 500, 538, 613, 997, 1102
AhdI	GACNNNNNGTC	1 cut(s)	287
AjnI	CCWGG	1 cut(s)	228
AjuI	GAANNNNNNNTTGG	2 cut(s)	162, 194
AluBI	AGCT	1 cut(s)	884
AluI	AGCT	1 cut(s)	884
Alw21I	GWGCWC	1 cut(s)	1058
ApoI	RAATTY	6 cut(s)	208, 257, 538, 697, 919, 1114
AspLEI	GCGC	2 cut(s)	356, 826
AspS9I	GGNCC	1 cut(s)	126
AsuHPI	GGTGA	2 cut(s)	439, 886
AsuII	TTCGAA	1 cut(s)	602
AvaII	GGWCC	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	5 cut(s)	155, 409, 620, 773, 881
Bbv12I	GWGCWC	1 cut(s)	1058
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	1 cut(s)	171
BcgI	CGANNNNNNTGC	2 cut(s)	492, 526
BciT130I	CCWGG	1 cut(s)	230
BclI	TGATCA	1 cut(s)	213
BfaI	CTAG	2 cut(s)	56, 1059
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	126
BmeRI	GACNNNNNGTC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	2 cut(s)	191, 700
BpiI	GAAGAC	5 cut(s)	155, 409, 620, 773, 881
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BpmI	CTGGAG	1 cut(s)	1001
Bpu14I	TTCGAA	1 cut(s)	602
BpuEI	CTTGAG	2 cut(s)	53, 61
BsaHI	GRCGYC	2 cut(s)	246, 1027
BsaJI	CCNNGG	4 cut(s)	108, 228, 321, 709
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 229, 841
Bse3DI	GCAATG	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	4 cut(s)	108, 228, 321, 709
BseGI	GGATG	1 cut(s)	1018
BseLI	CCNNNNNNNGG	3 cut(s)	73, 229, 841
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	570
BsiHKAI	GWGCWC	1 cut(s)	1058
BsiSI	CCGG	1 cut(s)	1040
BslFI	GGGAC	3 cut(s)	261, 778, 1038
BslI	CCNNNNNNNGG	3 cut(s)	73, 229, 841
BsmFI	GGGAC	3 cut(s)	261, 778, 1038
Bsp119I	TTCGAA	1 cut(s)	602
Bsp1286I	GDGCHC	2 cut(s)	237, 1058
Bsp143I	GATC	5 cut(s)	149, 175, 213, 565, 642
Bsp19I	CCATGG	1 cut(s)	709
BspACI	CCGC	3 cut(s)	184, 515, 570
BspCNI	CTCAG	1 cut(s)	312
BspFNI	CGCG	1 cut(s)	570
BspLI	GGNNCC	1 cut(s)	234
BspT104I	TTCGAA	1 cut(s)	602
BsrDI	GCAATG	1 cut(s)	128
BssECI	CCNNGG	4 cut(s)	108, 228, 321, 709
BssMI	GATC	5 cut(s)	149, 175, 213, 565, 642
BssNI	GRCGYC	2 cut(s)	246, 1027
BssT1I	CCWWGG	2 cut(s)	321, 709
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	2 cut(s)	811, 866
BstACI	GRCGYC	2 cut(s)	246, 1027
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstBI	TTCGAA	1 cut(s)	602
BstC8I	GCNNGC	2 cut(s)	119, 627
BstDEI	CTNAG	4 cut(s)	262, 299, 395, 630
BstDSI	CCRYGG	1 cut(s)	709
BstEII	GGTNACC	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	1018
BstFNI	CGCG	1 cut(s)	570
BstHHI	GCGC	2 cut(s)	356, 826
BstKTI	GATC	5 cut(s)	152, 178, 216, 568, 645
BstMBI	GATC	5 cut(s)	149, 175, 213, 565, 642
BstMWI	GCNNNNNNNGC	2 cut(s)	419, 1045
BstNI	CCWGG	1 cut(s)	230
BstNSI	RCATGY	4 cut(s)	276, 593, 679, 915
BstPI	GGTNACC	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	228
BstUI	CGCG	1 cut(s)	570
BstV2I	GAAGAC	5 cut(s)	155, 409, 620, 773, 881
BtgI	CCRYGG	1 cut(s)	709
BtgZI	GCGATG	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	1018
BtsIMutI	CAGTG	5 cut(s)	374, 561, 645, 723, 770
Cac8I	GCNNGC	2 cut(s)	119, 627
CfoI	GCGC	2 cut(s)	356, 826
Cfr13I	GGNCC	1 cut(s)	126
CseI	GACGC	2 cut(s)	254, 460
Csp6I	GTAC	2 cut(s)	191, 1075
CviAII	CATG	5 cut(s)	273, 590, 676, 710, 912
CviJI	RGCY	7 cut(s)	5, 235, 266, 388, 704, 787, 884
CviKI_1	RGCY	7 cut(s)	5, 235, 266, 388, 704, 787, 884
CviQI	GTAC	2 cut(s)	191, 1075
DdeI	CTNAG	4 cut(s)	262, 299, 395, 630
DpnI	GATC	5 cut(s)	151, 177, 215, 567, 644
DpnII	GATC	5 cut(s)	149, 175, 213, 565, 642
DraIII	CACNNNGTG	1 cut(s)	976
DriI	GACNNNNNGTC	1 cut(s)	287
Eam1105I	GACNNNNNGTC	1 cut(s)	287
EciI	GGCGGA	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	321, 709
Eco24I	GRGCYC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	126
Eco57I	CTGAAG	2 cut(s)	428, 785
Eco91I	GGTNACC	1 cut(s)	76
EcoO65I	GGTNACC	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	228
EcoT14I	CCWWGG	2 cut(s)	321, 709
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	2 cut(s)	321, 709
FaeI	CATG	5 cut(s)	276, 593, 679, 713, 915
FaqI	GGGAC	3 cut(s)	261, 778, 1038
FatI	CATG	5 cut(s)	272, 589, 675, 709, 911
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	1 cut(s)	1025
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	516
FspBI	CTAG	2 cut(s)	56, 1059
FspI	TGCGCA	1 cut(s)	825
GlaI	GCGC	2 cut(s)	355, 825
GluI	GCNGC	1 cut(s)	516
GsuI	CTGGAG	1 cut(s)	1001
HapII	CCGG	1 cut(s)	1040
HgaI	GACGC	2 cut(s)	254, 460
HhaI	GCGC	2 cut(s)	356, 826
Hin1I	GRCGYC	2 cut(s)	246, 1027
Hin1II	CATG	5 cut(s)	276, 593, 679, 713, 915
Hin6I	GCGC	2 cut(s)	354, 824
HinP1I	GCGC	2 cut(s)	354, 824
HinfI	GANTC	6 cut(s)	20, 282, 317, 545, 650, 904
HpaII	CCGG	1 cut(s)	1040
HphI	GGTGA	2 cut(s)	439, 886
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188III	TCNNGA	2 cut(s)	40, 329
Hpy8I	GTNNAC	1 cut(s)	191
Hpy99I	CGWCG	2 cut(s)	53, 248
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	2 cut(s)	811, 866
HpyCH4IV	ACGT	2 cut(s)	1027, 1107
HpyCH4V	TGCA	5 cut(s)	117, 670, 896, 934, 1048
HpyF10VI	GCNNNNNNNGC	2 cut(s)	419, 1045
HpyF3I	CTNAG	4 cut(s)	262, 299, 395, 630
HpySE526I	ACGT	2 cut(s)	1027, 1107
Hsp92I	GRCGYC	2 cut(s)	246, 1027
Hsp92II	CATG	5 cut(s)	276, 593, 679, 713, 915
HspAI	GCGC	2 cut(s)	354, 824
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	5 cut(s)	149, 175, 213, 565, 642
LmnI	GCTCC	4 cut(s)	162, 232, 688, 713
LweI	GCATC	2 cut(s)	191, 700
MaeI	CTAG	2 cut(s)	56, 1059
MaeII	ACGT	2 cut(s)	1027, 1107
MaeIII	GTNAC	6 cut(s)	44, 76, 308, 585, 860, 874
MalI	GATC	5 cut(s)	151, 177, 215, 567, 644
MboI	GATC	5 cut(s)	149, 175, 213, 565, 642
MboII	GAAGA	9 cut(s)	29, 155, 170, 411, 414, 625, 778, 881, 1074
MfeI	CAATTG	1 cut(s)	504
MhlI	GDGCHC	2 cut(s)	237, 1058
MluCI	AATT	8 cut(s)	208, 257, 504, 538, 697, 829, 919, 1114
MlyI	GAGTC	2 cut(s)	276, 913
MmeI	TCCRAC	3 cut(s)	33, 267, 1013
MseI	TTAA	3 cut(s)	917, 945, 1118
MslI	CAYNNNNRTG	1 cut(s)	997
MspI	CCGG	1 cut(s)	1040
MspR9I	CCNGG	1 cut(s)	230
MunI	CAATTG	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	230
MvnI	CGCG	1 cut(s)	570
MwoI	GCNNNNNNNGC	2 cut(s)	419, 1045
NcoI	CCATGG	1 cut(s)	709
NdeII	GATC	5 cut(s)	149, 175, 213, 565, 642
NlaIII	CATG	5 cut(s)	276, 593, 679, 713, 915
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	5 cut(s)	44, 308, 585, 860, 874
NsbI	TGCGCA	1 cut(s)	825
NspI	RCATGY	4 cut(s)	276, 593, 679, 915
NspV	TTCGAA	1 cut(s)	602
PciI	ACATGT	2 cut(s)	272, 675
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	4 cut(s)	20, 317, 545, 650
PkrI	GCNGC	1 cut(s)	517
PleI	GAGTC	2 cut(s)	276, 912
PpsI	GAGTC	2 cut(s)	276, 912
PscI	ACATGT	2 cut(s)	272, 675
Psp6I	CCWGG	1 cut(s)	228
PspEI	GGTNACC	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	126
RsaI	GTAC	2 cut(s)	192, 1076
RsaNI	GTAC	2 cut(s)	191, 1075
RseI	CAYNNNNRTG	1 cut(s)	997
SaqAI	TTAA	3 cut(s)	917, 945, 1118
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	5 cut(s)	149, 175, 213, 565, 642
Sau96I	GGNCC	1 cut(s)	126
SchI	GAGTC	2 cut(s)	276, 913
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	2 cut(s)	237, 1058
SfaNI	GCATC	2 cut(s)	191, 700
SfuI	TTCGAA	1 cut(s)	602
SinI	GGWCC	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	997
SmlI	CTYRAG	2 cut(s)	40, 68
SmoI	CTYRAG	2 cut(s)	40, 68
Sse9I	AATT	8 cut(s)	208, 257, 504, 538, 697, 829, 919, 1114
SsiI	CCGC	3 cut(s)	184, 515, 570
SspMI	CTAG	2 cut(s)	56, 1059
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	2 cut(s)	321, 709
TaaI	ACNGT	2 cut(s)	811, 866
TaiI	ACGT	2 cut(s)	1030, 1110
TaqI	TCGA	6 cut(s)	135, 255, 285, 524, 602, 902
TasI	AATT	8 cut(s)	208, 257, 504, 538, 697, 829, 919, 1114
TatI	WGTACW	1 cut(s)	190
TauI	GCSGC	1 cut(s)	518
TfiI	GAWTC	4 cut(s)	20, 317, 545, 650
Tru1I	TTAA	3 cut(s)	917, 945, 1118
Tru9I	TTAA	3 cut(s)	917, 945, 1118
TscAI	CASTG	5 cut(s)	374, 568, 652, 730, 777
TseFI	GTSAC	5 cut(s)	44, 308, 585, 860, 874
Tsp45I	GTSAC	5 cut(s)	44, 308, 585, 860, 874
TspDTI	ATGAA	3 cut(s)	330, 446, 1029
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	5 cut(s)	374, 568, 652, 730, 777
VpaK11BI	GGWCC	1 cut(s)	126
XapI	RAATTY	6 cut(s)	208, 257, 538, 697, 919, 1114
XceI	RCATGY	4 cut(s)	276, 593, 679, 915
XspI	CTAG	2 cut(s)	56, 1059
ZraI	GACGTC	1 cut(s)	1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.