Rmu_sc0001097.1_g000046

protein C9orf85 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001097.1
OG0006795
Physical Location & Seq
Reverse (-)
190266 .. 191146
881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001097.1_g000046.1.cds

Sequence Viewer

Length: 642 bp
atgaataacggtaggcacaagaacaagttcgcttggaaacccaacgccggcgtcaaaatcaacgaaaccgaggtcggaggccggttccggccgctttcggagatcaccggcgtctgccaacgctgcaaggaacagatcgagtggaagcgcaagtacggaaagtacaagcccctaacggaaccgaccaagtgccaacgttgtaccaaacgcgccgtccgccagtcccaccacaagctctgtcagccttgcgccaaggaacacggcgtctgcgcaaagtgttgttgtcgcaacgagcggatcgtcgggaaagaccccgccgaggttgaagccgagcagaaggagctccaggaggctatcaagaatgccagagagagggataggaggactctgctaagagctatgaatgcaggtaaattgatgaagactgcgactgagaaagaagagaagggagacaaggctggggattcggcactctctgcttcgctagaggaacatgcagaggcaactagagatgatgagggtgattctgatggtgatgatgatgatgatgatgaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaggatgaggagggtgttcgtaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2039

Protein Analysis

213

Amino Acids

24.46

Weight (kDa)

4.8

Isoelectric Point (pI)

70.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 271
Acc36I ACCTGC 1 cut(s) 398
AccBSI CCGCTC 1 cut(s) 295
AccII CGCG 1 cut(s) 210
AciI CCGC 4 cut(s) 92, 217, 295, 315
AclI AACGTT 1 cut(s) 196
AclWI GGATC 1 cut(s) 305
AcoI YGGCCR 1 cut(s) 89
AcyI GRCGYC 3 cut(s) 51, 111, 264
AfaI GTAC 3 cut(s) 155, 164, 202
AfiI CCNNNNNNNGG 3 cut(s) 47, 319, 372
AgsI TTSAA 1 cut(s) 326
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 3 cut(s) 235, 343, 398
AluI AGCT 3 cut(s) 235, 343, 398
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 444
AlwI GGATC 1 cut(s) 305
AoxI GGCC 2 cut(s) 79, 89
ApeKI GCWGC 1 cut(s) 123
ArsI GACNNNNNNTTYG 4 cut(s) 57, 89, 198, 230
Asp700I GAANNNNTTC 1 cut(s) 26
AspLEI GCGC 4 cut(s) 150, 212, 251, 272
AsuHPI GGTGA 3 cut(s) 97, 533, 545
BanII GRGCYC 1 cut(s) 345
BarI GAAGNNNNNNTAC 2 cut(s) 137, 169
BbsI GAAGAC 1 cut(s) 428
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 110
BccI CCATC 1 cut(s) 524
BceAI ACGGC 2 cut(s) 197, 277
BciT130I CCWGG 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 444
BfaI CTAG 2 cut(s) 485, 507
BfuAI ACCTGC 1 cut(s) 398
BisI GCNGC 2 cut(s) 92, 124
BlsI GCNGC 2 cut(s) 93, 125
Bme1390I CCNGG 1 cut(s) 347
BmiI GGNNCC 2 cut(s) 86, 180
BmrFI CCNGG 1 cut(s) 347
BpiI GAAGAC 1 cut(s) 428
BpmI CTGGAG 1 cut(s) 329
BsaHI GRCGYC 3 cut(s) 51, 111, 264
BsaJI CCNNGG 3 cut(s) 69, 252, 318
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 319, 372
Bse118I RCCGGY 3 cut(s) 47, 81, 107
Bse1I ACTGG 1 cut(s) 220
BseBI CCWGG 1 cut(s) 347
BseDI CCNNGG 3 cut(s) 69, 252, 318
BseGI GGATG 1 cut(s) 625
BseLI CCNNNNNNNGG 3 cut(s) 47, 319, 372
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 638
BseX3I CGGCCG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 110
BseYI CCCAGC 1 cut(s) 458
Bsh1236I CGCG 1 cut(s) 210
Bsh1285I CGRYCG 1 cut(s) 92
BshFI GGCC 2 cut(s) 81, 91
BsiEI CGRYCG 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 4 cut(s) 48, 82, 88, 108
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 3 cut(s) 47, 319, 372
BsmAI GTCTC 1 cut(s) 444
BsmFI GGGAC 1 cut(s) 208
BsmI GAATGC 2 cut(s) 367, 409
BsnI GGCC 2 cut(s) 81, 91
Bsp1286I GDGCHC 1 cut(s) 345
Bsp143I GATC 3 cut(s) 102, 135, 297
BspACI CCGC 4 cut(s) 92, 217, 295, 315
BspANI GGCC 2 cut(s) 81, 91
BspCNI CTCAG 1 cut(s) 424
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 86, 180
BspMI ACCTGC 1 cut(s) 398
BspPI GGATC 1 cut(s) 305
BsrBI CCGCTC 1 cut(s) 295
BsrFI RCCGGY 3 cut(s) 47, 81, 107
BsrI ACTGG 1 cut(s) 220
BssAI RCCGGY 3 cut(s) 47, 81, 107
BssECI CCNNGG 3 cut(s) 69, 252, 318
BssMI GATC 3 cut(s) 102, 135, 297
BssNI GRCGYC 3 cut(s) 51, 111, 264
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 1 cut(s) 11
Bst6I CTCTTC 2 cut(s) 435, 609
BstACI GRCGYC 3 cut(s) 51, 111, 264
BstAPI GCANNNNNTGC 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 392, 432
BstF5I GGATG 1 cut(s) 625
BstFNI CGCG 1 cut(s) 210
BstHHI GCGC 4 cut(s) 150, 212, 251, 272
BstKTI GATC 3 cut(s) 105, 138, 300
BstMAI GTCTC 1 cut(s) 444
BstMBI GATC 3 cut(s) 102, 135, 297
BstMCI CGRYCG 1 cut(s) 92
BstMWI GCNNNNNNNGC 6 cut(s) 123, 216, 241, 340, 404, 476
BstNI CCWGG 1 cut(s) 347
BstNSI RCATGY 1 cut(s) 497
BstSCI CCNGG 1 cut(s) 345
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 110
BstV2I GAAGAC 1 cut(s) 428
BstZI CGGCCG 1 cut(s) 89
BsuRI GGCC 2 cut(s) 81, 91
BtsCI GGATG 1 cut(s) 625
BveI ACCTGC 1 cut(s) 398
Cac8I GCNNGC 1 cut(s) 49
CfoI GCGC 4 cut(s) 150, 212, 251, 272
Cfr10I RCCGGY 3 cut(s) 47, 81, 107
CseI GACGC 3 cut(s) 40, 100, 253
Csp6I GTAC 3 cut(s) 154, 163, 201
CviAII CATG 1 cut(s) 494
CviQI GTAC 3 cut(s) 154, 163, 201
DdeI CTNAG 2 cut(s) 392, 432
DpnI GATC 3 cut(s) 104, 137, 299
DpnII GATC 3 cut(s) 102, 135, 297
EaeI YGGCCR 1 cut(s) 89
EagI CGGCCG 1 cut(s) 89
Eam1104I CTCTTC 2 cut(s) 435, 609
EarI CTCTTC 2 cut(s) 435, 609
EciI GGCGGA 1 cut(s) 206
Ecl136II GAGCTC 1 cut(s) 343
EclXI CGGCCG 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 345
Eco52I CGGCCG 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 1 cut(s) 497
FaiI YATR 2 cut(s) 401, 495
FaqI GGGAC 1 cut(s) 208
FatI CATG 1 cut(s) 493
FauI CCCGC 1 cut(s) 322
Fnu4HI GCNGC 2 cut(s) 92, 124
FokI GGATG 1 cut(s) 632
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 2 cut(s) 92, 124
FspBI CTAG 2 cut(s) 485, 507
FspI TGCGCA 1 cut(s) 271
GlaI GCGC 4 cut(s) 149, 211, 250, 271
GluI GCNGC 2 cut(s) 92, 124
GsaI CCCAGC 1 cut(s) 462
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 2 cut(s) 81, 91
HapII CCGG 4 cut(s) 48, 82, 88, 108
HgaI GACGC 3 cut(s) 40, 100, 253
HhaI GCGC 4 cut(s) 150, 212, 251, 272
Hin1I GRCGYC 3 cut(s) 51, 111, 264
Hin1II CATG 1 cut(s) 497
Hin6I GCGC 4 cut(s) 148, 210, 249, 270
HinP1I GCGC 4 cut(s) 148, 210, 249, 270
HinfI GANTC 3 cut(s) 385, 464, 524
HpaII CCGG 4 cut(s) 48, 82, 88, 108
HphI GGTGA 3 cut(s) 97, 533, 545
Hpy188I TCNGA 3 cut(s) 77, 100, 529
Hpy188III TCNNGA 2 cut(s) 304, 358
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 331, 439
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 3 cut(s) 126, 407, 497
HpyF10VI GCNNNNNNNGC 6 cut(s) 123, 216, 241, 340, 404, 476
HpyF3I CTNAG 2 cut(s) 392, 432
HpySE526I ACGT 1 cut(s) 196
Hsp92I GRCGYC 3 cut(s) 51, 111, 264
Hsp92II CATG 1 cut(s) 497
HspAI GCGC 4 cut(s) 148, 210, 249, 270
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
Kzo9I GATC 3 cut(s) 102, 135, 297
LmnI GCTCC 2 cut(s) 340, 348
Lsp1109I GCAGC 1 cut(s) 110
MaeI CTAG 2 cut(s) 485, 507
MaeII ACGT 1 cut(s) 196
MalI GATC 3 cut(s) 104, 137, 299
MbiI CCGCTC 1 cut(s) 295
MboI GATC 3 cut(s) 102, 135, 297
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 2 cut(s) 413, 637
MlyI GAGTC 1 cut(s) 379
MmeI TCCRAC 1 cut(s) 55
MreI CGCCGGCG 1 cut(s) 47
MroNI GCCGGC 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 1 cut(s) 640
MspI CCGG 4 cut(s) 48, 82, 88, 108
MspR9I CCNGG 1 cut(s) 347
Mva1269I GAATGC 2 cut(s) 367, 409
MvaI CCWGG 1 cut(s) 347
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 6 cut(s) 123, 216, 241, 340, 404, 476
NaeI GCCGGC 1 cut(s) 49
NdeII GATC 3 cut(s) 102, 135, 297
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 1 cut(s) 497
NlaIV GGNNCC 2 cut(s) 86, 180
NmeAIII GCCGAG 2 cut(s) 343, 355
NsbI TGCGCA 1 cut(s) 271
NspI RCATGY 1 cut(s) 497
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PctI GAATGC 2 cut(s) 367, 409
PdiI GCCGGC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 464, 524
PfoI TCCNGGA 1 cut(s) 345
PkrI GCNGC 2 cut(s) 93, 125
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
Psp124BI GAGCTC 1 cut(s) 345
Psp1406I AACGTT 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 345
PspFI CCCAGC 1 cut(s) 458
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 2 cut(s) 86, 180
RsaI GTAC 3 cut(s) 155, 164, 202
RsaNI GTAC 3 cut(s) 154, 163, 201
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 1 cut(s) 640
SatI GCNGC 2 cut(s) 92, 124
Sau3AI GATC 3 cut(s) 102, 135, 297
SchI GAGTC 1 cut(s) 379
ScrFI CCNGG 1 cut(s) 347
SduI GDGCHC 1 cut(s) 345
SetI ASST 7 cut(s) 75, 199, 237, 324, 345, 400, 412
SgrAI CRCCGGYG 2 cut(s) 47, 107
Sse9I AATT 2 cut(s) 413, 637
SsiI CCGC 4 cut(s) 92, 217, 295, 315
SspMI CTAG 2 cut(s) 485, 507
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 138
TasI AATT 2 cut(s) 413, 637
TatI WGTACW 1 cut(s) 162
TauI GCSGC 1 cut(s) 94
TfiI GAWTC 2 cut(s) 464, 524
Tru1I TTAA 1 cut(s) 640
Tru9I TTAA 1 cut(s) 640
TseI GCWGC 1 cut(s) 123
TspDTI ATGAA 4 cut(s) 17, 416, 434, 567
TspGWI ACGGA 2 cut(s) 171, 191
XceI RCATGY 1 cut(s) 497
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 2 cut(s) 485, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.