Rroxscaffold_2G00087520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0006085
Physical Location & Seq
Forward (+)
9548193 .. 9550784
2592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00087520.1

Sequence Viewer

Length: 924 bp
ATGGAAGAATCCCCATATAGTTCTAGGGGACAAGACGACCCCGAGTTCAGCTTGAGAGATTGGGCTGTCAAGGCTAGAGGCATCAGCCATGAAAACACGAATTCCAGAAGGTTCTCAGCATCCTACATTAGAAGCTTTAGAGAAGACACAAGGTCTTTCAGATCAAACATTACCATCTCCAGCACTGCTTCTTCTCCTGGCTATGCCTTAAGAGATGAAATTGACCCTGCAACTTACTCATTCACCACTGCCCTCAAAGCATTGCAAGCAAGGTCTGCCTACAATAGTTGGGAGGCTTTATCCCCAGATGGGTTTGCTTTACATTCAAAGTGGAATGAAGCAGAGAAATACATATGCAACCCTCTTTCAGGACAAGTCCCAATGGAGTGTTTATCTGCAAAAACACTTAGTGGAAGATCGTTTCGAAACATAACGAATCGAATCACAATGTCTGCACCTCTTGTTTACTCTTCTCACACTAGGCCAATCCATACCACCAAGCCTTCTTATTCAACCAAAGAAGACTTGGCTCGTCAATTCCCAATTCCAGCAAAGAAAAATGAGGGTATGACCAGAGATGTTGGAACTCAAAGCACTCCTCCTGATATCAGTTCTAGCAGTCTTAGCTCTGCTTCAACTCCTCCAATTGTAGAAAGATCATTAAATCGATTTCGTGGCGGAGATTCACCAAATTCAAATTCAAATTCAAAACCAAAATCTGAAGAAGAGGTTGAAGAAGAAGAGATGGAAGTGAAAGATACCGAAGAGGAAGAAGAAACAAAAAGGGAAAAGGAAGAGAGAAAGAAAAAAGAAGAGCAAAAGTGGAGGCAAGGTGGGTGCTTGTCATGGATGAGAAAAAGGTACAGAGAGAAACACAAACCAAGAAAGAAGAATATGTTTCTTTCTCATCTCAAAGCGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

307

Amino Acids

35.03

Weight (kDa)

9.11

Isoelectric Point (pI)

66.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 678
AcsI RAATTY 4 cut(s) 100, 691, 697, 703
AcuI CTGAAG 1 cut(s) 741
AdeI CACNNNGTG 1 cut(s) 410
AfaI GTAC 1 cut(s) 863
AfiI CCNNNNNNNGG 2 cut(s) 309, 368
AflII CTTAAG 1 cut(s) 208
AgsI TTSAA 7 cut(s) 327, 513, 636, 696, 702, 708, 734
AhdI GACNNNNNGTC 1 cut(s) 151
AjnI CCWGG 1 cut(s) 196
AjuI GAANNNNNNNTTGG 2 cut(s) 682, 714
AluBI AGCT 3 cut(s) 51, 135, 627
AluI AGCT 3 cut(s) 51, 135, 627
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 1 cut(s) 482
ApoI RAATTY 4 cut(s) 100, 691, 697, 703
AsuHPI GGTGA 2 cut(s) 235, 678
AsuII TTCGAA 1 cut(s) 424
AvaI CYCGRG 1 cut(s) 41
BbsI GAAGAC 2 cut(s) 150, 528
BccI CCATC 3 cut(s) 182, 302, 739
BciT130I CCWGG 1 cut(s) 198
BfaI CTAG 4 cut(s) 24, 75, 480, 615
BfrI CTTAAG 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 198
BmeRI GACNNNNNGTC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 2 cut(s) 90, 128
BpiI GAAGAC 2 cut(s) 150, 528
BpmI CTGGAG 1 cut(s) 163
Bpu14I TTCGAA 1 cut(s) 424
BpuEI CTTGAG 1 cut(s) 73
Bsa29I ATCGAT 1 cut(s) 667
BsaXI ACNNNNNCTCC 2 cut(s) 817, 847
Bsc4I CCNNNNNNNGG 2 cut(s) 309, 368
Bse3DI GCAATG 1 cut(s) 260
BseBI CCWGG 1 cut(s) 198
BseCI ATCGAT 1 cut(s) 667
BseGI GGATG 2 cut(s) 119, 855
BseLI CCNNNNNNNGG 2 cut(s) 309, 368
BseMI GCAATG 1 cut(s) 260
BseMII CTCAG 1 cut(s) 129
BseRI GAGGAG 2 cut(s) 588, 630
BsgI GTGCAG 1 cut(s) 438
BshFI GGCC 1 cut(s) 484
BshVI ATCGAT 1 cut(s) 667
BsiHKCI CYCGRG 1 cut(s) 41
BslFI GGGAC 2 cut(s) 42, 362
BslI CCNNNNNNNGG 2 cut(s) 309, 368
BsmFI GGGAC 2 cut(s) 42, 362
BsnI GGCC 1 cut(s) 484
BsoBI CYCGRG 1 cut(s) 41
Bsp119I TTCGAA 1 cut(s) 424
Bsp143I GATC 3 cut(s) 161, 416, 656
BspACI CCGC 1 cut(s) 678
BspANI GGCC 1 cut(s) 484
BspCNI CTCAG 1 cut(s) 128
BspDI ATCGAT 1 cut(s) 667
BspQI GCTCTTC 1 cut(s) 807
BspT104I TTCGAA 1 cut(s) 424
BspTI CTTAAG 1 cut(s) 208
BsrDI GCAATG 1 cut(s) 260
BssMI GATC 3 cut(s) 161, 416, 656
Bst2UI CCWGG 1 cut(s) 198
Bst6I CTCTTC 6 cut(s) 475, 720, 735, 759, 789, 807
BstAFI CTTAAG 1 cut(s) 208
BstAPI GCANNNNNTGC 1 cut(s) 275
BstBI TTCGAA 1 cut(s) 424
BstC8I GCNNGC 2 cut(s) 267, 919
BstDEI CTNAG 3 cut(s) 115, 407, 623
BstENI CCTNNNNNAGG 1 cut(s) 366
BstF5I GGATG 2 cut(s) 119, 855
BstKTI GATC 3 cut(s) 164, 419, 659
BstMBI GATC 3 cut(s) 161, 416, 656
BstMWI GCNNNNNNNGC 5 cut(s) 71, 257, 266, 275, 624
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstV2I GAAGAC 2 cut(s) 150, 528
Bsu15I ATCGAT 1 cut(s) 667
BsuRI GGCC 1 cut(s) 484
BsuTUI ATCGAT 1 cut(s) 667
BtsCI GGATG 2 cut(s) 119, 855
BtsI GCAGTG 2 cut(s) 183, 246
BtsIMutI CAGTG 2 cut(s) 183, 246
Cac8I GCNNGC 2 cut(s) 267, 919
ClaI ATCGAT 1 cut(s) 667
Csp6I GTAC 1 cut(s) 862
CviAII CATG 2 cut(s) 89, 846
CviQI GTAC 1 cut(s) 862
DdeI CTNAG 3 cut(s) 115, 407, 623
DpnI GATC 3 cut(s) 163, 418, 658
DpnII GATC 3 cut(s) 161, 416, 656
DraIII CACNNNGTG 1 cut(s) 410
DriI GACNNNNNGTC 1 cut(s) 151
Eam1104I CTCTTC 6 cut(s) 475, 720, 735, 759, 789, 807
Eam1105I GACNNNNNGTC 1 cut(s) 151
EarI CTCTTC 6 cut(s) 475, 720, 735, 759, 789, 807
EciI GGCGGA 1 cut(s) 693
Eco32I GATATC 1 cut(s) 607
Eco57I CTGAAG 1 cut(s) 741
Eco88I CYCGRG 1 cut(s) 41
EcoNI CCTNNNNNAGG 1 cut(s) 366
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 1 cut(s) 196
EcoRV GATATC 1 cut(s) 607
FaeI CATG 2 cut(s) 92, 849
FaqI GGGAC 2 cut(s) 42, 362
FatI CATG 2 cut(s) 88, 845
FauNDI CATATG 1 cut(s) 353
FokI GGATG 2 cut(s) 106, 862
FspBI CTAG 4 cut(s) 24, 75, 480, 615
GsuI CTGGAG 1 cut(s) 163
HaeIII GGCC 1 cut(s) 484
Hin1II CATG 2 cut(s) 92, 849
HindIII AAGCTT 1 cut(s) 133
HinfI GANTC 4 cut(s) 8, 436, 441, 683
HphI GGTGA 2 cut(s) 235, 678
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 2 cut(s) 161, 721
Hpy188III TCNNGA 3 cut(s) 105, 369, 602
Hpy8I GTNNAC 1 cut(s) 466
HpyAV CCTTC 2 cut(s) 102, 513
HpyCH4V TGCA 5 cut(s) 230, 265, 357, 398, 455
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 257, 266, 275, 624
HpyF3I CTNAG 3 cut(s) 115, 407, 623
Hsp92II CATG 2 cut(s) 92, 849
Kzo9I GATC 3 cut(s) 161, 416, 656
LguI GCTCTTC 1 cut(s) 807
LweI GCATC 2 cut(s) 90, 128
MaeI CTAG 4 cut(s) 24, 75, 480, 615
MalI GATC 3 cut(s) 163, 418, 658
MboI GATC 3 cut(s) 161, 416, 656
MfeI CAATTG 1 cut(s) 645
MluCI AATT 8 cut(s) 100, 219, 536, 543, 645, 691, 697, 703
MmeI TCCRAC 1 cut(s) 562
MseI TTAA 2 cut(s) 209, 662
MspCI CTTAAG 1 cut(s) 208
MspR9I CCNGG 1 cut(s) 198
MunI CAATTG 1 cut(s) 645
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 5 cut(s) 71, 257, 266, 275, 624
NdeI CATATG 1 cut(s) 353
NdeII GATC 3 cut(s) 161, 416, 656
NlaIII CATG 2 cut(s) 92, 849
NspV TTCGAA 1 cut(s) 424
PciSI GCTCTTC 1 cut(s) 807
PfeI GAWTC 4 cut(s) 8, 436, 441, 683
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
RsaI GTAC 1 cut(s) 863
RsaNI GTAC 1 cut(s) 862
SapI GCTCTTC 1 cut(s) 807
SaqAI TTAA 2 cut(s) 209, 662
Sau3AI GATC 3 cut(s) 161, 416, 656
ScrFI CCNGG 1 cut(s) 198
SfaNI GCATC 2 cut(s) 90, 128
SfuI TTCGAA 1 cut(s) 424
SmlI CTYRAG 2 cut(s) 52, 208
SmoI CTYRAG 2 cut(s) 52, 208
Sse9I AATT 8 cut(s) 100, 219, 536, 543, 645, 691, 697, 703
SsiI CCGC 1 cut(s) 678
SspMI CTAG 4 cut(s) 24, 75, 480, 615
StyD4I CCNGG 1 cut(s) 196
TaqI TCGA 3 cut(s) 424, 439, 667
TasI AATT 8 cut(s) 100, 219, 536, 543, 645, 691, 697, 703
TfiI GAWTC 4 cut(s) 8, 436, 441, 683
Tru1I TTAA 2 cut(s) 209, 662
Tru9I TTAA 2 cut(s) 209, 662
TscAI CASTG 2 cut(s) 190, 253
TspDTI ATGAA 3 cut(s) 105, 231, 351
TspRI CASTG 2 cut(s) 190, 253
Vha464I CTTAAG 1 cut(s) 208
XagI CCTNNNNNAGG 1 cut(s) 366
XapI RAATTY 4 cut(s) 100, 691, 697, 703
XcmI CCANNNNNNNNNTGG 1 cut(s) 523
XspI CTAG 4 cut(s) 24, 75, 480, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.