Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006085

Physical Location & Seq

Genomic Coordinates Forward (+)

6075644 .. 6080404

Gene Structure 4761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1084800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAAGACTCACCATACGGTTCGAGAAGGCGAGATGAGCCGGAGTTCAACCTGAGAGCGTGGGCTGTGAAGGCCAGAATCAGCCGCGAAAACCCGAAGTCTAGAAGGTTTTCGGCTTCTTACATTCGAAGCTTCAGAGAGGACACAAGTTCTTTCAGATCAAACATTACAATCTCCAGCACTGCTTCTTCCCCTGGCTATAACTTAAGAGATGAAATCGACCCGGCAACGTACTCATTCACCACAGCCCTCAAAGCATTGCAGGCAAGGTCCGCTCATCACAGTTGGGAAACGTCATCACCGGAAGGGTTTGCTTTGAATTCAAAGTGGAACGAAGCAGAGAAATACATATGCAACCCTCTATCAGGGCAGGTTCCAATGGAGTGTTTATCTGCAAAAACACTTAGCGGAAGATCGTTTCGAAACGTAACGAATCGAATCACAATGTCTGCACCTCTTGTTTACTCTTCCCACTCAAGACCAATCCATACAACCAACATTGCCAAGCCTTTTTCTAATCCTACAAAAGAAGATTTGGCTCGTCAATTTCCAATTCCAGGGAAGCAAATAGATGGAACGAGAGATGTGGGAACTCAAAGCACTCCTCCTGATTTGAGTTCAAGTAGTTGTCCTAGCTCTACTTCAACCCCTCCGATCGTAGTGAGATCGTCAAATCGATTTCGAGGAGGAGATTCGTCTAAAACAAGTGCAAAATCAAAATCTGATGAAGAGGTGGAAGTGAAAGATACAAAAGAAGAAACAAAAAGAGAAAAGCAAAAGCAAAAGTGCAGGCAAGGTGGGTGCTTGTCATGGATGAGAAGAAGGTACCGAGAGAAACATAAACCAAAAAACAAGAAGAATAACTTTCTTTCTCATCTGAATCTCAAAGGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

33.59

Weight (kDa)

9.94

Isoelectric Point (pI)

66.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02500 AT3G02500 AT3G02500 AT5G16030 AT5G16030 AT5G16030 AT5G16030 AT5G16030
fragaria_vesca	FvH4_6g45350 FvH4_6g45350
malus_domestica	MD09G1084800.v1.1 MD17G1074300.v1.1
prunus_persica	Prupe.3G239700_v2.0.a1
pyrus_communis	pycom17g07490
rosa_chinensis	RchiOBHm_Chr2g0163131 RchiOBHm_Chr4g0404491
rosa_laevigata	RLG00000021376
rosa_multiflora	Rmu_sc0002045.1_g000042
rosa_roxburghii	Rroxscaffold_2G00087520
rosa_rugosa	Rorug02G0500800
rosa_samantha	Rh2AG567100 Rh2BG579400 Rh2CG549300 Rh2DG589700 Rh5BG309300 Rh5DG319800
rosa_wichuraiana	Rw2G046960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	361
Acc65I	GGTACC	1 cut(s)	825
AccB1I	GGYRCC	1 cut(s)	825
AccBSI	CCGCTC	1 cut(s)	275
AccII	CGCG	1 cut(s)	87
AciI	CCGC	3 cut(s)	85, 273, 408
AcsI	RAATTY	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	118
AfaI	GTAC	2 cut(s)	233, 827
AfiI	CCNNNNNNNGG	2 cut(s)	365, 557
AflII	CTTAAG	1 cut(s)	205
AgsI	TTSAA	5 cut(s)	49, 319, 324, 621, 645
AjnI	CCWGG	2 cut(s)	193, 556
AluBI	AGCT	2 cut(s)	132, 636
AluI	AGCT	2 cut(s)	132, 636
AoxI	GGCC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	319
Asp700I	GAANNNNTTC	1 cut(s)	109
Asp718I	GGTACC	1 cut(s)	825
AspS9I	GGNCC	1 cut(s)	270
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	3 cut(s)	3, 232, 291
AsuII	TTCGAA	2 cut(s)	127, 421
AvaII	GGWCC	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	825
BbsI	GAAGAC	1 cut(s)	12
BccI	CCATC	1 cut(s)	566
BciT130I	CCWGG	2 cut(s)	195, 558
BcnI	CCSGG	1 cut(s)	224
BfaI	CTAG	2 cut(s)	102, 633
BfrI	CTTAAG	1 cut(s)	205
BfuAI	ACCTGC	1 cut(s)	361
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
Bme1390I	CCNGG	3 cut(s)	195, 224, 558
Bme18I	GGWCC	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	270
BmiI	GGNNCC	2 cut(s)	375, 827
BmrFI	CCNGG	3 cut(s)	195, 224, 558
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	160
Bpu14I	TTCGAA	2 cut(s)	127, 421
BpuEI	CTTGAG	1 cut(s)	460
BpuMI	CCSGG	1 cut(s)	224
Bsa29I	ATCGAT	1 cut(s)	676
BsaJI	CCNNGG	2 cut(s)	193, 557
BsaWI	WCCGGW	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 557
Bse3DI	GCAATG	2 cut(s)	257, 498
BseBI	CCWGG	2 cut(s)	195, 558
BseCI	ATCGAT	1 cut(s)	676
BseDI	CCNNGG	2 cut(s)	193, 557
BseGI	GGATG	1 cut(s)	819
BseLI	CCNNNNNNNGG	2 cut(s)	365, 557
BseMI	GCAATG	2 cut(s)	257, 498
BseMII	CTCAG	1 cut(s)	44
BseRI	GAGGAG	3 cut(s)	594, 699, 702
BsgI	GTGCAG	2 cut(s)	435, 808
Bsh1236I	CGCG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	657
BshFI	GGCC	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	825
BshVI	ATCGAT	1 cut(s)	676
BsiEI	CGRYCG	1 cut(s)	657
BsiSI	CCGG	3 cut(s)	41, 224, 302
BslI	CCNNNNNNNGG	2 cut(s)	365, 557
BsnI	GGCC	1 cut(s)	74
Bsp119I	TTCGAA	2 cut(s)	127, 421
Bsp143I	GATC	4 cut(s)	158, 413, 654, 665
BspACI	CCGC	3 cut(s)	85, 273, 408
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	45
BspDI	ATCGAT	1 cut(s)	676
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	375, 827
BspMI	ACCTGC	1 cut(s)	361
BspT104I	TTCGAA	2 cut(s)	127, 421
BspT107I	GGYRCC	1 cut(s)	825
BspTI	CTTAAG	1 cut(s)	205
BsrBI	CCGCTC	1 cut(s)	275
BsrDI	GCAATG	2 cut(s)	257, 498
BssECI	CCNNGG	2 cut(s)	193, 557
BssMI	GATC	4 cut(s)	158, 413, 654, 665
Bst2UI	CCWGG	2 cut(s)	195, 558
Bst4CI	ACNGT	2 cut(s)	20, 284
Bst6I	CTCTTC	2 cut(s)	472, 723
BstAFI	CTTAAG	1 cut(s)	205
BstBI	TTCGAA	2 cut(s)	127, 421
BstC8I	GCNNGC	2 cut(s)	264, 791
BstDEI	CTNAG	2 cut(s)	53, 404
BstENI	CCTNNNNNAGG	1 cut(s)	363
BstF5I	GGATG	1 cut(s)	819
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	4 cut(s)	161, 416, 657, 668
BstMBI	GATC	4 cut(s)	158, 413, 654, 665
BstMCI	CGRYCG	1 cut(s)	657
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 71, 254, 263, 272
BstNI	CCWGG	2 cut(s)	195, 558
BstSCI	CCNGG	3 cut(s)	193, 222, 556
BstUI	CGCG	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	12
Bsu15I	ATCGAT	1 cut(s)	676
BsuRI	GGCC	1 cut(s)	74
BsuTUI	ATCGAT	1 cut(s)	676
BtsCI	GGATG	1 cut(s)	819
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	2 cut(s)	264, 791
Cfr13I	GGNCC	1 cut(s)	270
ClaI	ATCGAT	1 cut(s)	676
Csp6I	GTAC	2 cut(s)	232, 826
CviAII	CATG	1 cut(s)	810
CviQI	GTAC	2 cut(s)	232, 826
DdeI	CTNAG	2 cut(s)	53, 404
DpnI	GATC	4 cut(s)	160, 415, 656, 667
DpnII	GATC	4 cut(s)	158, 413, 654, 665
Eam1104I	CTCTTC	2 cut(s)	472, 723
EarI	CTCTTC	2 cut(s)	472, 723
Eco47I	GGWCC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	118
EcoNI	CCTNNNNNAGG	1 cut(s)	363
EcoRI	GAATTC	1 cut(s)	319
EcoRII	CCWGG	2 cut(s)	193, 556
FaeI	CATG	1 cut(s)	813
FaiI	YATR	7 cut(s)	16, 201, 350, 352, 489, 811, 840
FalI	AAGNNNNNCTT	2 cut(s)	848, 880
FatI	CATG	1 cut(s)	809
FauNDI	CATATG	1 cut(s)	350
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	1 cut(s)	826
Fsp4HI	GCNGC	1 cut(s)	85
FspBI	CTAG	2 cut(s)	102, 633
GluI	GCNGC	1 cut(s)	85
GsuI	CTGGAG	1 cut(s)	160
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	3 cut(s)	41, 224, 302
Hin1II	CATG	1 cut(s)	813
HindIII	AAGCTT	1 cut(s)	130
HinfI	GANTC	6 cut(s)	8, 78, 433, 438, 692, 880
HpaII	CCGG	3 cut(s)	41, 224, 302
HphI	GGTGA	3 cut(s)	3, 232, 291
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	5 cut(s)	137, 158, 654, 724, 879
Hpy188III	TCNNGA	4 cut(s)	24, 102, 477, 608
Hpy8I	GTNNAC	1 cut(s)	463
HpyAV	CCTTC	5 cut(s)	21, 64, 99, 299, 816
HpyCH4III	ACNGT	2 cut(s)	20, 284
HpyCH4IV	ACGT	3 cut(s)	230, 293, 426
HpyCH4V	TGCA	6 cut(s)	262, 354, 395, 452, 710, 789
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 71, 254, 263, 272
HpyF3I	CTNAG	2 cut(s)	53, 404
HpySE526I	ACGT	3 cut(s)	230, 293, 426
Hsp92II	CATG	1 cut(s)	813
KpnI	GGTACC	1 cut(s)	829
Kzo9I	GATC	4 cut(s)	158, 413, 654, 665
MaeI	CTAG	2 cut(s)	102, 633
MaeII	ACGT	3 cut(s)	230, 293, 426
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	4 cut(s)	160, 415, 656, 667
MbiI	CCGCTC	1 cut(s)	275
MboI	GATC	4 cut(s)	158, 413, 654, 665
MboII	GAAGA	9 cut(s)	17, 180, 423, 459, 542, 740, 767, 831, 868
MluCI	AATT	3 cut(s)	319, 545, 552
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	9 cut(s)	133, 260, 369, 465, 615, 660, 677, 680, 724
MroXI	GAANNNNTTC	1 cut(s)	109
MseI	TTAA	1 cut(s)	206
MspCI	CTTAAG	1 cut(s)	205
MspI	CCGG	3 cut(s)	41, 224, 302
MspR9I	CCNGG	3 cut(s)	195, 224, 558
MvaI	CCWGG	2 cut(s)	195, 558
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	5 cut(s)	37, 71, 254, 263, 272
NciI	CCSGG	1 cut(s)	224
NdeI	CATATG	1 cut(s)	350
NdeII	GATC	4 cut(s)	158, 413, 654, 665
NlaIII	CATG	1 cut(s)	813
NlaIV	GGNNCC	2 cut(s)	375, 827
NspV	TTCGAA	2 cut(s)	127, 421
PdmI	GAANNNNTTC	1 cut(s)	109
PfeI	GAWTC	5 cut(s)	78, 433, 438, 692, 880
PkrI	GCNGC	1 cut(s)	86
Ple19I	CGATCG	1 cut(s)	657
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
Psp6I	CCWGG	2 cut(s)	193, 556
PspGI	CCWGG	2 cut(s)	193, 556
PspN4I	GGNNCC	2 cut(s)	375, 827
PspPI	GGNCC	1 cut(s)	270
PvuI	CGATCG	1 cut(s)	657
RsaI	GTAC	2 cut(s)	233, 827
RsaNI	GTAC	2 cut(s)	232, 826
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	4 cut(s)	158, 413, 654, 665
Sau96I	GGNCC	1 cut(s)	270
SchI	GAGTC	1 cut(s)	2
ScrFI	CCNGG	3 cut(s)	195, 224, 558
SfuI	TTCGAA	2 cut(s)	127, 421
SinI	GGWCC	1 cut(s)	270
SmlI	CTYRAG	2 cut(s)	205, 475
SmoI	CTYRAG	2 cut(s)	205, 475
Sse9I	AATT	3 cut(s)	319, 545, 552
SsiI	CCGC	3 cut(s)	85, 273, 408
SspMI	CTAG	2 cut(s)	102, 633
StyD4I	CCNGG	3 cut(s)	193, 222, 556
TaaI	ACNGT	2 cut(s)	20, 284
TaiI	ACGT	3 cut(s)	233, 296, 429
TaqI	TCGA	7 cut(s)	23, 127, 219, 421, 436, 676, 682
TasI	AATT	3 cut(s)	319, 545, 552
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	5 cut(s)	78, 433, 438, 692, 880
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	228, 741
TspRI	CASTG	1 cut(s)	187
Vha464I	CTTAAG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	270
XagI	CCTNNNNNAGG	1 cut(s)	363
XapI	RAATTY	1 cut(s)	319
XbaI	TCTAGA	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	109
XspI	CTAG	2 cut(s)	102, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.