Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006085

Physical Location & Seq

Genomic Coordinates Reverse (-)

72944841 .. 72947529

Gene Structure 2689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG549300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAAGAATCCCCATATAGTTCTAGGGGACAAGACGAACCCGAGTTCAGCTTGAGAGATTGGGCTCTCAAGGCTAGAGGAATCAGCCGCGAAAACACGAATTCCAGAAGGTTCTCAGCATCCTACATTAGAAGCTTTAGAGAAGACACAAGGTCTTTCAGATCAAACATTACCATCTCCAGCACTGCTTCTTCTCCTGGCTATGCCTTAAGAGATGAAATTGACCCTGCAACTTACTCATTCACCACAGCCCTCAAAGCATTGCAAGCAAGGTCTGCCTACAATAGTTGGGAGGCTTTATCCCCAGATGGGTTTGCTTTACATTCAAAGTGGAATGAAGCAGAGAAATACATATGCAACCCTCTTTCAGGACAAGTCCCAATGGAGTGTTTATCTGCAAAAACACTTAGTGGAAGATCGTTTCGAAACATAACGAATCGTATCACAATGTCTGCACCTCTTGTTTACTCTTCTCACACTAGGCCAATCCATACCACCAAGCCTTCTTATTCAACCAAAGAAGACTCGGCTCGTCAATTCCCAATTCCAGAAAAGAAAAATGAGGGTATGACCAGAGATGTTGGAACTCAAAGCACTCCTCCTGATATCAGTTCTAGCAGTCTTAGCTCTGCTTCAACTCCTCCCATTGTAGAAAGATCATTAAATCGATTTCGTGGCGGAGATTCACCAAATTCAAATTCAAATTCAAATTCAAAACCAAAATCTGAAGAAGAGATGGAAGTGAAAGATACAGAAGAGGAAGAAGAAACAAAAAGGGAAAAGGAAGAGAGAAAGAAAAAAGAAGAGCAAAAGTGGAGGCAAGGTGGGTGCTTGTCATGGATGAGAAAAAGGTACAGAGAGAAACACAAACCAAGAAAGAAGAATATGTTTCTTTCTCATCTCAAAGCGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

304

Amino Acids

34.69

Weight (kDa)

9.43

Isoelectric Point (pI)

65.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02500 AT3G02500 AT3G02500 AT5G16030 AT5G16030 AT5G16030 AT5G16030 AT5G16030
fragaria_vesca	FvH4_6g45350 FvH4_6g45350
malus_domestica	MD09G1084800.v1.1 MD17G1074300.v1.1
prunus_persica	Prupe.3G239700_v2.0.a1
pyrus_communis	pycom17g07490
rosa_chinensis	RchiOBHm_Chr2g0163131 RchiOBHm_Chr4g0404491
rosa_laevigata	RLG00000021376
rosa_multiflora	Rmu_sc0002045.1_g000042
rosa_roxburghii	Rroxscaffold_2G00087520
rosa_rugosa	Rorug02G0500800
rosa_samantha	Rh2AG567100 Rh2BG579400 Rh2CG549300 Rh2DG589700 Rh5BG309300 Rh5DG319800
rosa_wichuraiana	Rw2G046960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	90
AciI	CCGC	2 cut(s)	88, 678
AcsI	RAATTY	5 cut(s)	100, 691, 697, 703, 709
AcuI	CTGAAG	1 cut(s)	747
AdeI	CACNNNGTG	1 cut(s)	410
AfaI	GTAC	1 cut(s)	854
AfiI	CCNNNNNNNGG	2 cut(s)	309, 368
AflII	CTTAAG	1 cut(s)	208
AgsI	TTSAA	7 cut(s)	327, 513, 636, 696, 702, 708, 714
AhdI	GACNNNNNGTC	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	682, 714
AluBI	AGCT	3 cut(s)	51, 135, 627
AluI	AGCT	3 cut(s)	51, 135, 627
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	482
ApoI	RAATTY	5 cut(s)	100, 691, 697, 703, 709
AsuHPI	GGTGA	2 cut(s)	235, 678
AsuII	TTCGAA	1 cut(s)	424
AvaI	CYCGRG	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	67
BbsI	GAAGAC	2 cut(s)	150, 528
BccI	CCATC	3 cut(s)	182, 302, 730
BciT130I	CCWGG	1 cut(s)	198
BfaI	CTAG	4 cut(s)	24, 75, 480, 615
BfrI	CTTAAG	1 cut(s)	208
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	198
BmeRI	GACNNNNNGTC	1 cut(s)	151
BmeT110I	CYCGRG	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	128
BpiI	GAAGAC	2 cut(s)	150, 528
BpmI	CTGGAG	1 cut(s)	163
Bpu14I	TTCGAA	1 cut(s)	424
BpuEI	CTTGAG	2 cut(s)	53, 73
Bsa29I	ATCGAT	1 cut(s)	667
BsaXI	ACNNNNNCTCC	2 cut(s)	808, 838
Bsc4I	CCNNNNNNNGG	2 cut(s)	309, 368
Bse3DI	GCAATG	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	198
BseCI	ATCGAT	1 cut(s)	667
BseGI	GGATG	2 cut(s)	119, 846
BseLI	CCNNNNNNNGG	2 cut(s)	309, 368
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	129
BseRI	GAGGAG	2 cut(s)	588, 630
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	484
BshVI	ATCGAT	1 cut(s)	667
BsiHKCI	CYCGRG	1 cut(s)	41
BslFI	GGGAC	2 cut(s)	42, 362
BslI	CCNNNNNNNGG	2 cut(s)	309, 368
BsmFI	GGGAC	2 cut(s)	42, 362
BsnI	GGCC	1 cut(s)	484
BsoBI	CYCGRG	1 cut(s)	41
Bsp119I	TTCGAA	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	3 cut(s)	161, 416, 656
BspACI	CCGC	2 cut(s)	88, 678
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	1 cut(s)	128
BspDI	ATCGAT	1 cut(s)	667
BspFNI	CGCG	1 cut(s)	90
BspQI	GCTCTTC	1 cut(s)	798
BspT104I	TTCGAA	1 cut(s)	424
BspTI	CTTAAG	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	260
BssMI	GATC	3 cut(s)	161, 416, 656
Bst2UI	CCWGG	1 cut(s)	198
Bst6I	CTCTTC	5 cut(s)	475, 726, 750, 780, 798
BstAFI	CTTAAG	1 cut(s)	208
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstBI	TTCGAA	1 cut(s)	424
BstC8I	GCNNGC	2 cut(s)	267, 910
BstDEI	CTNAG	3 cut(s)	115, 407, 623
BstENI	CCTNNNNNAGG	1 cut(s)	366
BstF5I	GGATG	2 cut(s)	119, 846
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	3 cut(s)	164, 419, 659
BstMBI	GATC	3 cut(s)	161, 416, 656
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 257, 266, 275, 624
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	196
BstUI	CGCG	1 cut(s)	90
BstV2I	GAAGAC	2 cut(s)	150, 528
Bsu15I	ATCGAT	1 cut(s)	667
BsuRI	GGCC	1 cut(s)	484
BsuTUI	ATCGAT	1 cut(s)	667
BtsCI	GGATG	2 cut(s)	119, 846
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	2 cut(s)	267, 910
ClaI	ATCGAT	1 cut(s)	667
Csp6I	GTAC	1 cut(s)	853
CviAII	CATG	1 cut(s)	837
CviQI	GTAC	1 cut(s)	853
DdeI	CTNAG	3 cut(s)	115, 407, 623
DpnI	GATC	3 cut(s)	163, 418, 658
DpnII	GATC	3 cut(s)	161, 416, 656
DraIII	CACNNNGTG	1 cut(s)	410
DriI	GACNNNNNGTC	1 cut(s)	151
Eam1104I	CTCTTC	5 cut(s)	475, 726, 750, 780, 798
Eam1105I	GACNNNNNGTC	1 cut(s)	151
EarI	CTCTTC	5 cut(s)	475, 726, 750, 780, 798
EciI	GGCGGA	1 cut(s)	693
Eco24I	GRGCYC	1 cut(s)	67
Eco32I	GATATC	1 cut(s)	607
Eco57I	CTGAAG	1 cut(s)	747
Eco88I	CYCGRG	1 cut(s)	41
EcoNI	CCTNNNNNAGG	1 cut(s)	366
EcoRI	GAATTC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	196
EcoRV	GATATC	1 cut(s)	607
EcoT38I	GRGCYC	1 cut(s)	67
FaeI	CATG	1 cut(s)	840
FaqI	GGGAC	2 cut(s)	42, 362
FatI	CATG	1 cut(s)	836
FauNDI	CATATG	1 cut(s)	353
Fnu4HI	GCNGC	1 cut(s)	88
FokI	GGATG	2 cut(s)	106, 853
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	4 cut(s)	24, 75, 480, 615
GluI	GCNGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	163
HaeIII	GGCC	1 cut(s)	484
Hin1II	CATG	1 cut(s)	840
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	5 cut(s)	8, 81, 436, 524, 683
HphI	GGTGA	2 cut(s)	235, 678
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	2 cut(s)	161, 727
Hpy188III	TCNNGA	4 cut(s)	105, 369, 548, 602
Hpy8I	GTNNAC	1 cut(s)	466
HpyAV	CCTTC	2 cut(s)	102, 513
HpyCH4V	TGCA	5 cut(s)	230, 265, 357, 398, 455
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 257, 266, 275, 624
HpyF3I	CTNAG	3 cut(s)	115, 407, 623
Hsp92II	CATG	1 cut(s)	840
Kzo9I	GATC	3 cut(s)	161, 416, 656
LguI	GCTCTTC	1 cut(s)	798
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	4 cut(s)	24, 75, 480, 615
MalI	GATC	3 cut(s)	163, 418, 658
MboI	GATC	3 cut(s)	161, 416, 656
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	8 cut(s)	100, 219, 536, 543, 691, 697, 703, 709
MlyI	GAGTC	1 cut(s)	518
MmeI	TCCRAC	1 cut(s)	562
MseI	TTAA	2 cut(s)	209, 662
MspCI	CTTAAG	1 cut(s)	208
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	5 cut(s)	71, 257, 266, 275, 624
NdeI	CATATG	1 cut(s)	353
NdeII	GATC	3 cut(s)	161, 416, 656
NlaIII	CATG	1 cut(s)	840
NmeAIII	GCCGAG	1 cut(s)	506
NspV	TTCGAA	1 cut(s)	424
PciSI	GCTCTTC	1 cut(s)	798
PfeI	GAWTC	4 cut(s)	8, 81, 436, 683
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
RsaI	GTAC	1 cut(s)	854
RsaNI	GTAC	1 cut(s)	853
SapI	GCTCTTC	1 cut(s)	798
SaqAI	TTAA	2 cut(s)	209, 662
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	3 cut(s)	161, 416, 656
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	9 cut(s)	53, 113, 137, 155, 275, 460, 629, 826, 854
SfaNI	GCATC	1 cut(s)	128
SfuI	TTCGAA	1 cut(s)	424
SmlI	CTYRAG	3 cut(s)	52, 68, 208
SmoI	CTYRAG	3 cut(s)	52, 68, 208
Sse9I	AATT	8 cut(s)	100, 219, 536, 543, 691, 697, 703, 709
SsiI	CCGC	2 cut(s)	88, 678
SspMI	CTAG	4 cut(s)	24, 75, 480, 615
StyD4I	CCNGG	1 cut(s)	196
TaqI	TCGA	2 cut(s)	424, 667
TasI	AATT	8 cut(s)	100, 219, 536, 543, 691, 697, 703, 709
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	4 cut(s)	8, 81, 436, 683
Tru1I	TTAA	2 cut(s)	209, 662
Tru9I	TTAA	2 cut(s)	209, 662
TscAI	CASTG	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	231, 351
TspRI	CASTG	1 cut(s)	190
Vha464I	CTTAAG	1 cut(s)	208
XagI	CCTNNNNNAGG	1 cut(s)	366
XapI	RAATTY	5 cut(s)	100, 691, 697, 703, 709
XspI	CTAG	4 cut(s)	24, 75, 480, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.