Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006085

Physical Location & Seq

Genomic Coordinates Forward (+)

5461872 .. 5465086

Gene Structure 3215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g07490.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGATCTCCACCATGGAAGACTCACCGTCCGGTTCGAGAAGGCGAGACGAGCCGGAGTTCAGCCTGAGAGAGTGGGCAGTGAAGGCCCGAATCAGCCGCGAAAACCTGAATTCCAGAAGGTTTTCAGCTTCCTATATTCCAAGCTTCAGAGAGGACACAAGTGGTCCAAGTTTCAGAGAGGGCACAAGGTCTTTCAGATCAAACATTACAATCTCCAGCACTGCTTCTTCCCCTGGCTATAACTTAAGAGATGAAATCGACCCGGCAACGTACTCATTCACCACAGCCCTCAAAGCATTGCAGGCGAGGTCAGCTTATCATAGTTGGGAAACGTTATCACCAGAAGGGTTTGTTTTGAATTCAAAGTGGAATGAAGCAGAGAAATACATATGCAACCCTCTATCAGGGCAGGTTCCGATGGAGTGTTTATCTGCAAAAACACTTAGCGGAAGATCGTTTCGCAACGCAACGAATCGATTCACAATGTCTGCACCTCTTGTTTACTCTTCCCACACGAGACCAATCCATACAACCAACATTGCCAAGCCTTCTTCTAATCCTACAAAAGAAGATTTGGCTCCTCAATTTCCAGTTCCAGCAAAGAAAACAGAGGGCATGACTAGAGATGTTGGGACTCAAAGCACTCCTCCTGATTGGGGTTCAAGTAGTAGTCCTAGCTCTACTTCAACCCCTCCGATCGTAGAGAGATCGTTAAACCGATTTCGAGGAGGAGATTCGTCTAAAACAAGTGCAAAATTAAAATCTGACGACGAGGTGGAAGTGAAAGATACAAAAGAAACAGAAAGCGAAAAGGAAGAGCAGAAGTGCAGGCAAGGTGGGTGCTTGTCATGGATGAGAAAAAGGTATAGAGAGAAACACAAACCAAAAAACAAGAAGAATATCTTTCTTTCTCATCTGAATCTCAAAGCGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

312

Amino Acids

34.89

Weight (kDa)

9.61

Isoelectric Point (pI)

64.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02500 AT3G02500 AT3G02500 AT5G16030 AT5G16030 AT5G16030 AT5G16030 AT5G16030
fragaria_vesca	FvH4_6g45350 FvH4_6g45350
malus_domestica	MD09G1084800.v1.1 MD17G1074300.v1.1
prunus_persica	Prupe.3G239700_v2.0.a1
pyrus_communis	pycom17g07490
rosa_chinensis	RchiOBHm_Chr2g0163131 RchiOBHm_Chr4g0404491
rosa_laevigata	RLG00000021376
rosa_multiflora	Rmu_sc0002045.1_g000042
rosa_roxburghii	Rroxscaffold_2G00087520
rosa_rugosa	Rorug02G0500800
rosa_samantha	Rh2AG567100 Rh2BG579400 Rh2CG549300 Rh2DG589700 Rh5BG309300 Rh5DG319800
rosa_wichuraiana	Rw2G046960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	400
AccII	CGCG	1 cut(s)	99
AciI	CCGC	2 cut(s)	97, 447
AclI	AACGTT	1 cut(s)	332
AcsI	RAATTY	2 cut(s)	109, 358
AcuI	CTGAAG	1 cut(s)	130
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	404, 656
AflII	CTTAAG	1 cut(s)	244
AgsI	TTSAA	4 cut(s)	358, 363, 663, 687
AhdI	GACNNNNNGTC	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	4 cut(s)	128, 144, 314, 678
AluI	AGCT	4 cut(s)	128, 144, 314, 678
Alw26I	GTCTC	2 cut(s)	39, 511
AoxI	GGCC	1 cut(s)	84
ApoI	RAATTY	2 cut(s)	109, 358
Asp700I	GAANNNNTTC	2 cut(s)	121, 476
AspS9I	GGNCC	2 cut(s)	85, 164
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	3 cut(s)	15, 271, 330
AvaII	GGWCC	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	185
BauI	CACGAG	1 cut(s)	514
BbsI	GAAGAC	1 cut(s)	24
BccI	CCATC	1 cut(s)	412
BciT130I	CCWGG	1 cut(s)	234
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	2 cut(s)	39, 511
BfaI	CTAG	2 cut(s)	621, 675
BfrI	CTTAAG	1 cut(s)	244
BfuAI	ACCTGC	1 cut(s)	400
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
Bme1390I	CCNGG	2 cut(s)	234, 263
Bme18I	GGWCC	1 cut(s)	164
BmeRI	GACNNNNNGTC	1 cut(s)	25
BmgT120I	GGNCC	2 cut(s)	85, 164
BmiI	GGNNCC	2 cut(s)	414, 579
BmrFI	CCNGG	2 cut(s)	234, 263
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	199
BpuMI	CCSGG	1 cut(s)	263
Bsa29I	ATCGAT	1 cut(s)	475
BsaI	GGTCTC	1 cut(s)	511
BsaJI	CCNNGG	2 cut(s)	12, 232
BsaWI	WCCGGW	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 656
Bse1I	ACTGG	1 cut(s)	590
Bse3DI	GCAATG	2 cut(s)	296, 537
BseBI	CCWGG	1 cut(s)	234
BseCI	ATCGAT	1 cut(s)	475
BseDI	CCNNGG	2 cut(s)	12, 232
BseGI	GGATG	1 cut(s)	858
BseLI	CCNNNNNNNGG	2 cut(s)	404, 656
BseMI	GCAATG	2 cut(s)	296, 537
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	590
BseRI	GAGGAG	4 cut(s)	570, 636, 741, 744
BseSI	GKGCMC	1 cut(s)	185
BsgI	GTGCAG	2 cut(s)	474, 847
Bsh1236I	CGCG	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	699
BshFI	GGCC	1 cut(s)	86
BshVI	ATCGAT	1 cut(s)	475
BsiEI	CGRYCG	1 cut(s)	699
BsiSI	CCGG	3 cut(s)	30, 53, 263
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	2 cut(s)	404, 656
BsmAI	GTCTC	2 cut(s)	39, 511
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	646
BsnI	GGCC	1 cut(s)	86
Bso31I	GGTCTC	1 cut(s)	511
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	5 cut(s)	3, 197, 452, 696, 707
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	2 cut(s)	97, 447
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	57
BspDI	ATCGAT	1 cut(s)	475
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	414, 579
BspMI	ACCTGC	1 cut(s)	400
BspQI	GCTCTTC	1 cut(s)	810
BspTI	CTTAAG	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	511
BsrDI	GCAATG	2 cut(s)	296, 537
BsrI	ACTGG	1 cut(s)	590
BssECI	CCNNGG	2 cut(s)	12, 232
BssMI	GATC	5 cut(s)	3, 197, 452, 696, 707
BssSI	CACGAG	1 cut(s)	514
BssT1I	CCWWGG	1 cut(s)	12
Bst2BI	CACGAG	1 cut(s)	514
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	27
Bst6I	CTCTTC	2 cut(s)	511, 810
BstAFI	CTTAAG	1 cut(s)	244
BstC8I	GCNNGC	2 cut(s)	303, 830
BstDEI	CTNAG	2 cut(s)	65, 443
BstDSI	CCRYGG	1 cut(s)	12
BstENI	CCTNNNNNAGG	1 cut(s)	402
BstF5I	GGATG	1 cut(s)	858
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	5 cut(s)	6, 200, 455, 699, 710
BstMAI	GTCTC	2 cut(s)	39, 511
BstMBI	GATC	5 cut(s)	3, 197, 452, 696, 707
BstMCI	CGRYCG	1 cut(s)	699
BstMWI	GCNNNNNNNGC	5 cut(s)	49, 83, 293, 302, 311
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	2 cut(s)	232, 261
BstSLI	GKGCMC	1 cut(s)	185
BstUI	CGCG	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	24
Bsu15I	ATCGAT	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	86
BsuTUI	ATCGAT	1 cut(s)	475
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	858
BtsI	GCAGTG	2 cut(s)	84, 219
BtsIMutI	CAGTG	2 cut(s)	84, 219
BveI	ACCTGC	1 cut(s)	400
Cac8I	GCNNGC	2 cut(s)	303, 830
Cfr13I	GGNCC	2 cut(s)	85, 164
ClaI	ATCGAT	1 cut(s)	475
CseI	GACGC	1 cut(s)	918
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	3 cut(s)	13, 616, 849
CviQI	GTAC	1 cut(s)	271
DdeI	CTNAG	2 cut(s)	65, 443
DpnI	GATC	5 cut(s)	5, 199, 454, 698, 709
DpnII	GATC	5 cut(s)	3, 197, 452, 696, 707
DriI	GACNNNNNGTC	1 cut(s)	25
Eam1104I	CTCTTC	2 cut(s)	511, 810
Eam1105I	GACNNNNNGTC	1 cut(s)	25
EarI	CTCTTC	2 cut(s)	511, 810
Eco130I	CCWWGG	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	402
EcoRI	GAATTC	2 cut(s)	109, 358
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	3 cut(s)	16, 619, 852
FalI	AAGNNNNNCTT	2 cut(s)	887, 919
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	3 cut(s)	12, 615, 848
FauNDI	CATATG	1 cut(s)	389
Fnu4HI	GCNGC	1 cut(s)	97
FokI	GGATG	1 cut(s)	865
Fsp4HI	GCNGC	1 cut(s)	97
FspBI	CTAG	2 cut(s)	621, 675
GluI	GCNGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	3 cut(s)	30, 53, 263
HgaI	GACGC	1 cut(s)	918
Hin1II	CATG	3 cut(s)	16, 619, 852
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	7 cut(s)	20, 90, 472, 477, 634, 734, 919
HpaII	CCGG	3 cut(s)	30, 53, 263
HphI	GGTGA	3 cut(s)	15, 271, 330
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	7 cut(s)	149, 176, 197, 417, 696, 766, 918
Hpy188III	TCNNGA	4 cut(s)	36, 114, 650, 933
Hpy8I	GTNNAC	1 cut(s)	502
Hpy99I	CGWCG	1 cut(s)	773
HpyAV	CCTTC	5 cut(s)	33, 76, 111, 338, 558
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4IV	ACGT	2 cut(s)	269, 332
HpyCH4V	TGCA	6 cut(s)	301, 393, 434, 491, 752, 828
HpyF10VI	GCNNNNNNNGC	5 cut(s)	49, 83, 293, 302, 311
HpyF3I	CTNAG	2 cut(s)	65, 443
HpySE526I	ACGT	2 cut(s)	269, 332
Hsp92II	CATG	3 cut(s)	16, 619, 852
Kzo9I	GATC	5 cut(s)	3, 197, 452, 696, 707
LguI	GCTCTTC	1 cut(s)	810
LmnI	GCTCC	1 cut(s)	583
MaeI	CTAG	2 cut(s)	621, 675
MaeII	ACGT	2 cut(s)	269, 332
MalI	GATC	5 cut(s)	5, 199, 454, 698, 709
MboI	GATC	5 cut(s)	3, 197, 452, 696, 707
MboII	GAAGA	8 cut(s)	29, 219, 462, 498, 543, 581, 827, 907
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	4 cut(s)	109, 358, 584, 755
MlyI	GAGTC	2 cut(s)	14, 628
MroXI	GAANNNNTTC	2 cut(s)	121, 476
MseI	TTAA	3 cut(s)	245, 713, 758
MspCI	CTTAAG	1 cut(s)	244
MspI	CCGG	3 cut(s)	30, 53, 263
MspR9I	CCNGG	2 cut(s)	234, 263
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	5 cut(s)	49, 83, 293, 302, 311
NciI	CCSGG	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	12
NdeI	CATATG	1 cut(s)	389
NdeII	GATC	5 cut(s)	3, 197, 452, 696, 707
NlaIII	CATG	3 cut(s)	16, 619, 852
NlaIV	GGNNCC	2 cut(s)	414, 579
PciSI	GCTCTTC	1 cut(s)	810
PdmI	GAANNNNTTC	2 cut(s)	121, 476
PfeI	GAWTC	5 cut(s)	90, 472, 477, 734, 919
PkrI	GCNGC	1 cut(s)	98
Ple19I	CGATCG	1 cut(s)	699
PleI	GAGTC	2 cut(s)	14, 628
PpsI	GAGTC	2 cut(s)	14, 628
Psp1406I	AACGTT	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	414, 579
PspPI	GGNCC	2 cut(s)	85, 164
PvuI	CGATCG	1 cut(s)	699
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SapI	GCTCTTC	1 cut(s)	810
SaqAI	TTAA	3 cut(s)	245, 713, 758
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	5 cut(s)	3, 197, 452, 696, 707
Sau96I	GGNCC	2 cut(s)	85, 164
SchI	GAGTC	2 cut(s)	14, 628
ScrFI	CCNGG	2 cut(s)	234, 263
SduI	GDGCHC	1 cut(s)	185
SinI	GGWCC	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	4 cut(s)	109, 358, 584, 755
SsiI	CCGC	2 cut(s)	97, 447
SspMI	CTAG	2 cut(s)	621, 675
StyD4I	CCNGG	2 cut(s)	232, 261
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	27
TaiI	ACGT	2 cut(s)	272, 335
TaqI	TCGA	4 cut(s)	35, 258, 475, 724
TasI	AATT	4 cut(s)	109, 358, 584, 755
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	5 cut(s)	90, 472, 477, 734, 919
Tru1I	TTAA	3 cut(s)	245, 713, 758
Tru9I	TTAA	3 cut(s)	245, 713, 758
TscAI	CASTG	2 cut(s)	84, 226
TspDTI	ATGAA	2 cut(s)	267, 387
TspRI	CASTG	2 cut(s)	84, 226
Vha464I	CTTAAG	1 cut(s)	244
VpaK11BI	GGWCC	1 cut(s)	164
XagI	CCTNNNNNAGG	1 cut(s)	402
XapI	RAATTY	2 cut(s)	109, 358
XmnI	GAANNNNTTC	2 cut(s)	121, 476
XspI	CTAG	2 cut(s)	621, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.