AT3G02500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006085
Physical Location & Seq
Forward (+)
519211 .. 521793
2583 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02500.3

Sequence Viewer

Length: 882 bp
ATGGTTTTGCGTGGCGAAGAGCTTGAGTTTAATCTAAGAGAATGGGCACGACAAGGCCATTTAACTCGCGAAGATCAAAGTTCTAGAAGGTTCTCTGCCTCTTGTATCCGAAGCTTCCGAGAAGACCACAAGTCTTGTACAACAAACGTCACCATCTCTAGTACTGCCTCTTCTCCGGGTTACTCCCTCAAAGATGAGATCGATCCATCAAATTATTCCTTCAGTAGTGCACTCAAGGCATTGCAAGCAAAATCAGTGTACAAGAAGAATTGGGATTGGTTGAAACCAGAAGGAGTTGAGCTAAACTCGAAATGGAACGAAGCAGAGAAGTATATATGCAATCCTTTATCTGGTGAAGTTCCTTTGGAGTGTTTGTCTTCTAAAACCCTAAATTCAAGATCTTTCAGAAACTTATCCACCAAGCATGCTCCACTCATGATTTTACCTTCTAATTATAATCTCAACATTCCAAGAACGGTTAATCCTAAAGTTAGAATCATTCATGAGGATCCTAGATCTCCCGATCCTGTTCTAATTCAAGATAAGAAAGTTGTGGGGTCTAAACGAGATGTCGTGAGTGCACAGGGAAATGTTAGTGCAGCAAAGACGACGCCGATCATGGAGAGATTAACGAAAAGACAGGTGGGAGCTGATGATTCGCCTGTTGAGTATGCACTAAAGTTGAAAGCTCAACAAGAGGATGTGAAGTTAGAAGAAAATGAGCAAAATATGATGACAAAAGAAATTCAAGAAGAAAAGAAAGAGAAGAAGAAGAGAAGAGGAAGTGGGTTTTCCTCATGGATAAGGAAAATGCAAAGACAACCAAGAAAATCCAAATGCATATTTCTCATTTGTCTTCCTCATCTTATCAAAGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

33.49

Weight (kDa)

9.54

Isoelectric Point (pI)

56.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 456
AccII CGCG 1 cut(s) 69
AclWI GGATC 4 cut(s) 197, 503, 516, 518
AcsI RAATTY 2 cut(s) 391, 744
AcuI CTGAAG 1 cut(s) 205
AcyI GRCGYC 1 cut(s) 611
AfaI GTAC 3 cut(s) 139, 163, 260
AfiI CCNNNNNNNGG 1 cut(s) 350
AgsI TTSAA 5 cut(s) 283, 396, 539, 685, 749
AhdI GACNNNNNGTC 1 cut(s) 130
AloI GAACNNNNNNTCC 2 cut(s) 466, 498
AluBI AGCT 6 cut(s) 22, 114, 301, 650, 689, 875
AluI AGCT 6 cut(s) 22, 114, 301, 650, 689, 875
Alw21I GWGCWC 2 cut(s) 232, 583
Alw44I GTGCAC 2 cut(s) 228, 579
AlwI GGATC 4 cut(s) 197, 503, 516, 518
AoxI GGCC 1 cut(s) 55
ApaLI GTGCAC 2 cut(s) 228, 579
ApeKI GCWGC 1 cut(s) 599
ApoI RAATTY 2 cut(s) 391, 744
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 2 cut(s) 142, 365
BaeGI GKGCMC 3 cut(s) 49, 232, 583
BamHI GGATCC 1 cut(s) 508
BarI GAAGNNNNNNTAC 2 cut(s) 154, 186
BbsI GAAGAC 3 cut(s) 129, 369, 848
Bbv12I GWGCWC 2 cut(s) 232, 583
BbvI GCAGC 1 cut(s) 611
BccI CCATC 2 cut(s) 161, 214
BciVI GTATCC 1 cut(s) 116
BcnI CCSGG 1 cut(s) 177
BfaI CTAG 3 cut(s) 84, 159, 513
BfuI GTATCC 1 cut(s) 116
BglII AGATCT 2 cut(s) 398, 515
BisI GCNGC 1 cut(s) 600
BlsI GCNGC 1 cut(s) 601
BmcAI AGTACT 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 177
BmeRI GACNNNNNGTC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 510
BmrFI CCNGG 1 cut(s) 177
BpiI GAAGAC 3 cut(s) 129, 369, 848
BplI GAGNNNNNCTC 2 cut(s) 290, 322
BpuEI CTTGAG 2 cut(s) 44, 218
BpuMI CCSGG 1 cut(s) 177
Bsa29I ATCGAT 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 611
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 239
BseCI ATCGAT 1 cut(s) 201
BseGI GGATG 1 cut(s) 706
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMI GCAATG 1 cut(s) 239
BseSI GKGCMC 3 cut(s) 49, 232, 583
BseXI GCAGC 1 cut(s) 611
BsgI GTGCAG 1 cut(s) 618
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 57
BshVI ATCGAT 1 cut(s) 201
BsiHKAI GWGCWC 2 cut(s) 232, 583
BsiSI CCGG 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 350
BsnI GGCC 1 cut(s) 57
Bsp1286I GDGCHC 3 cut(s) 49, 232, 583
Bsp1407I TGTACA 2 cut(s) 137, 258
Bsp143I GATC 8 cut(s) 73, 198, 202, 398, 508, 515, 523, 615
Bsp68I TCGCGA 1 cut(s) 69
BspANI GGCC 1 cut(s) 57
BspDI ATCGAT 1 cut(s) 201
BspFNI CGCG 1 cut(s) 69
BspHI TCATGA 2 cut(s) 435, 502
BspLI GGNNCC 1 cut(s) 510
BspPI GGATC 4 cut(s) 197, 503, 516, 518
BspQI GCTCTTC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 239
BsrGI TGTACA 2 cut(s) 137, 258
BssMI GATC 8 cut(s) 73, 198, 202, 398, 508, 515, 523, 615
BssNI GRCGYC 1 cut(s) 611
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 4 cut(s) 12, 175, 767, 772
BstACI GRCGYC 1 cut(s) 611
BstAUI TGTACA 2 cut(s) 137, 258
BstC8I GCNNGC 2 cut(s) 246, 426
BstDEI CTNAG 1 cut(s) 35
BstF5I GGATG 1 cut(s) 706
BstFNI CGCG 1 cut(s) 69
BstKTI GATC 8 cut(s) 76, 201, 205, 401, 511, 518, 526, 618
BstMBI GATC 8 cut(s) 73, 198, 202, 398, 508, 515, 523, 615
BstMWI GCNNNNNNNGC 2 cut(s) 236, 245
BstNSI RCATGY 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 175
BstSLI GKGCMC 3 cut(s) 49, 232, 583
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 611
BstV2I GAAGAC 3 cut(s) 129, 369, 848
BstX2I RGATCY 3 cut(s) 398, 508, 515
BstYI RGATCY 3 cut(s) 398, 508, 515
Bsu15I ATCGAT 1 cut(s) 201
BsuI GTATCC 1 cut(s) 116
BsuRI GGCC 1 cut(s) 57
BsuTUI ATCGAT 1 cut(s) 201
BtsCI GGATG 1 cut(s) 706
BtsIMutI CAGTG 1 cut(s) 261
BtuMI TCGCGA 1 cut(s) 69
Cac8I GCNNGC 2 cut(s) 246, 426
CciI TCATGA 2 cut(s) 435, 502
ClaI ATCGAT 1 cut(s) 201
CseI GACGC 1 cut(s) 619
Csp6I GTAC 3 cut(s) 138, 162, 259
CspCI CAANNNNNGTGG 2 cut(s) 116, 151
CviAII CATG 5 cut(s) 425, 436, 503, 619, 798
CviJI RGCY 7 cut(s) 22, 57, 114, 301, 650, 689, 875
CviKI_1 RGCY 7 cut(s) 22, 57, 114, 301, 650, 689, 875
CviQI GTAC 3 cut(s) 138, 162, 259
DdeI CTNAG 1 cut(s) 35
DpnI GATC 8 cut(s) 75, 200, 204, 400, 510, 517, 525, 617
DpnII GATC 8 cut(s) 73, 198, 202, 398, 508, 515, 523, 615
DriI GACNNNNNGTC 1 cut(s) 130
Eam1104I CTCTTC 4 cut(s) 12, 175, 767, 772
Eam1105I GACNNNNNGTC 1 cut(s) 130
EarI CTCTTC 4 cut(s) 12, 175, 767, 772
Eco57I CTGAAG 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 842
FaeI CATG 5 cut(s) 428, 439, 506, 622, 801
FatI CATG 5 cut(s) 424, 435, 502, 618, 797
Fnu4HI GCNGC 1 cut(s) 600
FokI GGATG 1 cut(s) 713
Fsp4HI GCNGC 1 cut(s) 600
FspBI CTAG 3 cut(s) 84, 159, 513
GluI GCNGC 1 cut(s) 600
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 176
HgaI GACGC 1 cut(s) 619
Hin1I GRCGYC 1 cut(s) 611
Hin1II CATG 5 cut(s) 428, 439, 506, 622, 801
HindIII AAGCTT 2 cut(s) 112, 873
HinfI GANTC 2 cut(s) 495, 656
HpaII CCGG 1 cut(s) 176
HphI GGTGA 2 cut(s) 142, 365
Hpy166II GTNNAC 3 cut(s) 230, 259, 581
Hpy188I TCNGA 3 cut(s) 110, 119, 407
Hpy8I GTNNAC 3 cut(s) 230, 259, 581
Hpy99I CGWCG 1 cut(s) 613
HpyAV CCTTC 4 cut(s) 81, 229, 284, 456
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 8 cut(s) 230, 244, 339, 581, 599, 674, 814, 840
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 245
HpyF3I CTNAG 1 cut(s) 35
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 611
Hsp92II CATG 5 cut(s) 428, 439, 506, 622, 801
Kzo9I GATC 8 cut(s) 73, 198, 202, 398, 508, 515, 523, 615
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 2 cut(s) 433, 647
LpnPI CCDG 7 cut(s) 189, 300, 336, 540, 569, 626, 675
Lsp1109I GCAGC 1 cut(s) 611
MaeI CTAG 3 cut(s) 84, 159, 513
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 2 cut(s) 148, 179
MalI GATC 8 cut(s) 75, 200, 204, 400, 510, 517, 525, 617
MboI GATC 8 cut(s) 73, 198, 202, 398, 508, 515, 523, 615
MflI RGATCY 3 cut(s) 398, 508, 515
MhlI GDGCHC 3 cut(s) 49, 232, 583
MluCI AATT 6 cut(s) 211, 268, 391, 451, 534, 744
MnlI CCTC 8 cut(s) 109, 178, 197, 499, 691, 773, 805, 870
Mph1103I ATGCAT 1 cut(s) 842
MseI TTAA 4 cut(s) 30, 62, 480, 629
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 1 cut(s) 177
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 2 cut(s) 236, 245
NciI CCSGG 1 cut(s) 177
NdeII GATC 8 cut(s) 73, 198, 202, 398, 508, 515, 523, 615
NlaIII CATG 5 cut(s) 428, 439, 506, 622, 801
NlaIV GGNNCC 1 cut(s) 510
NmuCI GTSAC 1 cut(s) 148
NruI TCGCGA 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 842
NspI RCATGY 1 cut(s) 428
PaeI GCATGC 1 cut(s) 428
PagI TCATGA 2 cut(s) 435, 502
PciSI GCTCTTC 1 cut(s) 12
PfeI GAWTC 2 cut(s) 495, 656
PkrI GCNGC 1 cut(s) 601
PsiI TTATAA 1 cut(s) 456
PspN4I GGNNCC 1 cut(s) 510
PsuI RGATCY 3 cut(s) 398, 508, 515
RruI TCGCGA 1 cut(s) 69
RsaI GTAC 3 cut(s) 139, 163, 260
RsaNI GTAC 3 cut(s) 138, 162, 259
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 4 cut(s) 30, 62, 480, 629
SatI GCNGC 1 cut(s) 600
Sau3AI GATC 8 cut(s) 73, 198, 202, 398, 508, 515, 523, 615
ScaI AGTACT 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 177
SduI GDGCHC 3 cut(s) 49, 232, 583
SmlI CTYRAG 2 cut(s) 23, 233
SmoI CTYRAG 2 cut(s) 23, 233
SphI GCATGC 1 cut(s) 428
Sse9I AATT 6 cut(s) 211, 268, 391, 451, 534, 744
SspMI CTAG 3 cut(s) 84, 159, 513
StyD4I CCNGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 478
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 201, 308
TasI AATT 6 cut(s) 211, 268, 391, 451, 534, 744
TatI WGTACW 3 cut(s) 137, 161, 258
TfiI GAWTC 2 cut(s) 495, 656
Tru1I TTAA 4 cut(s) 30, 62, 480, 629
Tru9I TTAA 4 cut(s) 30, 62, 480, 629
TscAI CASTG 1 cut(s) 261
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 599
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 491
TspRI CASTG 1 cut(s) 261
VneI GTGCAC 2 cut(s) 228, 579
XapI RAATTY 2 cut(s) 391, 744
XbaI TCTAGA 1 cut(s) 83
XceI RCATGY 1 cut(s) 428
XspI CTAG 3 cut(s) 84, 159, 513
ZrmI AGTACT 1 cut(s) 163
Zsp2I ATGCAT 1 cut(s) 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.