Rorug02G0500800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006085
Physical Location & Seq
Reverse (-)
63328325 .. 63331010
2686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0500800.1

Sequence Viewer

Length: 903 bp
ATGGCCGGAGAAACCCAATTGGCAGAAGCAGCAAAAGGTCCAAACAAGAGGCGAATAGGGAAGACGAAGGGCTCTAAAGCCAGAAAGAAAGCAAAGAAGATGCCGCACGCGTCAGACGGCAGCAGAGCCGTGAAGCCCAAGAAGATTGACCCCAAAATGAAGAAGCTTTATCGAAAACGGGCCAGAGAGTACGATTCAGAGGAGGAGGAGAGTGGTGGGTCTGAAGAGGAAGGAGAAGTAAAAGAGGCGGAAGCTAAGGAGAGGCGTAAAGCAGAGGAAGGGTTCTCGGATGATGAGGAAGACGATGAAGTTCAGCCCGGAATTACGAAACTTTCAGAGGGGTGCAATGCGTTTAGGTTGGCTTTCAGGAGCATAATCAAGAAGAGTGTTGCTGACGATGTAATGGGACCAGTGTTATCGGGGAACAAGAAGCTTATTGCAGAAAAGCTGGCTGAAGAGGATGCTGAGCGCAAGGTCAAGGGAGAGGCTAAGGAAAAACAATTGGTAATAGAAAAGGGGCATGTTGTTAAACCTGTCAACTATGACCCGCATGAAAAGTTTCTAATTAGTCTTGCTACTAGAGGAGTGGTCACATTGTTCAATGCTGTCAGCAAGGCACAGAATGCTCAGAAAGGACTGGATCCTTCCAGGTTTAAAGATGCAAAAGTGATAAGAAAGCGGAGGAAAGAAGCCTTCTTTTCAGAGTTGGGCAAAACTAGTGCTTCTGCAAAGGCTCAGACGTCTAAAGGCTCAGTGGAGAATGAAGGGCCTGCCTGGGCTCCATTGCGAGATAATTTCATGCTAACAAATTCCAAGTTGAAGGACTGGGATAAAATGACGGAGCAAGTTGGGAAAGATGACATTGGAAGGATGTCTGAAGATAGTAGTTCGGACGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

33.3

Weight (kDa)

9.19

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rrp15p PF07890 118 - 236 9.6e-18 Rrp15p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 743
AccII CGCG 1 cut(s) 110
AciI CCGC 4 cut(s) 104, 248, 548, 679
AclWI GGATC 2 cut(s) 635, 648
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 808
AcuI CTGAAG 3 cut(s) 243, 474, 897
AcyI GRCGYC 1 cut(s) 740
AfaI GTAC 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 2 cut(s) 601, 820
AhlI ACTAGT 1 cut(s) 716
AjnI CCWGG 2 cut(s) 647, 773
AluBI AGCT 4 cut(s) 166, 254, 433, 448
AluI AGCT 4 cut(s) 166, 254, 433, 448
AlwI GGATC 2 cut(s) 635, 648
AoxI GGCC 3 cut(s) 3, 180, 767
ApeKI GCWGC 2 cut(s) 29, 120
ApoI RAATTY 1 cut(s) 808
Asp700I GAANNNNTTC 1 cut(s) 558
AspLEI GCGC 1 cut(s) 471
AspS9I GGNCC 4 cut(s) 38, 180, 407, 767
AsuC2I CCSGG 1 cut(s) 318
AvaII GGWCC 2 cut(s) 38, 407
BamHI GGATCC 1 cut(s) 640
BanII GRGCYC 2 cut(s) 74, 781
BbsI GAAGAC 2 cut(s) 68, 306
BbvI GCAGC 2 cut(s) 41, 132
BceAI ACGGC 2 cut(s) 113, 133
BciT130I CCWGG 2 cut(s) 649, 775
BcnI CCSGG 1 cut(s) 318
BcuI ACTAGT 1 cut(s) 716
BfaI CTAG 2 cut(s) 579, 717
BisI GCNGC 3 cut(s) 30, 104, 121
BlpI GCTNAGC 1 cut(s) 465
BlsI GCNGC 3 cut(s) 31, 105, 122
Bme1390I CCNGG 3 cut(s) 318, 649, 775
Bme18I GGWCC 2 cut(s) 38, 407
BmgT120I GGNCC 4 cut(s) 38, 180, 407, 767
BmiI GGNNCC 3 cut(s) 408, 642, 780
BmrFI CCNGG 3 cut(s) 318, 649, 775
BmrI ACTGGG 1 cut(s) 835
BmsI GCATC 3 cut(s) 90, 451, 649
BmuI ACTGGG 1 cut(s) 835
BpiI GAAGAC 2 cut(s) 68, 306
Bpu10I CCTNAGC 2 cut(s) 255, 489
Bpu1102I GCTNAGC 1 cut(s) 465
BpuMI CCSGG 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 740
BsaJI CCNNGG 1 cut(s) 774
Bse1I ACTGG 3 cut(s) 410, 642, 830
Bse3DI GCAATG 2 cut(s) 352, 782
BseBI CCWGG 2 cut(s) 649, 775
BseDI CCNNGG 1 cut(s) 774
BseGI GGATG 3 cut(s) 295, 466, 876
BseMI GCAATG 2 cut(s) 352, 782
BseMII CTCAG 4 cut(s) 456, 641, 749, 765
BseNI ACTGG 3 cut(s) 410, 642, 830
BseRI GAGGAG 4 cut(s) 215, 218, 221, 597
BseXI GCAGC 2 cut(s) 41, 132
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 3 cut(s) 5, 182, 769
BsiSI CCGG 2 cut(s) 6, 318
BslFI GGGAC 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 420
BsmI GAATGC 1 cut(s) 628
BsnI GGCC 3 cut(s) 5, 182, 769
Bsp1286I GDGCHC 2 cut(s) 74, 781
Bsp143I GATC 1 cut(s) 640
Bsp1720I GCTNAGC 1 cut(s) 465
BspACI CCGC 4 cut(s) 104, 248, 548, 679
BspANI GGCC 3 cut(s) 5, 182, 769
BspCNI CTCAG 4 cut(s) 457, 640, 748, 764
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 3 cut(s) 408, 642, 780
BspPI GGATC 2 cut(s) 635, 648
BsrDI GCAATG 2 cut(s) 352, 782
BsrI ACTGG 3 cut(s) 410, 642, 830
BssECI CCNNGG 1 cut(s) 774
BssMI GATC 1 cut(s) 640
BssNI GRCGYC 1 cut(s) 740
Bst2UI CCWGG 2 cut(s) 649, 775
Bst6I CTCTTC 3 cut(s) 219, 377, 450
BstACI GRCGYC 1 cut(s) 740
BstAPI GCANNNNNTGC 1 cut(s) 623
BstC8I GCNNGC 3 cut(s) 108, 450, 771
BstDEI CTNAG 6 cut(s) 255, 465, 489, 627, 735, 751
BstF5I GGATG 3 cut(s) 295, 466, 876
BstFNI CGCG 1 cut(s) 110
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 1 cut(s) 643
BstMBI GATC 1 cut(s) 640
BstMWI GCNNNNNNNGC 2 cut(s) 29, 623
BstNI CCWGG 2 cut(s) 649, 775
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 3 cut(s) 316, 647, 773
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 41, 132
BstV2I GAAGAC 2 cut(s) 68, 306
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
BsuRI GGCC 3 cut(s) 5, 182, 769
BtsCI GGATG 3 cut(s) 295, 466, 876
BtsIMutI CAGTG 2 cut(s) 417, 759
Cac8I GCNNGC 3 cut(s) 108, 450, 771
CfoI GCGC 1 cut(s) 471
Cfr13I GGNCC 4 cut(s) 38, 180, 407, 767
CseI GACGC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 190
CviAII CATG 3 cut(s) 521, 551, 799
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 6 cut(s) 255, 465, 489, 627, 735, 751
DpnI GATC 1 cut(s) 642
DpnII GATC 1 cut(s) 640
DraI TTTAAA 1 cut(s) 655
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 219, 377, 450
EarI CTCTTC 3 cut(s) 219, 377, 450
EciI GGCGGA 1 cut(s) 263
Eco24I GRGCYC 2 cut(s) 74, 781
Eco47I GGWCC 2 cut(s) 38, 407
Eco57I CTGAAG 3 cut(s) 243, 474, 897
EcoO109I RGGNCCY 1 cut(s) 767
EcoRII CCWGG 2 cut(s) 647, 773
EcoT38I GRGCYC 2 cut(s) 74, 781
FaeI CATG 3 cut(s) 524, 554, 802
FaiI YATR 5 cut(s) 374, 522, 543, 552, 800
FaqI GGGAC 1 cut(s) 420
FatI CATG 3 cut(s) 520, 550, 798
FauI CCCGC 1 cut(s) 555
Fnu4HI GCNGC 3 cut(s) 30, 104, 121
FokI GGATG 3 cut(s) 302, 473, 883
FriOI GRGCYC 2 cut(s) 74, 781
Fsp4HI GCNGC 3 cut(s) 30, 104, 121
FspBI CTAG 2 cut(s) 579, 717
GlaI GCGC 1 cut(s) 470
GluI GCNGC 3 cut(s) 30, 104, 121
HaeIII GGCC 3 cut(s) 5, 182, 769
HapII CCGG 2 cut(s) 6, 318
HgaI GACGC 1 cut(s) 99
HhaI GCGC 1 cut(s) 471
Hin1I GRCGYC 1 cut(s) 740
Hin1II CATG 3 cut(s) 524, 554, 802
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HindIII AAGCTT 2 cut(s) 164, 431
HinfI GANTC 1 cut(s) 194
HpaII CCGG 2 cut(s) 6, 318
Hpy166II GTNNAC 1 cut(s) 538
Hpy188III TCNNGA 2 cut(s) 367, 379
Hpy8I GTNNAC 1 cut(s) 538
HpyAV CCTTC 8 cut(s) 61, 224, 272, 654, 703, 758, 814, 861
HpyCH4IV ACGT 1 cut(s) 740
HpyCH4V TGCA 4 cut(s) 345, 440, 662, 728
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 623
HpyF3I CTNAG 6 cut(s) 255, 465, 489, 627, 735, 751
HpySE526I ACGT 1 cut(s) 740
Hsp92I GRCGYC 1 cut(s) 740
Hsp92II CATG 3 cut(s) 524, 554, 802
HspAI GCGC 1 cut(s) 469
Kzo9I GATC 1 cut(s) 640
LmnI GCTCC 3 cut(s) 369, 784, 841
Lsp1109I GCAGC 2 cut(s) 41, 132
LweI GCATC 3 cut(s) 90, 451, 649
MaeI CTAG 2 cut(s) 579, 717
MaeII ACGT 1 cut(s) 740
MaeIII GTNAC 1 cut(s) 589
MalI GATC 1 cut(s) 642
MboI GATC 1 cut(s) 640
MboII GAAGA 9 cut(s) 73, 109, 154, 172, 236, 311, 394, 467, 890
MfeI CAATTG 2 cut(s) 17, 500
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 2 cut(s) 74, 781
MluCI AATT 6 cut(s) 17, 321, 500, 564, 793, 808
MluI ACGCGT 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 558
MseI TTAA 2 cut(s) 528, 654
MspI CCGG 2 cut(s) 6, 318
MspR9I CCNGG 3 cut(s) 318, 649, 775
MunI CAATTG 2 cut(s) 17, 500
Mva1269I GAATGC 1 cut(s) 628
MvaI CCWGG 2 cut(s) 649, 775
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 29, 623
NciI CCSGG 1 cut(s) 318
NdeII GATC 1 cut(s) 640
NlaIII CATG 3 cut(s) 524, 554, 802
NlaIV GGNNCC 3 cut(s) 408, 642, 780
NmuCI GTSAC 1 cut(s) 589
NspI RCATGY 1 cut(s) 524
PctI GAATGC 1 cut(s) 628
PdmI GAANNNNTTC 1 cut(s) 558
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 3 cut(s) 31, 105, 122
Psp6I CCWGG 2 cut(s) 647, 773
PspGI CCWGG 2 cut(s) 647, 773
PspN4I GGNNCC 3 cut(s) 408, 642, 780
PspPI GGNCC 4 cut(s) 38, 180, 407, 767
PsuI RGATCY 1 cut(s) 640
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 2 cut(s) 528, 654
SatI GCNGC 3 cut(s) 30, 104, 121
Sau3AI GATC 1 cut(s) 640
Sau96I GGNCC 4 cut(s) 38, 180, 407, 767
ScrFI CCNGG 3 cut(s) 318, 649, 775
SduI GDGCHC 2 cut(s) 74, 781
SfaNI GCATC 3 cut(s) 90, 451, 649
SinI GGWCC 2 cut(s) 38, 407
SpeI ACTAGT 1 cut(s) 716
Sse9I AATT 6 cut(s) 17, 321, 500, 564, 793, 808
SsiI CCGC 4 cut(s) 104, 248, 548, 679
SspMI CTAG 2 cut(s) 579, 717
StyD4I CCNGG 3 cut(s) 316, 647, 773
TaiI ACGT 1 cut(s) 743
TaqI TCGA 1 cut(s) 172
TasI AATT 6 cut(s) 17, 321, 500, 564, 793, 808
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 528, 654
Tru9I TTAA 2 cut(s) 528, 654
TscAI CASTG 2 cut(s) 417, 759
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 2 cut(s) 29, 120
Tsp45I GTSAC 1 cut(s) 589
TspDTI ATGAA 5 cut(s) 173, 321, 567, 777, 787
TspGWI ACGGA 1 cut(s) 854
TspRI CASTG 2 cut(s) 417, 759
VpaK11BI GGWCC 2 cut(s) 38, 407
XapI RAATTY 1 cut(s) 808
XceI RCATGY 1 cut(s) 524
XmnI GAANNNNTTC 1 cut(s) 558
XspI CTAG 2 cut(s) 579, 717
ZraI GACGTC 1 cut(s) 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.