Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006085

Physical Location & Seq

Genomic Coordinates Reverse (-)

23381236 .. 23384231

Gene Structure 2996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G239700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTTCTCCACCATGGAAGAGCCACCATATGGTTCAAGAAGGCGAGATGAGACAGAGTTCAGTTTGAGAGAATGGGCTGTGAAGGCTAGAATCAGCCGTGAAAACACAAATTCCAGAAGGTTTTCAGCTTCATATGTTAGAAGCTTCAGAGAGGACACAAGGTCTTTCAGATCAAACATAACCATCTCTAGTACTGCTTCTTCTCCTGGCTATAACTTAAGAGACGAAATCGACCCGGCAACCTACTCATTCACCACTGCCCTCAAAGCATTGCAGGCAAGGTCAGCATATCATAGTTGGGAATCTTTGTCACCAGATGGGTTTGCTTTGAATTCTAAGTGGAATGAAGCAGAGAAATATATATGCAACCCTCTATCAGGGCAGGTTCCAATGGAGTGTTTATCTGCAAAAACACTTAGTGGAAGATCGTTTCGAAACATAACCAATAGAATTACAATGTCTGCACCTCTTGTTTACTCTTCCCACTCAAGACCAATTCATGCCAAGCCTTCTTCTAATCCTGCAAAAGAAGATTTTGTTCGTCAGTTTCCAATTCCAGAGAAGAAAACAGAAGGCACGACCAGAGATGTGGGGACTCAAAGCACACCTCCTGATATGAGTTCAAGTAGTCCTCCTAGCTCTGCTTCAACCCCTTCAATCATAGAGAGATCGTTAAACCGATTCCGAGTAGGAGACTCGCCTAAATCAAATGCAAAATTAAAATCTGATGAAGAGGTGGAAGTGAAAGATACAAGAGAGCAAGAAGAAACAAAAGGAGAAAAGGAAGAGAGAAAGAAAAGGGATGATGAGCAACAGCGCAGGCAAGGTGGGTGCTTGTCATGGATGAGAAAAAGGTACAGAGAAAAACACAAACCAAGAAAGAAGAATATCTTTCTTTCTCATCTCAAAGGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

34.88

Weight (kDa)

9.71

Isoelectric Point (pI)

70.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02500 AT3G02500 AT3G02500 AT5G16030 AT5G16030 AT5G16030 AT5G16030 AT5G16030
fragaria_vesca	FvH4_6g45350 FvH4_6g45350
malus_domestica	MD09G1084800.v1.1 MD17G1074300.v1.1
prunus_persica	Prupe.3G239700_v2.0.a1
pyrus_communis	pycom17g07490
rosa_chinensis	RchiOBHm_Chr2g0163131 RchiOBHm_Chr4g0404491
rosa_laevigata	RLG00000021376
rosa_multiflora	Rmu_sc0002045.1_g000042
rosa_roxburghii	Rroxscaffold_2G00087520
rosa_rugosa	Rorug02G0500800
rosa_samantha	Rh2AG567100 Rh2BG579400 Rh2CG549300 Rh2DG589700 Rh5BG309300 Rh5DG319800
rosa_wichuraiana	Rw2G046960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	373
AccB7I	CCANNNNNTGG	1 cut(s)	29
AcsI	RAATTY	2 cut(s)	109, 331
AcuI	CTGAAG	1 cut(s)	130
AdeI	CACNNNGTG	1 cut(s)	419
AfaI	GTAC	2 cut(s)	193, 857
AfiI	CCNNNNNNNGG	2 cut(s)	29, 377
AflII	CTTAAG	1 cut(s)	217
AgsI	TTSAA	5 cut(s)	36, 331, 624, 648, 657
AhdI	GACNNNNNGTC	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	3 cut(s)	128, 144, 639
AluI	AGCT	3 cut(s)	128, 144, 639
Alw26I	GTCTC	3 cut(s)	44, 216, 687
ApoI	RAATTY	2 cut(s)	109, 331
Asp700I	GAANNNNTTC	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	819
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	2 cut(s)	244, 303
AsuII	TTCGAA	1 cut(s)	433
BarI	GAAGNNNNNNTAC	2 cut(s)	184, 216
BccI	CCATC	2 cut(s)	191, 311
BceAI	ACGGC	1 cut(s)	81
BciT130I	CCWGG	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	3 cut(s)	44, 216, 687
BfaI	CTAG	3 cut(s)	87, 189, 636
BfrI	CTTAAG	1 cut(s)	217
BfuAI	ACCTGC	1 cut(s)	373
BmcAI	AGTACT	1 cut(s)	193
Bme1390I	CCNGG	2 cut(s)	207, 236
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	2 cut(s)	207, 236
Bpu14I	TTCGAA	1 cut(s)	433
BpuEI	CTTGAG	1 cut(s)	472
BpuMI	CCSGG	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 377
Bse3DI	GCAATG	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	2 cut(s)	808, 849
BseLI	CCNNNNNNNGG	2 cut(s)	29, 377
BseMI	GCAATG	1 cut(s)	269
BsgI	GTGCAG	1 cut(s)	447
BsiSI	CCGG	1 cut(s)	236
BslFI	GGGAC	1 cut(s)	607
BslI	CCNNNNNNNGG	2 cut(s)	29, 377
BsmAI	GTCTC	3 cut(s)	44, 216, 687
BsmBI	CGTCTC	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	607
Bsp119I	TTCGAA	1 cut(s)	433
Bsp143I	GATC	3 cut(s)	170, 425, 668
Bsp19I	CCATGG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	387
BspMI	ACCTGC	1 cut(s)	373
BspQI	GCTCTTC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	433
BspTI	CTTAAG	1 cut(s)	217
BsrDI	GCAATG	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	3 cut(s)	170, 425, 668
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	207
Bst6I	CTCTTC	4 cut(s)	12, 484, 726, 780
BstAFI	CTTAAG	1 cut(s)	217
BstBI	TTCGAA	1 cut(s)	433
BstC8I	GCNNGC	2 cut(s)	276, 821
BstDEI	CTNAG	2 cut(s)	336, 416
BstDSI	CCRYGG	1 cut(s)	12
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	2 cut(s)	808, 849
BstHHI	GCGC	1 cut(s)	819
BstKTI	GATC	3 cut(s)	173, 428, 671
BstMAI	GTCTC	3 cut(s)	44, 216, 687
BstMBI	GATC	3 cut(s)	170, 425, 668
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 266, 275, 284
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	205, 234
BstXI	CCANNNNNNTGG	1 cut(s)	589
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	808, 849
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	255
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	2 cut(s)	276, 821
CfoI	GCGC	1 cut(s)	819
Csp6I	GTAC	2 cut(s)	192, 856
CviAII	CATG	3 cut(s)	13, 500, 840
CviJI	RGCY	9 cut(s)	22, 77, 86, 96, 128, 144, 210, 508, 639
CviKI_1	RGCY	9 cut(s)	22, 77, 86, 96, 128, 144, 210, 508, 639
CviQI	GTAC	2 cut(s)	192, 856
DdeI	CTNAG	2 cut(s)	336, 416
DpnI	GATC	3 cut(s)	172, 427, 670
DpnII	GATC	3 cut(s)	170, 425, 668
DraIII	CACNNNGTG	1 cut(s)	419
DriI	GACNNNNNGTC	1 cut(s)	160
Eam1104I	CTCTTC	4 cut(s)	12, 484, 726, 780
Eam1105I	GACNNNNNGTC	1 cut(s)	160
EarI	CTCTTC	4 cut(s)	12, 484, 726, 780
Eco130I	CCWWGG	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	3 cut(s)	16, 503, 843
FalI	AAGNNNNNCTT	2 cut(s)	875, 907
FaqI	GGGAC	1 cut(s)	607
FatI	CATG	3 cut(s)	12, 499, 839
FauNDI	CATATG	2 cut(s)	28, 133
FokI	GGATG	2 cut(s)	815, 856
FspBI	CTAG	3 cut(s)	87, 189, 636
GlaI	GCGC	1 cut(s)	818
HapII	CCGG	1 cut(s)	236
HhaI	GCGC	1 cut(s)	819
Hin1II	CATG	3 cut(s)	16, 503, 843
Hin6I	GCGC	1 cut(s)	817
HinP1I	GCGC	1 cut(s)	817
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	5 cut(s)	90, 302, 595, 681, 695
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	2 cut(s)	244, 303
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	4 cut(s)	149, 170, 686, 727
Hpy188III	TCNNGA	5 cut(s)	36, 114, 489, 557, 611
Hpy8I	GTNNAC	1 cut(s)	475
HpyAV	CCTTC	6 cut(s)	33, 76, 111, 519, 566, 663
HpyCH4V	TGCA	6 cut(s)	274, 366, 407, 464, 524, 713
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 266, 275, 284
HpyF3I	CTNAG	2 cut(s)	336, 416
Hsp92II	CATG	3 cut(s)	16, 503, 843
HspAI	GCGC	1 cut(s)	817
Kzo9I	GATC	3 cut(s)	170, 425, 668
LguI	GCTCTTC	1 cut(s)	12
MaeI	CTAG	3 cut(s)	87, 189, 636
MaeIII	GTNAC	1 cut(s)	309
MalI	GATC	3 cut(s)	172, 427, 670
MboI	GATC	3 cut(s)	170, 425, 668
MluCI	AATT	6 cut(s)	109, 331, 450, 495, 552, 716
MlyI	GAGTC	2 cut(s)	589, 689
MnlI	CCTC	7 cut(s)	145, 272, 381, 477, 618, 642, 727
MroXI	GAANNNNTTC	1 cut(s)	121
MseI	TTAA	3 cut(s)	218, 674, 719
MspCI	CTTAAG	1 cut(s)	217
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	2 cut(s)	207, 236
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	4 cut(s)	83, 266, 275, 284
NciI	CCSGG	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	12
NdeI	CATATG	2 cut(s)	28, 133
NdeII	GATC	3 cut(s)	170, 425, 668
NlaIII	CATG	3 cut(s)	16, 503, 843
NlaIV	GGNNCC	1 cut(s)	387
NmuCI	GTSAC	1 cut(s)	309
NspV	TTCGAA	1 cut(s)	433
PciSI	GCTCTTC	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	121
PfeI	GAWTC	3 cut(s)	90, 302, 681
PflMI	CCANNNNNTGG	1 cut(s)	29
PleI	GAGTC	2 cut(s)	589, 689
PpsI	GAGTC	2 cut(s)	589, 689
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	387
RsaI	GTAC	2 cut(s)	193, 857
RsaNI	GTAC	2 cut(s)	192, 856
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	218, 674, 719
Sau3AI	GATC	3 cut(s)	170, 425, 668
ScaI	AGTACT	1 cut(s)	193
SchI	GAGTC	2 cut(s)	589, 689
ScrFI	CCNGG	2 cut(s)	207, 236
SfuI	TTCGAA	1 cut(s)	433
SmlI	CTYRAG	2 cut(s)	217, 487
SmoI	CTYRAG	2 cut(s)	217, 487
Sse9I	AATT	6 cut(s)	109, 331, 450, 495, 552, 716
SspMI	CTAG	3 cut(s)	87, 189, 636
StyD4I	CCNGG	2 cut(s)	205, 234
StyI	CCWWGG	1 cut(s)	12
TaqI	TCGA	2 cut(s)	231, 433
TasI	AATT	6 cut(s)	109, 331, 450, 495, 552, 716
TatI	WGTACW	1 cut(s)	191
TfiI	GAWTC	3 cut(s)	90, 302, 681
Tru1I	TTAA	3 cut(s)	218, 674, 719
Tru9I	TTAA	3 cut(s)	218, 674, 719
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	1 cut(s)	309
Tsp45I	GTSAC	1 cut(s)	309
TspDTI	ATGAA	4 cut(s)	120, 360, 488, 744
TspRI	CASTG	1 cut(s)	262
Van91I	CCANNNNNTGG	1 cut(s)	29
Vha464I	CTTAAG	1 cut(s)	217
XagI	CCTNNNNNAGG	1 cut(s)	375
XapI	RAATTY	2 cut(s)	109, 331
XmnI	GAANNNNTTC	1 cut(s)	121
XspI	CTAG	3 cut(s)	87, 189, 636
ZrmI	AGTACT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.