Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006085

Physical Location & Seq

Genomic Coordinates Forward (+)

6023494 .. 6027103

Gene Structure 3610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1074300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGATCTCCACCATGGAAGACTCACCGTACGGTTCGAGAAGGCGAGACGAGCCGGAGTTCAGCCTGAGAGAGTGGGCAGTGAAGGCCCGGATCAGCCGCGAAAACCTGAATTCCAGAAGGTTTTCAGCTTCCTATATTCCAAGCTTCAGAGAGGACACAAGGTCTTTCAGATCAAACATTACAATCTCCAGCACTGCTTCTTCCCCTGGCTATAACTCAAGAGATGAAATCGACCCGGCAACGTACTCATTCACCACAGCTCTCAAAGCATTGCAGGCAAGGTCAGCTTATCATAGTTGGGAAGCGTTATCACCAGAAGGGTTTGTTTTGAATTCAAAGTGGAATGAAGCAGAGAAATACATAAGCAACCCTCTATCAGGGCAGGTTCCGATGGAGTGTTTATCTGCAAAAACACTTAGCGGAAGATCGTTTCGCAACGCAACGAATCGAATCACAATGTCTGCACCTCTTGTTTACTCTTCCCACACGAGACCAATCCATACAACCAACATTGCCAAGCCTTCTTTTAATCCTACAAAAGAAGATTTGGCTCCTCAATTTCCAGTTCCAGCAAAGAAAACAGAGGGCATGACTAGAGATGTTGGGACTCAAAGCACTCCTCATGATTTGAGTTCAAGTAGTAGTCCTAGCTCTACTTCAACCCCTCCGATCGTAGAGAGATCGTTAAATCGATTTCGAGGAGGAGATTCGTCTAGAACAAGTGCAAAATTAAAATCTGACTACGAGGTGGAAGTGAAAGATACAAAAGAAACAGAAAGCGAAAAAGAAGAGCAAAAGTGCAGGCAAGGTGGGTGCTTGTCATGGATGAGAAAAAGGTATAGAGAGAAACACAAACCAAAAAGCAAGAAGAATATCTTTCTTTCTCATCTGAATCTCAAAGCGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

34.05

Weight (kDa)

9.7

Isoelectric Point (pI)

64.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02500 AT3G02500 AT3G02500 AT5G16030 AT5G16030 AT5G16030 AT5G16030 AT5G16030
fragaria_vesca	FvH4_6g45350 FvH4_6g45350
malus_domestica	MD09G1084800.v1.1 MD17G1074300.v1.1
prunus_persica	Prupe.3G239700_v2.0.a1
pyrus_communis	pycom17g07490
rosa_chinensis	RchiOBHm_Chr2g0163131 RchiOBHm_Chr4g0404491
rosa_laevigata	RLG00000021376
rosa_multiflora	Rmu_sc0002045.1_g000042
rosa_roxburghii	Rroxscaffold_2G00087520
rosa_rugosa	Rorug02G0500800
rosa_samantha	Rh2AG567100 Rh2BG579400 Rh2CG549300 Rh2DG589700 Rh5BG309300 Rh5DG319800
rosa_wichuraiana	Rw2G046960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	373
AccII	CGCG	1 cut(s)	99
AciI	CCGC	2 cut(s)	97, 420
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	2 cut(s)	109, 331
AcuI	CTGAAG	1 cut(s)	130
AfaI	GTAC	2 cut(s)	29, 245
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	4 cut(s)	331, 336, 636, 660
AhdI	GACNNNNNGTC	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	5 cut(s)	128, 144, 260, 287, 651
AluI	AGCT	5 cut(s)	128, 144, 260, 287, 651
Alw26I	GTCTC	2 cut(s)	39, 484
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	1 cut(s)	84
ApoI	RAATTY	2 cut(s)	109, 331
Asp700I	GAANNNNTTC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	85
AsuC2I	CCSGG	2 cut(s)	88, 236
AsuHPI	GGTGA	3 cut(s)	15, 244, 303
BauI	CACGAG	1 cut(s)	487
BbsI	GAAGAC	1 cut(s)	24
BccI	CCATC	1 cut(s)	385
BciT130I	CCWGG	1 cut(s)	207
BcnI	CCSGG	2 cut(s)	88, 236
BcoDI	GTCTC	2 cut(s)	39, 484
BfaI	CTAG	3 cut(s)	594, 648, 714
BfuAI	ACCTGC	1 cut(s)	373
BisI	GCNGC	1 cut(s)	97
BlsI	GCNGC	1 cut(s)	98
Bme1390I	CCNGG	3 cut(s)	88, 207, 236
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	387, 552
BmrFI	CCNGG	3 cut(s)	88, 207, 236
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	172
BpuEI	CTTGAG	1 cut(s)	202
BpuMI	CCSGG	2 cut(s)	88, 236
Bsa29I	ATCGAT	1 cut(s)	691
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	2 cut(s)	12, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse1I	ACTGG	1 cut(s)	563
Bse3DI	GCAATG	2 cut(s)	269, 510
BseBI	CCWGG	1 cut(s)	207
BseCI	ATCGAT	1 cut(s)	691
BseDI	CCNNGG	2 cut(s)	12, 205
BseGI	GGATG	1 cut(s)	831
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMI	GCAATG	2 cut(s)	269, 510
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	563
BseRI	GAGGAG	4 cut(s)	543, 609, 714, 717
BsgI	GTGCAG	2 cut(s)	447, 820
Bsh1236I	CGCG	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	672
BshFI	GGCC	1 cut(s)	86
BshVI	ATCGAT	1 cut(s)	691
BsiEI	CGRYCG	1 cut(s)	672
BsiSI	CCGG	3 cut(s)	53, 88, 236
BsiWI	CGTACG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	619
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmAI	GTCTC	2 cut(s)	39, 484
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	619
BsnI	GGCC	1 cut(s)	86
Bso31I	GGTCTC	1 cut(s)	484
Bsp143I	GATC	6 cut(s)	3, 90, 170, 425, 669, 680
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	2 cut(s)	97, 420
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	57
BspDI	ATCGAT	1 cut(s)	691
BspFNI	CGCG	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	622
BspLI	GGNNCC	2 cut(s)	387, 552
BspMI	ACCTGC	1 cut(s)	373
BspPI	GGATC	1 cut(s)	98
BspQI	GCTCTTC	1 cut(s)	783
BspTNI	GGTCTC	1 cut(s)	484
BsrDI	GCAATG	2 cut(s)	269, 510
BsrI	ACTGG	1 cut(s)	563
BssECI	CCNNGG	2 cut(s)	12, 205
BssMI	GATC	6 cut(s)	3, 90, 170, 425, 669, 680
BssSI	CACGAG	1 cut(s)	487
BssT1I	CCWWGG	1 cut(s)	12
Bst2BI	CACGAG	1 cut(s)	487
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	27, 32
Bst6I	CTCTTC	2 cut(s)	484, 783
BstC8I	GCNNGC	2 cut(s)	276, 803
BstDEI	CTNAG	2 cut(s)	65, 416
BstDSI	CCRYGG	1 cut(s)	12
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	1 cut(s)	831
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	6 cut(s)	6, 93, 173, 428, 672, 683
BstMAI	GTCTC	2 cut(s)	39, 484
BstMBI	GATC	6 cut(s)	3, 90, 170, 425, 669, 680
BstMCI	CGRYCG	1 cut(s)	672
BstMWI	GCNNNNNNNGC	5 cut(s)	49, 83, 266, 275, 284
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	3 cut(s)	86, 205, 234
BstUI	CGCG	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	24
Bsu15I	ATCGAT	1 cut(s)	691
BsuRI	GGCC	1 cut(s)	86
BsuTUI	ATCGAT	1 cut(s)	691
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	831
BtsI	GCAGTG	2 cut(s)	84, 192
BtsIMutI	CAGTG	2 cut(s)	84, 192
BveI	ACCTGC	1 cut(s)	373
Cac8I	GCNNGC	2 cut(s)	276, 803
CciI	TCATGA	1 cut(s)	622
Cfr13I	GGNCC	1 cut(s)	85
ClaI	ATCGAT	1 cut(s)	691
CseI	GACGC	1 cut(s)	891
Csp6I	GTAC	2 cut(s)	28, 244
CviAII	CATG	4 cut(s)	13, 589, 623, 822
CviQI	GTAC	2 cut(s)	28, 244
DdeI	CTNAG	2 cut(s)	65, 416
DpnI	GATC	6 cut(s)	5, 92, 172, 427, 671, 682
DpnII	GATC	6 cut(s)	3, 90, 170, 425, 669, 680
DriI	GACNNNNNGTC	1 cut(s)	160
Eam1104I	CTCTTC	2 cut(s)	484, 783
Eam1105I	GACNNNNNGTC	1 cut(s)	160
EarI	CTCTTC	2 cut(s)	484, 783
Eco130I	CCWWGG	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoRI	GAATTC	2 cut(s)	109, 331
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	4 cut(s)	16, 592, 626, 825
FalI	AAGNNNNNCTT	4 cut(s)	271, 303, 860, 892
FaqI	GGGAC	1 cut(s)	619
FatI	CATG	4 cut(s)	12, 588, 622, 821
Fnu4HI	GCNGC	1 cut(s)	97
FokI	GGATG	1 cut(s)	838
Fsp4HI	GCNGC	1 cut(s)	97
FspBI	CTAG	3 cut(s)	594, 648, 714
GluI	GCNGC	1 cut(s)	97
GsuI	CTGGAG	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	3 cut(s)	53, 88, 236
HgaI	GACGC	1 cut(s)	891
Hin1II	CATG	4 cut(s)	16, 592, 626, 825
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	6 cut(s)	20, 445, 450, 607, 707, 892
HpaII	CCGG	3 cut(s)	53, 88, 236
HphI	GGTGA	3 cut(s)	15, 244, 303
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	6 cut(s)	149, 170, 390, 669, 739, 891
Hpy188III	TCNNGA	6 cut(s)	36, 114, 219, 623, 714, 906
Hpy8I	GTNNAC	1 cut(s)	475
HpyAV	CCTTC	5 cut(s)	33, 76, 111, 311, 531
HpyCH4III	ACNGT	2 cut(s)	27, 32
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	5 cut(s)	274, 407, 464, 725, 801
HpyF10VI	GCNNNNNNNGC	5 cut(s)	49, 83, 266, 275, 284
HpyF3I	CTNAG	2 cut(s)	65, 416
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	4 cut(s)	16, 592, 626, 825
Kzo9I	GATC	6 cut(s)	3, 90, 170, 425, 669, 680
LguI	GCTCTTC	1 cut(s)	783
LmnI	GCTCC	1 cut(s)	556
MaeI	CTAG	3 cut(s)	594, 648, 714
MaeII	ACGT	1 cut(s)	242
MalI	GATC	6 cut(s)	5, 92, 172, 427, 671, 682
MboI	GATC	6 cut(s)	3, 90, 170, 425, 669, 680
MboII	GAAGA	7 cut(s)	29, 192, 435, 471, 554, 800, 880
MluCI	AATT	4 cut(s)	109, 331, 557, 728
MlyI	GAGTC	2 cut(s)	14, 601
MroXI	GAANNNNTTC	1 cut(s)	121
MseI	TTAA	3 cut(s)	528, 686, 731
MspI	CCGG	3 cut(s)	53, 88, 236
MspR9I	CCNGG	3 cut(s)	88, 207, 236
MvaI	CCWGG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	5 cut(s)	49, 83, 266, 275, 284
NciI	CCSGG	2 cut(s)	88, 236
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	6 cut(s)	3, 90, 170, 425, 669, 680
NlaIII	CATG	4 cut(s)	16, 592, 626, 825
NlaIV	GGNNCC	2 cut(s)	387, 552
PagI	TCATGA	1 cut(s)	622
PciSI	GCTCTTC	1 cut(s)	783
PdmI	GAANNNNTTC	1 cut(s)	121
PfeI	GAWTC	4 cut(s)	445, 450, 707, 892
Pfl23II	CGTACG	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	98
Ple19I	CGATCG	1 cut(s)	672
PleI	GAGTC	2 cut(s)	14, 601
PpsI	GAGTC	2 cut(s)	14, 601
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspLI	CGTACG	1 cut(s)	27
PspN4I	GGNNCC	2 cut(s)	387, 552
PspPI	GGNCC	1 cut(s)	85
PvuI	CGATCG	1 cut(s)	672
RsaI	GTAC	2 cut(s)	29, 245
RsaNI	GTAC	2 cut(s)	28, 244
SapI	GCTCTTC	1 cut(s)	783
SaqAI	TTAA	3 cut(s)	528, 686, 731
SatI	GCNGC	1 cut(s)	97
Sau3AI	GATC	6 cut(s)	3, 90, 170, 425, 669, 680
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	2 cut(s)	14, 601
ScrFI	CCNGG	3 cut(s)	88, 207, 236
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	4 cut(s)	109, 331, 557, 728
SsiI	CCGC	2 cut(s)	97, 420
SspMI	CTAG	3 cut(s)	594, 648, 714
StyD4I	CCNGG	3 cut(s)	86, 205, 234
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	27, 32
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	5 cut(s)	35, 231, 448, 691, 697
TasI	AATT	4 cut(s)	109, 331, 557, 728
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	4 cut(s)	445, 450, 707, 892
Tru1I	TTAA	3 cut(s)	528, 686, 731
Tru9I	TTAA	3 cut(s)	528, 686, 731
TscAI	CASTG	2 cut(s)	84, 199
TspDTI	ATGAA	2 cut(s)	240, 360
TspRI	CASTG	2 cut(s)	84, 199
XagI	CCTNNNNNAGG	1 cut(s)	375
XapI	RAATTY	2 cut(s)	109, 331
XbaI	TCTAGA	1 cut(s)	713
XmnI	GAANNNNTTC	1 cut(s)	121
XspI	CTAG	3 cut(s)	594, 648, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.