Rh2BG579400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0006085
Physical Location & Seq
Reverse (-)
79665706 .. 79671137
5432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG579400.1

Sequence Viewer

Length: 834 bp
ATGTGGACAAGACTGAATGCTGAGCTCTTGAAGGTAATATGGAACTGGGACCAATTTGTTGCCTGCTATTGCTTTCCAAATACTGAAGAGTTGCCTCGTGTGGAGCGTCTCTGTTCCAAGGTGGTCAACTGGAGAGCTGAACGTGCATTTGACCAAAGGGGACAAGACGAACCCGAGTTCAGCTTGAGAGATTGGGCTCTCAAGGCTAGAGGAATCAGCCGCGAAAACACGAATTCCAGAAGGTTCTCAGCATCCTACATTAGAAGCTTTAGAGAAGACACAAGGTCTTTCAGATCAAACATTACCATCTCCAGCACTGCTTCTTCTCCTGGCTATGCCTTAAGAGATGAAATTGACCCTGCAACTTACTCATTCACCACAGCCCTCAAAGCATTGCAAGCAAGGTCTGCCTACAATAGTTGGGAGGCTTTATCCCCAGATGGGTTTGCTTTACATTCAAAGTGGAATGAAGCAGAGAAATACATATGCAACCCTCTTTCAGGACAAGTCCCAATGGAGTGTTTATCTGCAAAAACACTTAGTGGAAGATCGTTTCGAAACATAACGAATCGTATCACAATGTCTGCACCTCTTGTTTACTCTTCTCACACTAGGCCAATCCATACCACCAAGCCTTCTTATTCAACCAAAGAAGACTTGGCTCGTCAATTCCCAATTCCAGAGAGACCCATTGCAGGGGTCTATGAGATTCTGTGGCTTGAGAATTGCTGCAGGGTCACTGTGTTCGTCTGTGATCAAGAGAAGAGAAGAATGAATCTTGTAATGCGGTCTTTAGTGGTTGTTTTGTGTCGGTTTTCTTCTGTTGTAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

32.0

Weight (kDa)

9.08

Isoelectric Point (pI)

53.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 222
AciI CCGC 2 cut(s) 220, 787
AcsI RAATTY 1 cut(s) 232
AcuI CTGAAG 1 cut(s) 105
AdeI CACNNNGTG 1 cut(s) 542
AfiI CCNNNNNNNGG 4 cut(s) 441, 500, 695, 696
AflII CTTAAG 1 cut(s) 340
AgsI TTSAA 3 cut(s) 31, 459, 645
AhdI GACNNNNNGTC 1 cut(s) 283
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 4 cut(s) 25, 137, 183, 267
AluI AGCT 4 cut(s) 25, 137, 183, 267
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 2 cut(s) 113, 679
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 1 cut(s) 614
ApeKI GCWGC 1 cut(s) 729
ApoI RAATTY 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 367
AsuII TTCGAA 1 cut(s) 556
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 1 cut(s) 49
BanII GRGCYC 2 cut(s) 27, 199
BauI CACGAG 1 cut(s) 96
BbsI GAAGAC 2 cut(s) 282, 660
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 716
BccI CCATC 2 cut(s) 314, 434
BciT130I CCWGG 1 cut(s) 330
BclI TGATCA 1 cut(s) 754
BcoDI GTCTC 2 cut(s) 113, 679
BfaI CTAG 2 cut(s) 207, 612
BfmI CTRYAG 1 cut(s) 730
BfrI CTTAAG 1 cut(s) 340
BisI GCNGC 2 cut(s) 220, 730
BlpI GCTNAGC 1 cut(s) 21
BlsI GCNGC 2 cut(s) 221, 731
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 1 cut(s) 49
BmeRI GACNNNNNGTC 1 cut(s) 283
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 50
BmrFI CCNGG 1 cut(s) 330
BmrI ACTGGG 1 cut(s) 55
BmsI GCATC 1 cut(s) 260
BmuI ACTGGG 1 cut(s) 55
BpiI GAAGAC 2 cut(s) 282, 660
BpmI CTGGAG 2 cut(s) 151, 295
Bpu1102I GCTNAGC 1 cut(s) 21
Bpu14I TTCGAA 1 cut(s) 556
BpuEI CTTGAG 3 cut(s) 185, 205, 740
BsaI GGTCTC 1 cut(s) 679
BsaJI CCNNGG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 4 cut(s) 441, 500, 695, 696
Bse1I ACTGG 2 cut(s) 50, 134
Bse3DI GCAATG 2 cut(s) 392, 690
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 4 cut(s) 441, 500, 695, 696
BseMI GCAATG 2 cut(s) 392, 690
BseMII CTCAG 2 cut(s) 12, 261
BseNI ACTGG 2 cut(s) 50, 134
BseXI GCAGC 1 cut(s) 716
BsgI GTGCAG 1 cut(s) 570
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 1 cut(s) 616
BsiHKAI GWGCWC 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 173
BslFI GGGAC 3 cut(s) 62, 174, 494
BslI CCNNNNNNNGG 4 cut(s) 441, 500, 695, 696
BsmAI GTCTC 2 cut(s) 113, 679
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 3 cut(s) 62, 174, 494
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 1 cut(s) 616
Bso31I GGTCTC 1 cut(s) 679
BsoBI CYCGRG 1 cut(s) 173
Bsp119I TTCGAA 1 cut(s) 556
Bsp1286I GDGCHC 2 cut(s) 27, 199
Bsp143I GATC 3 cut(s) 293, 548, 754
Bsp1720I GCTNAGC 1 cut(s) 21
BspACI CCGC 2 cut(s) 220, 787
BspANI GGCC 1 cut(s) 616
BspCNI CTCAG 2 cut(s) 13, 260
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 50
BspMAI CTGCAG 1 cut(s) 734
BspT104I TTCGAA 1 cut(s) 556
BspTI CTTAAG 1 cut(s) 340
BspTNI GGTCTC 1 cut(s) 679
BsrDI GCAATG 2 cut(s) 392, 690
BsrI ACTGG 2 cut(s) 50, 134
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 3 cut(s) 293, 548, 754
BssSI CACGAG 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 117
Bst2BI CACGAG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 742
Bst6I CTCTTC 3 cut(s) 81, 607, 758
BstAFI CTTAAG 1 cut(s) 340
BstAPI GCANNNNNTGC 1 cut(s) 407
BstBI TTCGAA 1 cut(s) 556
BstC8I GCNNGC 2 cut(s) 64, 399
BstDEI CTNAG 3 cut(s) 21, 247, 539
BstENI CCTNNNNNAGG 1 cut(s) 498
BstF5I GGATG 1 cut(s) 251
BstFNI CGCG 1 cut(s) 222
BstKTI GATC 3 cut(s) 296, 551, 757
BstMAI GTCTC 2 cut(s) 113, 679
BstMBI GATC 3 cut(s) 293, 548, 754
BstMWI GCNNNNNNNGC 5 cut(s) 143, 203, 389, 398, 407
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 328
BstSFI CTRYAG 1 cut(s) 730
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 716
BstV2I GAAGAC 2 cut(s) 282, 660
BsuRI GGCC 1 cut(s) 616
BtsCI GGATG 1 cut(s) 251
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 2 cut(s) 315, 738
Cac8I GCNNGC 2 cut(s) 64, 399
Cfr13I GGNCC 1 cut(s) 49
CseI GACGC 1 cut(s) 95
DdeI CTNAG 3 cut(s) 21, 247, 539
DpnI GATC 3 cut(s) 295, 550, 756
DpnII GATC 3 cut(s) 293, 548, 754
DraIII CACNNNGTG 1 cut(s) 542
DriI GACNNNNNGTC 1 cut(s) 283
Eam1104I CTCTTC 3 cut(s) 81, 607, 758
Eam1105I GACNNNNNGTC 1 cut(s) 283
EarI CTCTTC 3 cut(s) 81, 607, 758
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 117
Eco24I GRGCYC 2 cut(s) 27, 199
Eco31I GGTCTC 1 cut(s) 679
Eco47I GGWCC 1 cut(s) 49
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 25
EcoNI CCTNNNNNAGG 1 cut(s) 498
EcoRI GAATTC 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 117
EcoT38I GRGCYC 2 cut(s) 27, 199
ErhI CCWWGG 1 cut(s) 117
Esp3I CGTCTC 1 cut(s) 113
FaiI YATR 7 cut(s) 40, 336, 485, 487, 563, 624, 705
FaqI GGGAC 3 cut(s) 62, 174, 494
FauNDI CATATG 1 cut(s) 485
FbaI TGATCA 1 cut(s) 754
Fnu4HI GCNGC 2 cut(s) 220, 730
FokI GGATG 1 cut(s) 238
FriOI GRGCYC 2 cut(s) 27, 199
Fsp4HI GCNGC 2 cut(s) 220, 730
FspBI CTAG 2 cut(s) 207, 612
GluI GCNGC 2 cut(s) 220, 730
GsuI CTGGAG 2 cut(s) 151, 295
HaeIII GGCC 1 cut(s) 616
HgaI GACGC 1 cut(s) 95
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 4 cut(s) 213, 568, 709, 775
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 3 cut(s) 6, 127, 598
Hpy188I TCNGA 1 cut(s) 293
Hpy188III TCNNGA 5 cut(s) 28, 237, 501, 680, 758
Hpy8I GTNNAC 3 cut(s) 6, 127, 598
HpyAV CCTTC 3 cut(s) 25, 234, 645
HpyCH4III ACNGT 1 cut(s) 742
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 8 cut(s) 146, 362, 397, 489, 530, 587, 695, 732
HpyF10VI GCNNNNNNNGC 5 cut(s) 143, 203, 389, 398, 407
HpyF3I CTNAG 3 cut(s) 21, 247, 539
HpySE526I ACGT 1 cut(s) 142
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 3 cut(s) 293, 548, 754
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 1 cut(s) 716
LweI GCATC 1 cut(s) 260
MaeI CTAG 2 cut(s) 207, 612
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 1 cut(s) 736
MalI GATC 3 cut(s) 295, 550, 756
MboI GATC 3 cut(s) 293, 548, 754
MboII GAAGA 9 cut(s) 98, 287, 315, 558, 594, 665, 775, 780, 810
MhlI GDGCHC 2 cut(s) 27, 199
MluCI AATT 6 cut(s) 53, 232, 351, 668, 675, 724
MnlI CCTC 6 cut(s) 105, 203, 395, 418, 504, 600
MseI TTAA 1 cut(s) 341
MspCI CTTAAG 1 cut(s) 340
MspR9I CCNGG 1 cut(s) 330
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 1 cut(s) 330
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 5 cut(s) 143, 203, 389, 398, 407
NdeI CATATG 1 cut(s) 485
NdeII GATC 3 cut(s) 293, 548, 754
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 736
NspV TTCGAA 1 cut(s) 556
PcsI WCGNNNNNNNCGW 1 cut(s) 103
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 4 cut(s) 213, 568, 709, 775
PkrI GCNGC 2 cut(s) 221, 731
Psp124BI GAGCTC 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 50
PspPI GGNCC 1 cut(s) 49
PstI CTGCAG 1 cut(s) 734
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 2 cut(s) 220, 730
Sau3AI GATC 3 cut(s) 293, 548, 754
Sau96I GGNCC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 330
SduI GDGCHC 2 cut(s) 27, 199
SfaNI GCATC 1 cut(s) 260
SfcI CTRYAG 1 cut(s) 730
SfuI TTCGAA 1 cut(s) 556
SinI GGWCC 1 cut(s) 49
SmlI CTYRAG 4 cut(s) 184, 200, 340, 719
SmoI CTYRAG 4 cut(s) 184, 200, 340, 719
Sse9I AATT 6 cut(s) 53, 232, 351, 668, 675, 724
SsiI CCGC 2 cut(s) 220, 787
SspMI CTAG 2 cut(s) 207, 612
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 328
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 742
TaiI ACGT 1 cut(s) 145
TaqI TCGA 1 cut(s) 556
TasI AATT 6 cut(s) 53, 232, 351, 668, 675, 724
TauI GCSGC 1 cut(s) 222
TfiI GAWTC 4 cut(s) 213, 568, 709, 775
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 2 cut(s) 322, 745
TseFI GTSAC 1 cut(s) 736
TseI GCWGC 1 cut(s) 729
Tsp45I GTSAC 1 cut(s) 736
TspDTI ATGAA 3 cut(s) 363, 483, 788
TspRI CASTG 2 cut(s) 322, 745
Vha464I CTTAAG 1 cut(s) 340
VpaK11BI GGWCC 1 cut(s) 49
XagI CCTNNNNNAGG 1 cut(s) 498
XapI RAATTY 1 cut(s) 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 655
XspI CTAG 2 cut(s) 207, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.