Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006085

Physical Location & Seq

Genomic Coordinates Reverse (-)

74680432 .. 74682989

Gene Structure 2558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021376

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAAGAATCCCCATATAGTTCTAGGGGACATGACGAACCCGAGTTCAGCTTGAGAGATTGGGCTGTCAAGGCTAGAGGAATCAGCCGCGAAAACACGAATTCCAGAAGGTTCTCAGCATCCTACATTCGAAGCTTTAGAGAAGACACAAGGTCTTTCAGATCAAACATTACCATCTCCAGCACTGCTTCTTCTCCTGGCTATGCCTTAAGAGATGAAATTGACCCTGCAACTTACTCATTCACCACTGCCCTCAAAGCATTGCAAGCAAGGTCTGCCTACAATAGTTGGGAGGCTTTATCCCCAGATGGGTTTGCTTTACATTCAAAGTGGAATGAAGCAGAGAAATACATATGCAACCCTCTTTCAGGACAAGTCCCAATGGAGTGTTTATCTGCAAAAACACTTAGTGGAAGATCGTTTCGAAACATAACAAATCGAATCACAATGTCTGCACCTCTTGTTTACTCTTCTCACACCAGGCCAATCCATACCACCAAGCCTTCTTATTCCACCAAAGAAGACTTGGCTCCTCATTTCCCAATTCCAGCAAAGAAAAATGAGGGTATGACCAGAGATGTTGGAACTCAAAGCACTCCTCCTGATATTAGTTCTAGCAGTCTTAGCTCTGCTTCAACTCCTCCCATTGTAGAAAGATCATTAAATCGATTTCGTGGCGGAGATTCACCAAATTCAAATTCAAATTCAAAACCAAAATCTGAAGAAGAGGTGCAGATGGAGGTGAAAGATACAGAAGAGCAAGAAGAAACAAAAAGAGAAGAGGAGGCGAGAGAGAAAAAAGAAGAGCAAAAGTGGAGGCAAGGTGGGTGCTTGTCATGGATGAGAAAAAGAATAGATCAGTCATCTTTATGCTTTGTTCTTGTTTATGGTCCAAATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

301

Amino Acids

33.77

Weight (kDa)

8.26

Isoelectric Point (pI)

65.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006085)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02500 AT3G02500 AT3G02500 AT5G16030 AT5G16030 AT5G16030 AT5G16030 AT5G16030
fragaria_vesca	FvH4_6g45350 FvH4_6g45350
malus_domestica	MD09G1084800.v1.1 MD17G1074300.v1.1
prunus_persica	Prupe.3G239700_v2.0.a1
pyrus_communis	pycom17g07490
rosa_chinensis	RchiOBHm_Chr2g0163131 RchiOBHm_Chr4g0404491
rosa_laevigata	RLG00000021376
rosa_multiflora	Rmu_sc0002045.1_g000042
rosa_roxburghii	Rroxscaffold_2G00087520
rosa_rugosa	Rorug02G0500800
rosa_samantha	Rh2AG567100 Rh2BG579400 Rh2CG549300 Rh2DG589700 Rh5BG309300 Rh5DG319800
rosa_wichuraiana	Rw2G046960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	90
AciI	CCGC	2 cut(s)	88, 678
AcsI	RAATTY	4 cut(s)	100, 691, 697, 703
AcuI	CTGAAG	1 cut(s)	741
AdeI	CACNNNGTG	1 cut(s)	410
AfiI	CCNNNNNNNGG	2 cut(s)	309, 368
AflII	CTTAAG	1 cut(s)	208
AgsI	TTSAA	5 cut(s)	327, 636, 696, 702, 708
AhdI	GACNNNNNGTC	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	196, 479
AjuI	GAANNNNNNNTTGG	2 cut(s)	682, 714
AluBI	AGCT	3 cut(s)	51, 135, 627
AluI	AGCT	3 cut(s)	51, 135, 627
Ama87I	CYCGRG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	482
ApoI	RAATTY	4 cut(s)	100, 691, 697, 703
AspS9I	GGNCC	1 cut(s)	890
AsuHPI	GGTGA	3 cut(s)	235, 678, 754
AsuII	TTCGAA	2 cut(s)	130, 424
AvaI	CYCGRG	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	890
BbsI	GAAGAC	2 cut(s)	150, 528
BccI	CCATC	3 cut(s)	182, 302, 730
BciT130I	CCWGG	2 cut(s)	198, 481
BfaI	CTAG	3 cut(s)	24, 75, 615
BfrI	CTTAAG	1 cut(s)	208
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	2 cut(s)	198, 481
Bme18I	GGWCC	1 cut(s)	890
BmeRI	GACNNNNNGTC	1 cut(s)	151
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	1 cut(s)	890
BmiI	GGNNCC	1 cut(s)	531
BmrFI	CCNGG	2 cut(s)	198, 481
BmsI	GCATC	1 cut(s)	128
BpiI	GAAGAC	2 cut(s)	150, 528
BpmI	CTGGAG	1 cut(s)	163
Bpu14I	TTCGAA	2 cut(s)	130, 424
BpuEI	CTTGAG	1 cut(s)	73
Bsa29I	ATCGAT	1 cut(s)	667
BsaXI	ACNNNNNCTCC	2 cut(s)	808, 838
Bsc4I	CCNNNNNNNGG	2 cut(s)	309, 368
Bse3DI	GCAATG	1 cut(s)	260
BseBI	CCWGG	2 cut(s)	198, 481
BseCI	ATCGAT	1 cut(s)	667
BseGI	GGATG	2 cut(s)	119, 846
BseLI	CCNNNNNNNGG	2 cut(s)	309, 368
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	129
BseRI	GAGGAG	4 cut(s)	522, 588, 630, 797
BsgI	GTGCAG	2 cut(s)	438, 752
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	484
BshVI	ATCGAT	1 cut(s)	667
BsiHKCI	CYCGRG	1 cut(s)	41
BslFI	GGGAC	2 cut(s)	42, 362
BslI	CCNNNNNNNGG	2 cut(s)	309, 368
BsmFI	GGGAC	2 cut(s)	42, 362
BsnI	GGCC	1 cut(s)	484
BsoBI	CYCGRG	1 cut(s)	41
Bsp119I	TTCGAA	2 cut(s)	130, 424
Bsp143I	GATC	4 cut(s)	161, 416, 656, 856
BspACI	CCGC	2 cut(s)	88, 678
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	1 cut(s)	128
BspDI	ATCGAT	1 cut(s)	667
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	531
BspQI	GCTCTTC	2 cut(s)	750, 798
BspT104I	TTCGAA	2 cut(s)	130, 424
BspTI	CTTAAG	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	260
BssMI	GATC	4 cut(s)	161, 416, 656, 856
Bst2UI	CCWGG	2 cut(s)	198, 481
Bst6I	CTCTTC	5 cut(s)	475, 720, 750, 774, 798
BstAFI	CTTAAG	1 cut(s)	208
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstBI	TTCGAA	2 cut(s)	130, 424
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	3 cut(s)	115, 407, 623
BstENI	CCTNNNNNAGG	1 cut(s)	366
BstF5I	GGATG	2 cut(s)	119, 846
BstFNI	CGCG	1 cut(s)	90
BstKTI	GATC	4 cut(s)	164, 419, 659, 859
BstMBI	GATC	4 cut(s)	161, 416, 656, 856
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 257, 266, 275, 624
BstNI	CCWGG	2 cut(s)	198, 481
BstSCI	CCNGG	2 cut(s)	196, 479
BstUI	CGCG	1 cut(s)	90
BstV2I	GAAGAC	2 cut(s)	150, 528
Bsu15I	ATCGAT	1 cut(s)	667
BsuRI	GGCC	1 cut(s)	484
BsuTUI	ATCGAT	1 cut(s)	667
BtsCI	GGATG	2 cut(s)	119, 846
BtsI	GCAGTG	2 cut(s)	183, 246
BtsIMutI	CAGTG	2 cut(s)	183, 246
Cac8I	GCNNGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	890
ClaI	ATCGAT	1 cut(s)	667
CviAII	CATG	2 cut(s)	32, 837
DdeI	CTNAG	3 cut(s)	115, 407, 623
DpnI	GATC	4 cut(s)	163, 418, 658, 858
DpnII	GATC	4 cut(s)	161, 416, 656, 856
DraIII	CACNNNGTG	1 cut(s)	410
DriI	GACNNNNNGTC	1 cut(s)	151
Eam1104I	CTCTTC	5 cut(s)	475, 720, 750, 774, 798
Eam1105I	GACNNNNNGTC	1 cut(s)	151
EarI	CTCTTC	5 cut(s)	475, 720, 750, 774, 798
EciI	GGCGGA	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	890
Eco57I	CTGAAG	1 cut(s)	741
Eco88I	CYCGRG	1 cut(s)	41
EcoNI	CCTNNNNNAGG	1 cut(s)	366
EcoRI	GAATTC	1 cut(s)	100
EcoRII	CCWGG	2 cut(s)	196, 479
FaeI	CATG	2 cut(s)	35, 840
FaqI	GGGAC	2 cut(s)	42, 362
FatI	CATG	2 cut(s)	31, 836
FauNDI	CATATG	1 cut(s)	353
Fnu4HI	GCNGC	1 cut(s)	88
FokI	GGATG	2 cut(s)	106, 853
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	3 cut(s)	24, 75, 615
GluI	GCNGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	163
HaeIII	GGCC	1 cut(s)	484
Hin1II	CATG	2 cut(s)	35, 840
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	4 cut(s)	8, 81, 441, 683
HphI	GGTGA	3 cut(s)	235, 678, 754
Hpy166II	GTNNAC	1 cut(s)	466
Hpy188I	TCNGA	2 cut(s)	161, 721
Hpy188III	TCNNGA	3 cut(s)	105, 369, 602
Hpy8I	GTNNAC	1 cut(s)	466
HpyAV	CCTTC	2 cut(s)	102, 513
HpyCH4V	TGCA	6 cut(s)	230, 265, 357, 398, 455, 733
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 257, 266, 275, 624
HpyF3I	CTNAG	3 cut(s)	115, 407, 623
Hsp92II	CATG	2 cut(s)	35, 840
Kzo9I	GATC	4 cut(s)	161, 416, 656, 856
LguI	GCTCTTC	2 cut(s)	750, 798
LmnI	GCTCC	1 cut(s)	535
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	3 cut(s)	24, 75, 615
MalI	GATC	4 cut(s)	163, 418, 658, 858
MboI	GATC	4 cut(s)	161, 416, 656, 856
MluCI	AATT	6 cut(s)	100, 219, 543, 691, 697, 703
MmeI	TCCRAC	1 cut(s)	562
MseI	TTAA	2 cut(s)	209, 662
MslI	CAYNNNNRTG	1 cut(s)	868
MspCI	CTTAAG	1 cut(s)	208
MspR9I	CCNGG	2 cut(s)	198, 481
MvaI	CCWGG	2 cut(s)	198, 481
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	5 cut(s)	71, 257, 266, 275, 624
NdeI	CATATG	1 cut(s)	353
NdeII	GATC	4 cut(s)	161, 416, 656, 856
NlaIII	CATG	2 cut(s)	35, 840
NlaIV	GGNNCC	1 cut(s)	531
NspV	TTCGAA	2 cut(s)	130, 424
PciSI	GCTCTTC	2 cut(s)	750, 798
PfeI	GAWTC	4 cut(s)	8, 81, 441, 683
PkrI	GCNGC	1 cut(s)	89
Psp6I	CCWGG	2 cut(s)	196, 479
PspGI	CCWGG	2 cut(s)	196, 479
PspN4I	GGNNCC	1 cut(s)	531
PspPI	GGNCC	1 cut(s)	890
RseI	CAYNNNNRTG	1 cut(s)	868
SapI	GCTCTTC	2 cut(s)	750, 798
SaqAI	TTAA	2 cut(s)	209, 662
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	4 cut(s)	161, 416, 656, 856
Sau96I	GGNCC	1 cut(s)	890
ScrFI	CCNGG	2 cut(s)	198, 481
SfaNI	GCATC	1 cut(s)	128
SfuI	TTCGAA	2 cut(s)	130, 424
SinI	GGWCC	1 cut(s)	890
SmiMI	CAYNNNNRTG	1 cut(s)	868
SmlI	CTYRAG	2 cut(s)	52, 208
SmoI	CTYRAG	2 cut(s)	52, 208
Sse9I	AATT	6 cut(s)	100, 219, 543, 691, 697, 703
SsiI	CCGC	2 cut(s)	88, 678
SspMI	CTAG	3 cut(s)	24, 75, 615
StyD4I	CCNGG	2 cut(s)	196, 479
TaqI	TCGA	4 cut(s)	130, 424, 439, 667
TasI	AATT	6 cut(s)	100, 219, 543, 691, 697, 703
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	4 cut(s)	8, 81, 441, 683
Tru1I	TTAA	2 cut(s)	209, 662
Tru9I	TTAA	2 cut(s)	209, 662
TscAI	CASTG	2 cut(s)	190, 253
TspDTI	ATGAA	2 cut(s)	231, 351
TspRI	CASTG	2 cut(s)	190, 253
Vha464I	CTTAAG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	890
XagI	CCTNNNNNAGG	1 cut(s)	366
XapI	RAATTY	4 cut(s)	100, 691, 697, 703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	523
XspI	CTAG	3 cut(s)	24, 75, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.