RchiOBHm_Chr2g0163131

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006085
Physical Location & Seq
Reverse (-)
78762019 .. 78764920
2902 bp
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UTR
Exon/CDS
Intron
PRQ53133

Sequence Viewer

Length: 930 bp
ATGGAAGAATCCCCATATAGTTCTAGGGGACAAGACGAACCCGAGTTCAGCTTGAGAGATTGGGCTCTCAAGGCTAGAGGAATCAGCCGCGAAAACACGAATTCCAGAAGGTTCTCAGCATCCTACATTAGAAGCTTTAGAGAAGACACAAGGTCTTTCAGATCAAACATTACCATCTCCAGCACTGCTTCTTCTCCTGGCTATGCCTTAAGAGATGAAATTGACCCTGCAACTTACTCATTCACCACAGCCCTCAAAGCATTGCAAGCAAGGTCTGCCTACAATAGTTGGGAGGCTTTATCCCCAGATGGGTTTGCTTTACATTCAAAGTGGAATGAAGCAGAGAAATACATATGCAACCCTCTTTCAGGACAAGTCCCAATGGAGTGTTTATCTGCAAAAACACTTAGTGGAAGATCGTTTCGAAACATAACGAATCGTATCACAATGTCTGCACCTCTTGTTTACTCTTCTCACACTAGGCCAATCCATACCACCAAGCCTTCTTATTCAACCAAAGAAGACTTGGCTCGTCAATTCCCAATTCCAGAAAAGAAAAATGAGGGTATGACCAGAGATGTTGGAACTCAAAGCACTCCTCCTGATATCAGTTCTAGCAGTCTTAGCTCTGCTTCAACTCCTCCCATTGTAGAAAGGTCATTAAATCGATTTCGTGGCGGAGATTCACCAAATTCAAATTCAAATTCAAATTCAAAACCAAAATCTGAAGAAGAGGTTGAAGAAGAAGAGATGGAAGTGAAAGATACAGAAGAGGAAGAAGAAACAAAAAGGGAAAAGGAAGAGAGAAAGAAAAAAGAAGAGCAAAAGTGGAGGCAAGGTGGGTGCTTGTCATGGATGAGAAAAAGGTACAGAGAGAAACACAAACCAAGAAAGAAGAATATGTTTCTTTCTCATCTCAAAGCGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

35.33

Weight (kDa)

9.11

Isoelectric Point (pI)

67.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 90
AciI CCGC 2 cut(s) 88, 678
AcsI RAATTY 5 cut(s) 100, 691, 697, 703, 709
AcuI CTGAAG 1 cut(s) 747
AdeI CACNNNGTG 1 cut(s) 410
AfaI GTAC 1 cut(s) 869
AfiI CCNNNNNNNGG 2 cut(s) 309, 368
AflII CTTAAG 1 cut(s) 208
AgsI TTSAA 8 cut(s) 327, 513, 636, 696, 702, 708, 714, 740
AhdI GACNNNNNGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 196
AjuI GAANNNNNNNTTGG 2 cut(s) 682, 714
AluBI AGCT 3 cut(s) 51, 135, 627
AluI AGCT 3 cut(s) 51, 135, 627
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 1 cut(s) 482
ApoI RAATTY 5 cut(s) 100, 691, 697, 703, 709
AsuHPI GGTGA 2 cut(s) 235, 678
AsuII TTCGAA 1 cut(s) 424
AvaI CYCGRG 1 cut(s) 41
BanII GRGCYC 1 cut(s) 67
BbsI GAAGAC 2 cut(s) 150, 528
BccI CCATC 3 cut(s) 182, 302, 745
BciT130I CCWGG 1 cut(s) 198
BfaI CTAG 4 cut(s) 24, 75, 480, 615
BfrI CTTAAG 1 cut(s) 208
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
Bme1390I CCNGG 1 cut(s) 198
BmeRI GACNNNNNGTC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 1 cut(s) 128
BpiI GAAGAC 2 cut(s) 150, 528
BpmI CTGGAG 1 cut(s) 163
Bpu14I TTCGAA 1 cut(s) 424
BpuEI CTTGAG 2 cut(s) 53, 73
Bsa29I ATCGAT 1 cut(s) 667
BsaXI ACNNNNNCTCC 2 cut(s) 823, 853
Bsc4I CCNNNNNNNGG 2 cut(s) 309, 368
Bse3DI GCAATG 1 cut(s) 260
BseBI CCWGG 1 cut(s) 198
BseCI ATCGAT 1 cut(s) 667
BseGI GGATG 2 cut(s) 119, 861
BseLI CCNNNNNNNGG 2 cut(s) 309, 368
BseMI GCAATG 1 cut(s) 260
BseMII CTCAG 1 cut(s) 129
BseRI GAGGAG 2 cut(s) 588, 630
BsgI GTGCAG 1 cut(s) 438
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 1 cut(s) 484
BshVI ATCGAT 1 cut(s) 667
BsiHKCI CYCGRG 1 cut(s) 41
BslFI GGGAC 2 cut(s) 42, 362
BslI CCNNNNNNNGG 2 cut(s) 309, 368
BsmFI GGGAC 2 cut(s) 42, 362
BsnI GGCC 1 cut(s) 484
BsoBI CYCGRG 1 cut(s) 41
Bsp119I TTCGAA 1 cut(s) 424
Bsp1286I GDGCHC 1 cut(s) 67
Bsp143I GATC 2 cut(s) 161, 416
BspACI CCGC 2 cut(s) 88, 678
BspANI GGCC 1 cut(s) 484
BspCNI CTCAG 1 cut(s) 128
BspDI ATCGAT 1 cut(s) 667
BspFNI CGCG 1 cut(s) 90
BspQI GCTCTTC 1 cut(s) 813
BspT104I TTCGAA 1 cut(s) 424
BspTI CTTAAG 1 cut(s) 208
BsrDI GCAATG 1 cut(s) 260
BssMI GATC 2 cut(s) 161, 416
Bst2UI CCWGG 1 cut(s) 198
Bst6I CTCTTC 6 cut(s) 475, 726, 741, 765, 795, 813
BstAFI CTTAAG 1 cut(s) 208
BstAPI GCANNNNNTGC 1 cut(s) 275
BstBI TTCGAA 1 cut(s) 424
BstC8I GCNNGC 2 cut(s) 267, 925
BstDEI CTNAG 3 cut(s) 115, 407, 623
BstENI CCTNNNNNAGG 1 cut(s) 366
BstF5I GGATG 2 cut(s) 119, 861
BstFNI CGCG 1 cut(s) 90
BstKTI GATC 2 cut(s) 164, 419
BstMBI GATC 2 cut(s) 161, 416
BstMWI GCNNNNNNNGC 5 cut(s) 71, 257, 266, 275, 624
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstUI CGCG 1 cut(s) 90
BstV2I GAAGAC 2 cut(s) 150, 528
Bsu15I ATCGAT 1 cut(s) 667
BsuRI GGCC 1 cut(s) 484
BsuTUI ATCGAT 1 cut(s) 667
BtsCI GGATG 2 cut(s) 119, 861
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 2 cut(s) 267, 925
ClaI ATCGAT 1 cut(s) 667
Csp6I GTAC 1 cut(s) 868
CviAII CATG 1 cut(s) 852
CviQI GTAC 1 cut(s) 868
DdeI CTNAG 3 cut(s) 115, 407, 623
DpnI GATC 2 cut(s) 163, 418
DpnII GATC 2 cut(s) 161, 416
DraIII CACNNNGTG 1 cut(s) 410
DriI GACNNNNNGTC 1 cut(s) 151
Eam1104I CTCTTC 6 cut(s) 475, 726, 741, 765, 795, 813
Eam1105I GACNNNNNGTC 1 cut(s) 151
EarI CTCTTC 6 cut(s) 475, 726, 741, 765, 795, 813
EciI GGCGGA 1 cut(s) 693
Eco24I GRGCYC 1 cut(s) 67
Eco32I GATATC 1 cut(s) 607
Eco57I CTGAAG 1 cut(s) 747
Eco88I CYCGRG 1 cut(s) 41
EcoNI CCTNNNNNAGG 1 cut(s) 366
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 196
EcoRV GATATC 1 cut(s) 607
EcoT38I GRGCYC 1 cut(s) 67
FaeI CATG 1 cut(s) 855
FaqI GGGAC 2 cut(s) 42, 362
FatI CATG 1 cut(s) 851
FauNDI CATATG 1 cut(s) 353
Fnu4HI GCNGC 1 cut(s) 88
FokI GGATG 2 cut(s) 106, 868
FriOI GRGCYC 1 cut(s) 67
Fsp4HI GCNGC 1 cut(s) 88
FspBI CTAG 4 cut(s) 24, 75, 480, 615
GluI GCNGC 1 cut(s) 88
GsuI CTGGAG 1 cut(s) 163
HaeIII GGCC 1 cut(s) 484
Hin1II CATG 1 cut(s) 855
HindIII AAGCTT 1 cut(s) 133
HinfI GANTC 4 cut(s) 8, 81, 436, 683
HphI GGTGA 2 cut(s) 235, 678
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 2 cut(s) 161, 727
Hpy188III TCNNGA 4 cut(s) 105, 369, 548, 602
Hpy8I GTNNAC 1 cut(s) 466
HpyAV CCTTC 2 cut(s) 102, 513
HpyCH4V TGCA 5 cut(s) 230, 265, 357, 398, 455
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 257, 266, 275, 624
HpyF3I CTNAG 3 cut(s) 115, 407, 623
Hsp92II CATG 1 cut(s) 855
Kzo9I GATC 2 cut(s) 161, 416
LguI GCTCTTC 1 cut(s) 813
LweI GCATC 1 cut(s) 128
MaeI CTAG 4 cut(s) 24, 75, 480, 615
MalI GATC 2 cut(s) 163, 418
MboI GATC 2 cut(s) 161, 416
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 8 cut(s) 100, 219, 536, 543, 691, 697, 703, 709
MmeI TCCRAC 1 cut(s) 562
MseI TTAA 2 cut(s) 209, 662
MspCI CTTAAG 1 cut(s) 208
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 5 cut(s) 71, 257, 266, 275, 624
NdeI CATATG 1 cut(s) 353
NdeII GATC 2 cut(s) 161, 416
NlaIII CATG 1 cut(s) 855
NspV TTCGAA 1 cut(s) 424
PciSI GCTCTTC 1 cut(s) 813
PfeI GAWTC 4 cut(s) 8, 81, 436, 683
PkrI GCNGC 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
RsaI GTAC 1 cut(s) 869
RsaNI GTAC 1 cut(s) 868
SapI GCTCTTC 1 cut(s) 813
SaqAI TTAA 2 cut(s) 209, 662
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 2 cut(s) 161, 416
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 1 cut(s) 67
SfaNI GCATC 1 cut(s) 128
SfuI TTCGAA 1 cut(s) 424
SmlI CTYRAG 3 cut(s) 52, 68, 208
SmoI CTYRAG 3 cut(s) 52, 68, 208
Sse9I AATT 8 cut(s) 100, 219, 536, 543, 691, 697, 703, 709
SsiI CCGC 2 cut(s) 88, 678
SspMI CTAG 4 cut(s) 24, 75, 480, 615
StyD4I CCNGG 1 cut(s) 196
TaqI TCGA 2 cut(s) 424, 667
TasI AATT 8 cut(s) 100, 219, 536, 543, 691, 697, 703, 709
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 4 cut(s) 8, 81, 436, 683
Tru1I TTAA 2 cut(s) 209, 662
Tru9I TTAA 2 cut(s) 209, 662
TscAI CASTG 1 cut(s) 190
TspDTI ATGAA 2 cut(s) 231, 351
TspRI CASTG 1 cut(s) 190
Vha464I CTTAAG 1 cut(s) 208
XagI CCTNNNNNAGG 1 cut(s) 366
XapI RAATTY 5 cut(s) 100, 691, 697, 703, 709
XcmI CCANNNNNNNNNTGG 1 cut(s) 523
XspI CTAG 4 cut(s) 24, 75, 480, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.