Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002045.1

Orthogroup ID

OG0006085

Physical Location & Seq

Genomic Coordinates Forward (+)

218478 .. 219902

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002045.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgaccagagatgttggaactcaaagcactcctcctgatatcagttctagcagtcttagctctgcttcaactcctcccattgtagaaagatcattaaatcgatttcgtggcggagattcaccaaattcaaattcaaattcaaattcaaaaccaaaatctgaagaagaggttgaagaagaagagatggaagtgaaagatacagaagaggaagaagaaacaaaaagggaaaaggaagagagaaagaaaaaagaagagcaaaagtggaggcaaggtgggtgcttgtcatggatgagaaaaaggtacagagagaaacacaaaccaagaaagaagaatatgtttctttctcatctcaaagcgtgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.99

Weight (kDa)

8.53

Isoelectric Point (pI)

74.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02500 AT3G02500 AT3G02500 AT5G16030 AT5G16030 AT5G16030 AT5G16030 AT5G16030
fragaria_vesca	FvH4_6g45350 FvH4_6g45350
malus_domestica	MD09G1084800.v1.1 MD17G1074300.v1.1
prunus_persica	Prupe.3G239700_v2.0.a1
pyrus_communis	pycom17g07490
rosa_chinensis	RchiOBHm_Chr2g0163131 RchiOBHm_Chr4g0404491
rosa_laevigata	RLG00000021376
rosa_multiflora	Rmu_sc0002045.1_g000042
rosa_roxburghii	Rroxscaffold_2G00087520
rosa_rugosa	Rorug02G0500800
rosa_samantha	Rh2AG567100 Rh2BG579400 Rh2CG549300 Rh2DG589700 Rh5BG309300 Rh5DG319800
rosa_wichuraiana	Rw2G046960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	111
AcsI	RAATTY	4 cut(s)	124, 130, 136, 142
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	1 cut(s)	302
AgsI	TTSAA	6 cut(s)	69, 129, 135, 141, 147, 173
AjuI	GAANNNNNNNTTGG	2 cut(s)	115, 147
AluBI	AGCT	1 cut(s)	60
AluI	AGCT	1 cut(s)	60
ApoI	RAATTY	4 cut(s)	124, 130, 136, 142
AsuHPI	GGTGA	1 cut(s)	111
BccI	CCATC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	48
Bsa29I	ATCGAT	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
BseCI	ATCGAT	1 cut(s)	100
BseGI	GGATG	1 cut(s)	294
BseRI	GAGGAG	2 cut(s)	21, 63
BshVI	ATCGAT	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	1 cut(s)	111
BspDI	ATCGAT	1 cut(s)	100
BspQI	GCTCTTC	1 cut(s)	246
BssMI	GATC	1 cut(s)	89
Bst6I	CTCTTC	5 cut(s)	159, 174, 198, 228, 246
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	1 cut(s)	294
BstKTI	GATC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	89
BstMWI	GCNNNNNNNGC	1 cut(s)	57
Bsu15I	ATCGAT	1 cut(s)	100
BsuTUI	ATCGAT	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	358
ClaI	ATCGAT	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	1 cut(s)	285
CviJI	RGCY	1 cut(s)	60
CviKI_1	RGCY	1 cut(s)	60
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
Eam1104I	CTCTTC	5 cut(s)	159, 174, 198, 228, 246
EarI	CTCTTC	5 cut(s)	159, 174, 198, 228, 246
EciI	GGCGGA	1 cut(s)	126
Eco32I	GATATC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	180
EcoRV	GATATC	1 cut(s)	40
FaeI	CATG	1 cut(s)	288
FaiI	YATR	2 cut(s)	286, 335
FatI	CATG	1 cut(s)	284
FokI	GGATG	1 cut(s)	301
FspBI	CTAG	1 cut(s)	48
Hin1II	CATG	1 cut(s)	288
HinfI	GANTC	1 cut(s)	116
HphI	GGTGA	1 cut(s)	111
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpyF3I	CTNAG	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	288
Kzo9I	GATC	1 cut(s)	89
LguI	GCTCTTC	1 cut(s)	246
LpnPI	CCDG	2 cut(s)	19, 48
MaeI	CTAG	1 cut(s)	48
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MluCI	AATT	4 cut(s)	124, 130, 136, 142
MnlI	CCTC	5 cut(s)	42, 84, 160, 199, 258
MseI	TTAA	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	57
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	1 cut(s)	288
PciSI	GCTCTTC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	116
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	95
Sau3AI	GATC	1 cut(s)	89
SetI	ASST	4 cut(s)	62, 171, 274, 302
SgeI	CNNG	8 cut(s)	18, 47, 60, 119, 281, 292, 297, 333
Sse9I	AATT	4 cut(s)	124, 130, 136, 142
SsiI	CCGC	1 cut(s)	111
SspMI	CTAG	1 cut(s)	48
TaqI	TCGA	1 cut(s)	100
TasI	AATT	4 cut(s)	124, 130, 136, 142
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
XapI	RAATTY	4 cut(s)	124, 130, 136, 142
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.