Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006085

Physical Location & Seq

Genomic Coordinates Reverse (-)

74375704 .. 74377985

Gene Structure 2282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G046960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGAAGAATCCCCATATAGTTCTAGGGGACAAGACGAACCCGAGTTCAGCTTGAGAGATTGGGCTCTCAAGGCTAGAGGAATCAGCCGCGAAAACACGAATTCCAGAAGGTTCTCAGCATCCTACATTAGAAGCTTTAGAGAAGACACAAGGTCTTTCAGATCAAACATTACCATCTCCAGCACTGCTTCTTCTCCTGGCTATGCCTTAAGAGATGAAATTGACCCTGCAACTTACTCATTCACCACAGCCCTCAAAGCATTGCAAGCAAGGTCTGCCTACAATAGTTGGGAGGCTTTATCCCCAGATGGGTTTGCTTTACATTCAAAGTGGAATGAAGCAGAGAAATACATATGCAACCCTCTTTCAGGACAAGTCCCAATGGAGTGTTTATCTGCAAAAACACTTAGTGGAAGATCGTTTCGAAACATAACGAATCGTATCACAATGTCTGCACCTCTTGTTTACTCTTCTCACACTAGGCCAATCCATACCACCAAGCCTTCTTATTCAACCAAAGAAGACTCGGCTCGTCAATTCCCAATTCCAGAAAAGAAAAATGAGGGTATGACCAGAGATGTTGGAACTCAAAGCACTCCTCCTGATATCAGTTCTAGCAGTCTTAGCTCTGCTTCAACTCCTCCCATTGTAGAAAGATCATTAAATCGATTTCGTGGGGAGATTCACCAAATTCAAATTCAAATTCAAATTCAAAACCAAAATCTGAAGAAGAGGTTGAAGAAGAAGAGGTGTGTTTTAGATATTTCTCTATCAATGCTAGAAGTTAAGCTATTTTGTTGTAGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

30.39

Weight (kDa)

9.55

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02500 AT3G02500 AT3G02500 AT5G16030 AT5G16030 AT5G16030 AT5G16030 AT5G16030
fragaria_vesca	FvH4_6g45350 FvH4_6g45350
malus_domestica	MD09G1084800.v1.1 MD17G1074300.v1.1
prunus_persica	Prupe.3G239700_v2.0.a1
pyrus_communis	pycom17g07490
rosa_chinensis	RchiOBHm_Chr2g0163131 RchiOBHm_Chr4g0404491
rosa_laevigata	RLG00000021376
rosa_multiflora	Rmu_sc0002045.1_g000042
rosa_roxburghii	Rroxscaffold_2G00087520
rosa_rugosa	Rorug02G0500800
rosa_samantha	Rh2AG567100 Rh2BG579400 Rh2CG549300 Rh2DG589700 Rh5BG309300 Rh5DG319800
rosa_wichuraiana	Rw2G046960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	90
AciI	CCGC	1 cut(s)	88
AcsI	RAATTY	5 cut(s)	100, 690, 696, 702, 708
AcuI	CTGAAG	1 cut(s)	746
AdeI	CACNNNGTG	1 cut(s)	410
AfiI	CCNNNNNNNGG	2 cut(s)	309, 368
AflII	CTTAAG	1 cut(s)	208
AgsI	TTSAA	8 cut(s)	327, 513, 636, 695, 701, 707, 713, 739
AhdI	GACNNNNNGTC	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	681, 713
AluBI	AGCT	5 cut(s)	51, 135, 627, 790, 804
AluI	AGCT	5 cut(s)	51, 135, 627, 790, 804
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	482
ApoI	RAATTY	5 cut(s)	100, 690, 696, 702, 708
AsuHPI	GGTGA	2 cut(s)	235, 677
AsuII	TTCGAA	1 cut(s)	424
AvaI	CYCGRG	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	67
BbsI	GAAGAC	2 cut(s)	150, 528
BccI	CCATC	2 cut(s)	182, 302
BciT130I	CCWGG	1 cut(s)	198
BfaI	CTAG	5 cut(s)	24, 75, 480, 615, 779
BfrI	CTTAAG	1 cut(s)	208
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	198
BmeRI	GACNNNNNGTC	1 cut(s)	151
BmeT110I	CYCGRG	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	128
BpiI	GAAGAC	2 cut(s)	150, 528
BpmI	CTGGAG	1 cut(s)	163
Bpu14I	TTCGAA	1 cut(s)	424
BpuEI	CTTGAG	2 cut(s)	53, 73
Bsa29I	ATCGAT	1 cut(s)	667
Bsc4I	CCNNNNNNNGG	2 cut(s)	309, 368
Bse3DI	GCAATG	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	198
BseCI	ATCGAT	1 cut(s)	667
BseGI	GGATG	1 cut(s)	119
BseLI	CCNNNNNNNGG	2 cut(s)	309, 368
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	129
BseRI	GAGGAG	2 cut(s)	588, 630
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	484
BshVI	ATCGAT	1 cut(s)	667
BsiHKCI	CYCGRG	1 cut(s)	41
BslFI	GGGAC	2 cut(s)	42, 362
BslI	CCNNNNNNNGG	2 cut(s)	309, 368
BsmFI	GGGAC	2 cut(s)	42, 362
BsnI	GGCC	1 cut(s)	484
BsoBI	CYCGRG	1 cut(s)	41
Bsp119I	TTCGAA	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	3 cut(s)	161, 416, 656
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	1 cut(s)	128
BspDI	ATCGAT	1 cut(s)	667
BspFNI	CGCG	1 cut(s)	90
BspT104I	TTCGAA	1 cut(s)	424
BspTI	CTTAAG	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	260
BssMI	GATC	3 cut(s)	161, 416, 656
Bst2UI	CCWGG	1 cut(s)	198
Bst6I	CTCTTC	3 cut(s)	475, 725, 740
BstAFI	CTTAAG	1 cut(s)	208
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstBI	TTCGAA	1 cut(s)	424
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	3 cut(s)	115, 407, 623
BstENI	CCTNNNNNAGG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	119
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	3 cut(s)	164, 419, 659
BstMBI	GATC	3 cut(s)	161, 416, 656
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 257, 266, 275, 624
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	1 cut(s)	196
BstUI	CGCG	1 cut(s)	90
BstV2I	GAAGAC	2 cut(s)	150, 528
Bsu15I	ATCGAT	1 cut(s)	667
BsuRI	GGCC	1 cut(s)	484
BsuTUI	ATCGAT	1 cut(s)	667
BtsCI	GGATG	1 cut(s)	119
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	267
ClaI	ATCGAT	1 cut(s)	667
DdeI	CTNAG	3 cut(s)	115, 407, 623
DpnI	GATC	3 cut(s)	163, 418, 658
DpnII	GATC	3 cut(s)	161, 416, 656
DraIII	CACNNNGTG	1 cut(s)	410
DriI	GACNNNNNGTC	1 cut(s)	151
Eam1104I	CTCTTC	3 cut(s)	475, 725, 740
Eam1105I	GACNNNNNGTC	1 cut(s)	151
EarI	CTCTTC	3 cut(s)	475, 725, 740
Eco24I	GRGCYC	1 cut(s)	67
Eco32I	GATATC	1 cut(s)	607
Eco57I	CTGAAG	1 cut(s)	746
Eco88I	CYCGRG	1 cut(s)	41
EcoNI	CCTNNNNNAGG	1 cut(s)	366
EcoRI	GAATTC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	196
EcoRV	GATATC	1 cut(s)	607
EcoT38I	GRGCYC	1 cut(s)	67
FaiI	YATR	8 cut(s)	16, 18, 204, 353, 355, 431, 492, 569
FaqI	GGGAC	2 cut(s)	42, 362
FauNDI	CATATG	1 cut(s)	353
Fnu4HI	GCNGC	1 cut(s)	88
FokI	GGATG	1 cut(s)	106
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	5 cut(s)	24, 75, 480, 615, 779
GluI	GCNGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	163
HaeIII	GGCC	1 cut(s)	484
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	5 cut(s)	8, 81, 436, 524, 682
HphI	GGTGA	2 cut(s)	235, 677
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	2 cut(s)	161, 726
Hpy188III	TCNNGA	4 cut(s)	105, 369, 548, 602
Hpy8I	GTNNAC	1 cut(s)	466
HpyAV	CCTTC	2 cut(s)	102, 513
HpyCH4V	TGCA	5 cut(s)	230, 265, 357, 398, 455
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 257, 266, 275, 624
HpyF3I	CTNAG	3 cut(s)	115, 407, 623
Kzo9I	GATC	3 cut(s)	161, 416, 656
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	5 cut(s)	24, 75, 480, 615, 779
MalI	GATC	3 cut(s)	163, 418, 658
MboI	GATC	3 cut(s)	161, 416, 656
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	8 cut(s)	100, 219, 536, 543, 690, 696, 702, 708
MlyI	GAGTC	1 cut(s)	518
MmeI	TCCRAC	1 cut(s)	562
MseI	TTAA	3 cut(s)	209, 662, 786
MspCI	CTTAAG	1 cut(s)	208
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	5 cut(s)	71, 257, 266, 275, 624
NdeI	CATATG	1 cut(s)	353
NdeII	GATC	3 cut(s)	161, 416, 656
NmeAIII	GCCGAG	1 cut(s)	506
NspV	TTCGAA	1 cut(s)	424
PfeI	GAWTC	4 cut(s)	8, 81, 436, 682
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
SaqAI	TTAA	3 cut(s)	209, 662, 786
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	3 cut(s)	161, 416, 656
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	67
SfaNI	GCATC	1 cut(s)	128
SfuI	TTCGAA	1 cut(s)	424
SmlI	CTYRAG	3 cut(s)	52, 68, 208
SmoI	CTYRAG	3 cut(s)	52, 68, 208
Sse9I	AATT	8 cut(s)	100, 219, 536, 543, 690, 696, 702, 708
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	5 cut(s)	24, 75, 480, 615, 779
StyD4I	CCNGG	1 cut(s)	196
TaqI	TCGA	2 cut(s)	424, 667
TasI	AATT	8 cut(s)	100, 219, 536, 543, 690, 696, 702, 708
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	4 cut(s)	8, 81, 436, 682
Tru1I	TTAA	3 cut(s)	209, 662, 786
Tru9I	TTAA	3 cut(s)	209, 662, 786
TscAI	CASTG	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	231, 351
TspRI	CASTG	1 cut(s)	190
Vha464I	CTTAAG	1 cut(s)	208
XagI	CCTNNNNNAGG	1 cut(s)	366
XapI	RAATTY	5 cut(s)	100, 690, 696, 702, 708
XspI	CTAG	5 cut(s)	24, 75, 480, 615, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.