Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006085

Physical Location & Seq

Genomic Coordinates Reverse (-)

34821228 .. 34824147

Gene Structure 2920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45350.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGAAGAATCCCCATTCAGTTCTCGGGGACGAGACGAACCTGAGTTCAGCTTGAGAGATTGGGCTGTCAAGGCAAGAGGAATCAGCCGCGAAAACACGAATTCCAGAAGGTTCTCAGCATCCTACATTAGAAGCTTTAGAGAAGACACAAGATCTTTCAGATCAAACATTACCATCTCTAGCACTGCTTCTTCGCCTGGCTATGCCTTAAGAGATGAAATAGACCCTGCAACTTACTCTTTCACTACAGCCATCAAAGCATTACAAGCAAGGTCTGCCTATCATAGTTGGGAGGCTTTATCCCCAGATGGCTTTGCTTTACATTCAAAGTGGAATGAAGCAGAGAAATACATATGCAACCCTCTTTCAGGACAAGTCCCATTAGAGTGTTTATCTGCAAAAACACTTAGTGGAAGATCGTTTCGAAACATGACGGATCGAATCACAATGTCTGCACCTCTTGTTTACTCTTCTCACACTAGGCCAATCCATACCACCAAGCCTTCAAGTTCCACCAAAGAAGACTTGGCTCGTCATTTCCCAATTCAAGAAAAGAAAAATGAGGGTATGACTAGAGATGTTGGAACTCAAAGCACTCCTGATATCAGTTCTAGCAGTCTTAGCTCTGCTTCAACTCCTCCCATTGTAGAAAGATCATTAAACCGATTTCGTGGTGGAGATTCACCAAATTCAAATTCAAATTCAAATTCGAAACCAAAATCTGAGGAAGAGGATGGAGAAGAAGAGATGGAAGTGAAAGATACTGAAGAGGGAGAAGGAACAAAAAGAGAAAAGGAAGAGAGAAAGAAAAAAGAAGAGCAAAAGTGGAGGCAAGGTGGGTGCTTGTCATGGATGAGAAAAAGGTACAGAGAGAAACACAAACCAAGAAAGAAGAACATGTTTCTTTCTCAGCTCAAAGGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

35.0

Weight (kDa)

9.31

Isoelectric Point (pI)

62.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02500 AT3G02500 AT3G02500 AT5G16030 AT5G16030 AT5G16030 AT5G16030 AT5G16030
fragaria_vesca	FvH4_6g45350 FvH4_6g45350
malus_domestica	MD09G1084800.v1.1 MD17G1074300.v1.1
prunus_persica	Prupe.3G239700_v2.0.a1
pyrus_communis	pycom17g07490
rosa_chinensis	RchiOBHm_Chr2g0163131 RchiOBHm_Chr4g0404491
rosa_laevigata	RLG00000021376
rosa_multiflora	Rmu_sc0002045.1_g000042
rosa_roxburghii	Rroxscaffold_2G00087520
rosa_rugosa	Rorug02G0500800
rosa_samantha	Rh2AG567100 Rh2BG579400 Rh2CG549300 Rh2DG589700 Rh5BG309300 Rh5DG319800
rosa_wichuraiana	Rw2G046960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	90
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	1 cut(s)	444
AcsI	RAATTY	5 cut(s)	100, 688, 694, 700, 706
AcuI	CTGAAG	1 cut(s)	786
AdeI	CACNNNGTG	1 cut(s)	410
AfaI	GTAC	1 cut(s)	866
AfiI	CCNNNNNNNGG	1 cut(s)	368
AflII	CTTAAG	1 cut(s)	208
AflIII	ACRYGT	1 cut(s)	897
AgsI	TTSAA	7 cut(s)	327, 507, 548, 633, 693, 699, 705
AjnI	CCWGG	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	679, 711
AluBI	AGCT	4 cut(s)	51, 135, 624, 913
AluI	AGCT	4 cut(s)	51, 135, 624, 913
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	444
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	1 cut(s)	482
ApoI	RAATTY	5 cut(s)	100, 688, 694, 700, 706
AsuHPI	GGTGA	1 cut(s)	675
AsuII	TTCGAA	2 cut(s)	424, 710
AvaI	CYCGRG	1 cut(s)	24
BbsI	GAAGAC	2 cut(s)	150, 528
BccI	CCATC	5 cut(s)	182, 260, 302, 728, 742
BciT130I	CCWGG	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	4 cut(s)	180, 480, 573, 612
BfmI	CTRYAG	1 cut(s)	246
BfrI	CTTAAG	1 cut(s)	208
BglII	AGATCT	1 cut(s)	152
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	198
BmeT110I	CYCGRG	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	128
BpiI	GAAGAC	2 cut(s)	150, 528
Bpu14I	TTCGAA	2 cut(s)	424, 710
BpuEI	CTTGAG	1 cut(s)	73
BsaXI	ACNNNNNCTCC	2 cut(s)	820, 850
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
BseBI	CCWGG	1 cut(s)	198
BseGI	GGATG	3 cut(s)	119, 739, 858
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMII	CTCAG	4 cut(s)	33, 129, 714, 923
BseRI	GAGGAG	1 cut(s)	627
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	484
BsiHKCI	CYCGRG	1 cut(s)	24
BslFI	GGGAC	2 cut(s)	42, 362
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	27
BsmBI	CGTCTC	1 cut(s)	27
BsmFI	GGGAC	2 cut(s)	42, 362
BsnI	GGCC	1 cut(s)	484
BsoBI	CYCGRG	1 cut(s)	24
Bsp119I	TTCGAA	2 cut(s)	424, 710
Bsp143I	GATC	5 cut(s)	152, 161, 416, 436, 653
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	4 cut(s)	34, 128, 715, 922
BspFNI	CGCG	1 cut(s)	90
BspPI	GGATC	1 cut(s)	444
BspQI	GCTCTTC	1 cut(s)	810
BspT104I	TTCGAA	2 cut(s)	424, 710
BspTI	CTTAAG	1 cut(s)	208
BssMI	GATC	5 cut(s)	152, 161, 416, 436, 653
Bst2UI	CCWGG	1 cut(s)	198
Bst6I	CTCTTC	6 cut(s)	475, 723, 738, 762, 792, 810
BstAFI	CTTAAG	1 cut(s)	208
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstBI	TTCGAA	2 cut(s)	424, 710
BstDEI	CTNAG	6 cut(s)	42, 115, 407, 620, 723, 909
BstENI	CCTNNNNNAGG	1 cut(s)	366
BstF5I	GGATG	3 cut(s)	119, 739, 858
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	5 cut(s)	155, 164, 419, 439, 656
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	5 cut(s)	152, 161, 416, 436, 653
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 257, 266, 275, 621
BstNI	CCWGG	1 cut(s)	198
BstNSI	RCATGY	1 cut(s)	901
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	246
BstUI	CGCG	1 cut(s)	90
BstV2I	GAAGAC	2 cut(s)	150, 528
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	484
BtsCI	GGATG	3 cut(s)	119, 739, 858
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	865
CviAII	CATG	3 cut(s)	430, 849, 898
CviQI	GTAC	1 cut(s)	865
DdeI	CTNAG	6 cut(s)	42, 115, 407, 620, 723, 909
DpnI	GATC	5 cut(s)	154, 163, 418, 438, 655
DpnII	GATC	5 cut(s)	152, 161, 416, 436, 653
DraIII	CACNNNGTG	1 cut(s)	410
Eam1104I	CTCTTC	6 cut(s)	475, 723, 738, 762, 792, 810
EarI	CTCTTC	6 cut(s)	475, 723, 738, 762, 792, 810
Eco32I	GATATC	1 cut(s)	604
Eco57I	CTGAAG	1 cut(s)	786
Eco88I	CYCGRG	1 cut(s)	24
EcoNI	CCTNNNNNAGG	1 cut(s)	366
EcoRI	GAATTC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	196
EcoRV	GATATC	1 cut(s)	604
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	3 cut(s)	433, 852, 901
FaiI	YATR	9 cut(s)	204, 285, 353, 355, 431, 492, 569, 850, 899
FaqI	GGGAC	2 cut(s)	42, 362
FatI	CATG	3 cut(s)	429, 848, 897
FauNDI	CATATG	1 cut(s)	353
Fnu4HI	GCNGC	1 cut(s)	88
FokI	GGATG	3 cut(s)	106, 746, 865
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	4 cut(s)	180, 480, 573, 612
GluI	GCNGC	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	484
Hin1II	CATG	3 cut(s)	433, 852, 901
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	4 cut(s)	8, 81, 441, 680
HphI	GGTGA	1 cut(s)	675
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	2 cut(s)	161, 724
Hpy188III	TCNNGA	4 cut(s)	105, 369, 548, 599
Hpy8I	GTNNAC	1 cut(s)	466
HpyAV	CCTTC	3 cut(s)	102, 513, 770
HpyCH4V	TGCA	4 cut(s)	230, 357, 398, 455
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 257, 266, 275, 621
HpyF3I	CTNAG	6 cut(s)	42, 115, 407, 620, 723, 909
Hsp92II	CATG	3 cut(s)	433, 852, 901
Kzo9I	GATC	5 cut(s)	152, 161, 416, 436, 653
LguI	GCTCTTC	1 cut(s)	810
LpnPI	CCDG	8 cut(s)	54, 118, 183, 210, 240, 318, 354, 612
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	4 cut(s)	180, 480, 573, 612
MalI	GATC	5 cut(s)	154, 163, 418, 438, 655
MboI	GATC	5 cut(s)	152, 161, 416, 436, 653
MflI	RGATCY	1 cut(s)	152
MluCI	AATT	6 cut(s)	100, 543, 688, 694, 700, 706
MmeI	TCCRAC	1 cut(s)	562
MseI	TTAA	2 cut(s)	209, 659
MslI	CAYNNNNRTG	1 cut(s)	385
MspCI	CTTAAG	1 cut(s)	208
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	5 cut(s)	71, 257, 266, 275, 621
NdeI	CATATG	1 cut(s)	353
NdeII	GATC	5 cut(s)	152, 161, 416, 436, 653
NlaIII	CATG	3 cut(s)	433, 852, 901
NspI	RCATGY	1 cut(s)	901
NspV	TTCGAA	2 cut(s)	424, 710
PciI	ACATGT	1 cut(s)	897
PciSI	GCTCTTC	1 cut(s)	810
PfeI	GAWTC	4 cut(s)	8, 81, 441, 680
PkrI	GCNGC	1 cut(s)	89
PscI	ACATGT	1 cut(s)	897
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	152
RsaI	GTAC	1 cut(s)	866
RsaNI	GTAC	1 cut(s)	865
RseI	CAYNNNNRTG	1 cut(s)	385
SapI	GCTCTTC	1 cut(s)	810
SaqAI	TTAA	2 cut(s)	209, 659
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	5 cut(s)	152, 161, 416, 436, 653
ScrFI	CCNGG	1 cut(s)	198
SfaNI	GCATC	1 cut(s)	128
SfcI	CTRYAG	1 cut(s)	246
SfuI	TTCGAA	2 cut(s)	424, 710
SmiMI	CAYNNNNRTG	1 cut(s)	385
SmlI	CTYRAG	2 cut(s)	52, 208
SmoI	CTYRAG	2 cut(s)	52, 208
Sse9I	AATT	6 cut(s)	100, 543, 688, 694, 700, 706
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	4 cut(s)	180, 480, 573, 612
StyD4I	CCNGG	1 cut(s)	196
TaqI	TCGA	3 cut(s)	424, 439, 710
TasI	AATT	6 cut(s)	100, 543, 688, 694, 700, 706
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	4 cut(s)	8, 81, 441, 680
Tru1I	TTAA	2 cut(s)	209, 659
Tru9I	TTAA	2 cut(s)	209, 659
TscAI	CASTG	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	231, 351
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	1 cut(s)	190
Vha464I	CTTAAG	1 cut(s)	208
XagI	CCTNNNNNAGG	1 cut(s)	366
XapI	RAATTY	5 cut(s)	100, 688, 694, 700, 706
XceI	RCATGY	1 cut(s)	901
XcmI	CCANNNNNNNNNTGG	1 cut(s)	523
XspI	CTAG	4 cut(s)	180, 480, 573, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.