Rroxscaffold_2G00085940

protein C9orf85 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006795
Physical Location & Seq
Forward (+)
8248485 .. 8249611
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00085940.1

Sequence Viewer

Length: 597 bp
ATGATGATCAACGGTAGGCACAAGAACAAGTTCGCTTGGAAACCCAACGCCGGCGTCAAAATCAACGAAACCGAGGTCGGAGGCCGGTTCCGGCCGCTGTCGGAGATCACCGGCGTCTGCCAACGCTGCAAGGAACAGATCGAATGGAAGCGCAAGTACGGCAAGTACAAGCCCCTAACGGAACCGACCAAGTGCCAACGTTGTACCAAACGCGCCGTCCGTCAGTCCCACCACAAGCTCTGTCAGCCTTGCGCCAAGGAGCACGGCGTCTGCGCCAAGTGTTGTTGTCGCAACGAGCGGATCGTCGGGAAAGACCCCGCCGAGGTTGAAGCCGAGCAGAAGGAGCTCCAGGAGGCCATCAAGAATGCAAGAGAAAGGGATAGGAGGACTCTGCTAAGAGCTATGAATGCAGGTAAGTCAATGAAGGCTGCGACTGAGAAAGAAGAGAAGGGAGACAAGGCTGGGGATTCGGCGCTCTCTGCTTCGCTAGAGGAACATGCAGAGGCAACTAGAGATGATGAGGGTGATTCGGATGGTGGTGATCATGATGAAGAAGAAGAAGAAGAAGAAGAGGATGAGGAGGCTGTTCGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2039

Protein Analysis

198

Amino Acids

22.47

Weight (kDa)

6.15

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2039 PF10217 6 - 96 1.6e-27 Uncharacterized conserved protein (DUF2039)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 401
AccBSI CCGCTC 1 cut(s) 298
AccII CGCG 1 cut(s) 213
AciI CCGC 3 cut(s) 95, 298, 318
AclI AACGTT 1 cut(s) 199
AclWI GGATC 1 cut(s) 308
AcoI YGGCCR 1 cut(s) 92
AcyI GRCGYC 3 cut(s) 54, 114, 267
AfaI GTAC 3 cut(s) 158, 167, 205
AfiI CCNNNNNNNGG 2 cut(s) 50, 322
AgsI TTSAA 1 cut(s) 329
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 3 cut(s) 238, 346, 401
AluI AGCT 3 cut(s) 238, 346, 401
Alw21I GWGCWC 2 cut(s) 264, 348
Alw26I GTCTC 1 cut(s) 447
AlwI GGATC 1 cut(s) 308
AoxI GGCC 3 cut(s) 82, 92, 354
ApeKI GCWGC 2 cut(s) 126, 428
ArsI GACNNNNNNTTYG 4 cut(s) 60, 92, 201, 233
Asp700I GAANNNNTTC 1 cut(s) 29
AspLEI GCGC 5 cut(s) 153, 215, 254, 275, 475
AsuHPI GGTGA 3 cut(s) 100, 536, 551
BanII GRGCYC 1 cut(s) 348
BarI GAAGNNNNNNTAC 2 cut(s) 140, 172
Bbv12I GWGCWC 2 cut(s) 264, 348
BbvI GCAGC 2 cut(s) 113, 415
BccI CCATC 2 cut(s) 365, 527
BceAI ACGGC 3 cut(s) 175, 200, 280
BciT130I CCWGG 1 cut(s) 350
BclI TGATCA 2 cut(s) 6, 541
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 2 cut(s) 488, 510
BfoI RGCGCY 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 401
BisI GCNGC 3 cut(s) 95, 127, 429
BlsI GCNGC 3 cut(s) 96, 128, 430
Bme1390I CCNGG 1 cut(s) 350
BmiI GGNNCC 2 cut(s) 89, 183
BmrFI CCNGG 1 cut(s) 350
BpmI CTGGAG 1 cut(s) 332
BsaHI GRCGYC 3 cut(s) 54, 114, 267
BsaJI CCNNGG 3 cut(s) 72, 255, 321
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 322
Bse118I RCCGGY 3 cut(s) 50, 84, 110
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 3 cut(s) 72, 255, 321
BseGI GGATG 2 cut(s) 538, 580
BseLI CCNNNNNNNGG 2 cut(s) 50, 322
BseMII CTCAG 1 cut(s) 426
BseRI GAGGAG 1 cut(s) 593
BseX3I CGGCCG 1 cut(s) 92
BseXI GCAGC 2 cut(s) 113, 415
BseYI CCCAGC 1 cut(s) 461
Bsh1236I CGCG 1 cut(s) 213
Bsh1285I CGRYCG 1 cut(s) 95
BshFI GGCC 3 cut(s) 84, 94, 356
BsiEI CGRYCG 1 cut(s) 95
BsiHKAI GWGCWC 2 cut(s) 264, 348
BsiSI CCGG 4 cut(s) 51, 85, 91, 111
BslFI GGGAC 1 cut(s) 211
BslI CCNNNNNNNGG 2 cut(s) 50, 322
BsmAI GTCTC 1 cut(s) 447
BsmFI GGGAC 1 cut(s) 211
BsmI GAATGC 2 cut(s) 370, 412
BsnI GGCC 3 cut(s) 84, 94, 356
Bsp1286I GDGCHC 2 cut(s) 264, 348
Bsp143I GATC 5 cut(s) 6, 105, 138, 300, 541
BspACI CCGC 3 cut(s) 95, 298, 318
BspANI GGCC 3 cut(s) 84, 94, 356
BspCNI CTCAG 1 cut(s) 427
BspFNI CGCG 1 cut(s) 213
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 2 cut(s) 89, 183
BspMI ACCTGC 1 cut(s) 401
BspPI GGATC 1 cut(s) 308
BsrBI CCGCTC 1 cut(s) 298
BsrFI RCCGGY 3 cut(s) 50, 84, 110
BssAI RCCGGY 3 cut(s) 50, 84, 110
BssECI CCNNGG 3 cut(s) 72, 255, 321
BssMI GATC 5 cut(s) 6, 105, 138, 300, 541
BssNI GRCGYC 3 cut(s) 54, 114, 267
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 1 cut(s) 14
Bst6I CTCTTC 2 cut(s) 438, 564
BstACI GRCGYC 3 cut(s) 54, 114, 267
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 2 cut(s) 395, 435
BstF5I GGATG 2 cut(s) 538, 580
BstFNI CGCG 1 cut(s) 213
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 5 cut(s) 153, 215, 254, 275, 475
BstKTI GATC 5 cut(s) 9, 108, 141, 303, 544
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 5 cut(s) 6, 105, 138, 300, 541
BstMCI CGRYCG 1 cut(s) 95
BstMWI GCNNNNNNNGC 6 cut(s) 126, 159, 244, 343, 407, 479
BstNI CCWGG 1 cut(s) 350
BstNSI RCATGY 1 cut(s) 500
BstSCI CCNGG 1 cut(s) 348
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 113, 415
BstZI CGGCCG 1 cut(s) 92
BsuRI GGCC 3 cut(s) 84, 94, 356
BtsCI GGATG 2 cut(s) 538, 580
BveI ACCTGC 1 cut(s) 401
Cac8I GCNNGC 1 cut(s) 52
CciI TCATGA 1 cut(s) 544
CfoI GCGC 5 cut(s) 153, 215, 254, 275, 475
Cfr10I RCCGGY 3 cut(s) 50, 84, 110
CseI GACGC 3 cut(s) 43, 103, 256
Csp6I GTAC 3 cut(s) 157, 166, 204
CviAII CATG 2 cut(s) 497, 545
CviQI GTAC 3 cut(s) 157, 166, 204
DdeI CTNAG 2 cut(s) 395, 435
DpnI GATC 5 cut(s) 8, 107, 140, 302, 543
DpnII GATC 5 cut(s) 6, 105, 138, 300, 541
EaeI YGGCCR 1 cut(s) 92
EagI CGGCCG 1 cut(s) 92
Eam1104I CTCTTC 2 cut(s) 438, 564
EarI CTCTTC 2 cut(s) 438, 564
Ecl136II GAGCTC 1 cut(s) 346
EclXI CGGCCG 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 348
Eco52I CGGCCG 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 2 cut(s) 500, 548
FaiI YATR 3 cut(s) 404, 498, 546
FaqI GGGAC 1 cut(s) 211
FatI CATG 2 cut(s) 496, 544
FauI CCCGC 1 cut(s) 325
FbaI TGATCA 2 cut(s) 6, 541
Fnu4HI GCNGC 3 cut(s) 95, 127, 429
FokI GGATG 2 cut(s) 545, 587
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 3 cut(s) 95, 127, 429
FspBI CTAG 2 cut(s) 488, 510
GlaI GCGC 5 cut(s) 152, 214, 253, 274, 474
GluI GCNGC 3 cut(s) 95, 127, 429
GsaI CCCAGC 1 cut(s) 465
GsuI CTGGAG 1 cut(s) 332
HaeII RGCGCY 1 cut(s) 476
HaeIII GGCC 3 cut(s) 84, 94, 356
HapII CCGG 4 cut(s) 51, 85, 91, 111
HgaI GACGC 3 cut(s) 43, 103, 256
HhaI GCGC 5 cut(s) 153, 215, 254, 275, 475
Hin1I GRCGYC 3 cut(s) 54, 114, 267
Hin1II CATG 2 cut(s) 500, 548
Hin6I GCGC 5 cut(s) 151, 213, 252, 273, 473
HinP1I GCGC 5 cut(s) 151, 213, 252, 273, 473
HinfI GANTC 3 cut(s) 388, 467, 527
HpaII CCGG 4 cut(s) 51, 85, 91, 111
HphI GGTGA 3 cut(s) 100, 536, 551
Hpy188I TCNGA 3 cut(s) 80, 103, 532
Hpy188III TCNNGA 3 cut(s) 307, 361, 545
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 3 cut(s) 334, 418, 442
HpyCH4III ACNGT 1 cut(s) 14
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 4 cut(s) 129, 368, 410, 500
HpyF10VI GCNNNNNNNGC 6 cut(s) 126, 159, 244, 343, 407, 479
HpyF3I CTNAG 2 cut(s) 395, 435
HpySE526I ACGT 1 cut(s) 199
Hsp92I GRCGYC 3 cut(s) 54, 114, 267
Hsp92II CATG 2 cut(s) 500, 548
HspAI GCGC 5 cut(s) 151, 213, 252, 273, 473
KroI GCCGGC 1 cut(s) 50
KroNI GCCGGC 1 cut(s) 52
Ksp22I TGATCA 2 cut(s) 6, 541
Kzo9I GATC 5 cut(s) 6, 105, 138, 300, 541
LmnI GCTCC 3 cut(s) 259, 343, 351
LpnPI CCDG 8 cut(s) 64, 98, 104, 124, 335, 362, 396, 447
Lsp1109I GCAGC 2 cut(s) 113, 415
MaeI CTAG 2 cut(s) 488, 510
MaeII ACGT 1 cut(s) 199
MalI GATC 5 cut(s) 8, 107, 140, 302, 543
MbiI CCGCTC 1 cut(s) 298
MboI GATC 5 cut(s) 6, 105, 138, 300, 541
MboII GAAGA 8 cut(s) 455, 563, 566, 569, 572, 575, 578, 581
MhlI GDGCHC 2 cut(s) 264, 348
MluCI AATT 1 cut(s) 592
MlyI GAGTC 1 cut(s) 382
MmeI TCCRAC 2 cut(s) 58, 81
MreI CGCCGGCG 1 cut(s) 50
MroNI GCCGGC 1 cut(s) 50
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 1 cut(s) 595
MspA1I CMGCKG 1 cut(s) 97
MspI CCGG 4 cut(s) 51, 85, 91, 111
MspR9I CCNGG 1 cut(s) 350
Mva1269I GAATGC 2 cut(s) 370, 412
MvaI CCWGG 1 cut(s) 350
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 6 cut(s) 126, 159, 244, 343, 407, 479
NaeI GCCGGC 1 cut(s) 52
NdeII GATC 5 cut(s) 6, 105, 138, 300, 541
NgoMIV GCCGGC 1 cut(s) 50
NlaIII CATG 2 cut(s) 500, 548
NlaIV GGNNCC 2 cut(s) 89, 183
NmeAIII GCCGAG 2 cut(s) 346, 358
NspI RCATGY 1 cut(s) 500
PagI TCATGA 1 cut(s) 544
PcsI WCGNNNNNNNCGW 2 cut(s) 217, 300
PctI GAATGC 2 cut(s) 370, 412
PdiI GCCGGC 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 467, 527
PfoI TCCNGGA 1 cut(s) 348
PkrI GCNGC 3 cut(s) 96, 128, 430
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Psp124BI GAGCTC 1 cut(s) 348
Psp1406I AACGTT 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 348
PspFI CCCAGC 1 cut(s) 461
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 89, 183
RsaI GTAC 3 cut(s) 158, 167, 205
RsaNI GTAC 3 cut(s) 157, 166, 204
SacI GAGCTC 1 cut(s) 348
SaqAI TTAA 1 cut(s) 595
SatI GCNGC 3 cut(s) 95, 127, 429
Sau3AI GATC 5 cut(s) 6, 105, 138, 300, 541
SchI GAGTC 1 cut(s) 382
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 2 cut(s) 264, 348
SetI ASST 7 cut(s) 78, 202, 240, 327, 348, 403, 415
SgrAI CRCCGGYG 2 cut(s) 50, 110
Sse9I AATT 1 cut(s) 592
SsiI CCGC 3 cut(s) 95, 298, 318
SspMI CTAG 2 cut(s) 488, 510
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 14
TaiI ACGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 141
TasI AATT 1 cut(s) 592
TatI WGTACW 1 cut(s) 165
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 2 cut(s) 467, 527
Tru1I TTAA 1 cut(s) 595
Tru9I TTAA 1 cut(s) 595
TseI GCWGC 2 cut(s) 126, 428
TspDTI ATGAA 3 cut(s) 419, 437, 564
TspGWI ACGGA 2 cut(s) 194, 209
XceI RCATGY 1 cut(s) 500
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 2 cut(s) 488, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.