Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010451

Physical Location & Seq

Genomic Coordinates Reverse (-)

742354 .. 744315

Gene Structure 1962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G03220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCAACGGTTTCTTCTACCTTTACTCTTCCTTGCACTATCGCCGCCGGCGATTTGTCATTACTCTTCCTCAACCTCTTCACCTTCTTCGTCCTCCGTTTCTTCCGACGCCTCAGAATGGCGTCCAGCTCGAGCCACCTACTACGCCGCTACGAATCCTCGAGACGCGGTGGGCGGTGCGTGTGGATACGGAGATCTCGTCAAATCTGGGTACGGTATGGCTACTGTTGGTCTAAGCGAGACTCTGTTTGAGCGTGGTCAGATCTGTGGTGCTTGTTTCGAGCTCAGATGTGTTGATGATCTCCGTTGGTGTATCCCTGGAACTTCAATTATACTCACCGCTACGAATTTCTGTGCTCCTAATTACGGATTTGATCCCGACGGTGGTGGTCATTGTAATCCACCTAACAAACATTTCGTGCTTCCGATCGAAGCGTTTGAGAAGATCGCTATTTGGAAAGCTGGGAACATGCCGGTGCAGTATCGAAGGATCAACTGTAGAAAGGAAGGGAGCATGCGGTTTACAGTCGATGGTGGAGGCATTTTCATTTCGGTTTTGATCACCAATGTTGCAGGGTCCGGTGATATAGCTGCTGTGAAGATCAAAGGGTCGAGAACCGGGTGGTTACCTATGGGTCGTAATTGGGGACAAAATTGGCATATTAATGCTGATCTCAGGAACCAAGCTCTCTCATTTGAAGTAACTTCTAGTGACAGGTCAACCGTGACATCTTACAATGTCTCCCCGAAAAACTGGAATTATGGACAGACCTTCGAAGGGAAACAATTCGAGACTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

266

Amino Acids

28.98

Weight (kDa)

8.35

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	76 - 161	5.7e-17	Lytic transglycolase
Expansin_C	PF01357	172 - 249	4.6e-27	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03220
fragaria_vesca	FvH4_1g27660 FvH4_1g27740 FvH4_3g13760
malus_domestica	MD09G1279500.v1.1 MD17G1271500.v1.1
prunus_persica	Prupe.3G014800_v2.0.a1 Prupe.3G014800_v2.0.a1
pyrus_communis	pycom09g18760 pycom17g26980
rosa_chinensis	RchiOBHm_Chr3g0488771
rosa_laevigata	RLG00000022922
rosa_multiflora	Rmu_sc0001208.1_g000048 Rmu_sc0006246.1_g000010
rosa_roxburghii	Rroxscaffold_6G00393860
rosa_rugosa	Rorug03G0241600
rosa_samantha	Rh3AG289700 Rh3BG326800 Rh3CG324200 Rh3DG322700
rosa_wichuraiana	Rw3G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	167
AciI	CCGC	6 cut(s)	44, 147, 167, 174, 339, 517
AclWI	GGATC	2 cut(s)	368, 497
AcsI	RAATTY	1 cut(s)	346
AcyI	GRCGYC	2 cut(s)	108, 121
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	4 cut(s)	117, 365, 383, 777
AgsI	TTSAA	2 cut(s)	327, 698
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	5 cut(s)	128, 283, 461, 590, 686
AluI	AGCT	5 cut(s)	128, 283, 461, 590, 686
Alw21I	GWGCWC	2 cut(s)	285, 358
Alw26I	GTCTC	4 cut(s)	156, 233, 745, 785
AlwI	GGATC	2 cut(s)	368, 497
Ama87I	CYCGRG	2 cut(s)	129, 159
ApeKI	GCWGC	1 cut(s)	590
ApoI	RAATTY	1 cut(s)	346
AseI	ATTAAT	1 cut(s)	663
Asp700I	GAANNNNTTC	1 cut(s)	785
AspS9I	GGNCC	1 cut(s)	576
AsuC2I	CCSGG	1 cut(s)	619
AsuHPI	GGTGA	4 cut(s)	72, 328, 553, 593
AsuII	TTCGAA	1 cut(s)	774
AvaI	CYCGRG	2 cut(s)	129, 159
AvaII	GGWCC	1 cut(s)	576
BanII	GRGCYC	1 cut(s)	285
Bbv12I	GWGCWC	2 cut(s)	285, 358
BbvI	GCAGC	1 cut(s)	577
BccI	CCATC	1 cut(s)	524
BciT130I	CCWGG	1 cut(s)	318
BciVI	GTATCC	2 cut(s)	179, 323
BclI	TGATCA	1 cut(s)	558
BcnI	CCSGG	1 cut(s)	619
BcoDI	GTCTC	4 cut(s)	156, 233, 745, 785
BfaI	CTAG	1 cut(s)	708
BfmI	CTRYAG	1 cut(s)	496
BfuI	GTATCC	2 cut(s)	179, 323
BglII	AGATCT	2 cut(s)	193, 261
BisI	GCNGC	3 cut(s)	44, 147, 591
BlsI	GCNGC	3 cut(s)	45, 148, 592
Bme1390I	CCNGG	2 cut(s)	318, 619
Bme18I	GGWCC	1 cut(s)	576
BmeT110I	CYCGRG	2 cut(s)	129, 159
BmgT120I	GGNCC	1 cut(s)	576
BmiI	GGNNCC	2 cut(s)	577, 680
BmrFI	CCNGG	2 cut(s)	318, 619
Bpu14I	TTCGAA	1 cut(s)	774
BpuMI	CCSGG	1 cut(s)	619
BsaHI	GRCGYC	2 cut(s)	108, 121
BsaJI	CCNNGG	1 cut(s)	316
BsaWI	WCCGGW	1 cut(s)	578
BsaXI	ACNNNNNCTCC	4 cut(s)	183, 213, 725, 755
Bsc4I	CCNNNNNNNGG	4 cut(s)	117, 365, 383, 777
Bse118I	RCCGGY	2 cut(s)	46, 472
Bse1I	ACTGG	1 cut(s)	758
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	316
BseLI	CCNNNNNNNGG	4 cut(s)	117, 365, 383, 777
BseMII	CTCAG	3 cut(s)	126, 298, 688
BseNI	ACTGG	1 cut(s)	758
BseXI	GCAGC	1 cut(s)	577
BseYI	CCCAGC	1 cut(s)	461
BsgI	GTGCAG	1 cut(s)	497
Bsh1236I	CGCG	1 cut(s)	167
Bsh1285I	CGRYCG	1 cut(s)	429
BsiEI	CGRYCG	1 cut(s)	429
BsiHKAI	GWGCWC	2 cut(s)	285, 358
BsiHKCI	CYCGRG	2 cut(s)	129, 159
BsiSI	CCGG	4 cut(s)	47, 473, 579, 618
BslFI	GGGAC	1 cut(s)	660
BslI	CCNNNNNNNGG	4 cut(s)	117, 365, 383, 777
BsmAI	GTCTC	4 cut(s)	156, 233, 745, 785
BsmBI	CGTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	660
BsoBI	CYCGRG	2 cut(s)	129, 159
Bsp119I	TTCGAA	1 cut(s)	774
Bsp1286I	GDGCHC	2 cut(s)	285, 358
BspACI	CCGC	6 cut(s)	44, 147, 167, 174, 339, 517
BspCNI	CTCAG	3 cut(s)	125, 297, 687
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	2 cut(s)	577, 680
BspPI	GGATC	2 cut(s)	368, 497
BspT104I	TTCGAA	1 cut(s)	774
BsrFI	RCCGGY	2 cut(s)	46, 472
BsrI	ACTGG	1 cut(s)	758
BssAI	RCCGGY	2 cut(s)	46, 472
BssECI	CCNNGG	1 cut(s)	316
BssNI	GRCGYC	2 cut(s)	108, 121
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	7 cut(s)	9, 215, 226, 383, 497, 526, 724
Bst6I	CTCTTC	3 cut(s)	32, 70, 82
BstACI	GRCGYC	2 cut(s)	108, 121
BstBI	TTCGAA	1 cut(s)	774
BstC8I	GCNNGC	2 cut(s)	48, 515
BstDEI	CTNAG	4 cut(s)	112, 233, 284, 674
BstEII	GGTNACC	1 cut(s)	624
BstFNI	CGCG	1 cut(s)	167
BstMAI	GTCTC	4 cut(s)	156, 233, 745, 785
BstMCI	CGRYCG	1 cut(s)	429
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	2 cut(s)	472, 517
BstPI	GGTNACC	1 cut(s)	624
BstSCI	CCNGG	2 cut(s)	316, 617
BstSFI	CTRYAG	1 cut(s)	496
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	577
BstX2I	RGATCY	2 cut(s)	193, 261
BstYI	RGATCY	2 cut(s)	193, 261
BsuI	GTATCC	2 cut(s)	179, 323
Cac8I	GCNNGC	2 cut(s)	48, 515
Cfr10I	RCCGGY	2 cut(s)	46, 472
Cfr13I	GGNCC	1 cut(s)	576
CseI	GACGC	3 cut(s)	110, 116, 173
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	2 cut(s)	469, 514
CviJI	RGCY	7 cut(s)	128, 134, 221, 283, 461, 590, 686
CviKI_1	RGCY	7 cut(s)	128, 134, 221, 283, 461, 590, 686
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	4 cut(s)	112, 233, 284, 674
Eam1104I	CTCTTC	3 cut(s)	32, 70, 82
EarI	CTCTTC	3 cut(s)	32, 70, 82
Ecl136II	GAGCTC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	576
Eco53kI	GAGCTC	1 cut(s)	283
Eco88I	CYCGRG	2 cut(s)	129, 159
Eco91I	GGTNACC	1 cut(s)	624
EcoICRI	GAGCTC	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	624
EcoRII	CCWGG	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	156
FaeI	CATG	2 cut(s)	472, 517
FaiI	YATR	8 cut(s)	218, 332, 470, 515, 587, 632, 660, 762
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	2 cut(s)	468, 513
FbaI	TGATCA	1 cut(s)	558
Fnu4HI	GCNGC	3 cut(s)	44, 147, 591
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	3 cut(s)	44, 147, 591
FspBI	CTAG	1 cut(s)	708
GluI	GCNGC	3 cut(s)	44, 147, 591
GsaI	CCCAGC	1 cut(s)	465
HapII	CCGG	4 cut(s)	47, 473, 579, 618
HgaI	GACGC	3 cut(s)	110, 116, 173
Hin1I	GRCGYC	2 cut(s)	108, 121
Hin1II	CATG	2 cut(s)	472, 517
HincII	GTYRAC	1 cut(s)	720
HindII	GTYRAC	1 cut(s)	720
HinfI	GANTC	3 cut(s)	154, 241, 793
HpaII	CCGG	4 cut(s)	47, 473, 579, 618
HphI	GGTGA	4 cut(s)	72, 328, 553, 593
Hpy166II	GTNNAC	2 cut(s)	522, 720
Hpy188I	TCNGA	5 cut(s)	106, 115, 261, 287, 426
Hpy188III	TCNNGA	5 cut(s)	161, 377, 612, 676, 790
Hpy8I	GTNNAC	2 cut(s)	522, 720
Hpy99I	CGWCG	2 cut(s)	110, 383
HpyAV	CCTTC	5 cut(s)	93, 480, 500, 770, 781
HpyCH4III	ACNGT	7 cut(s)	9, 215, 226, 383, 497, 526, 724
HpyCH4V	TGCA	4 cut(s)	4, 35, 478, 572
HpyF3I	CTNAG	4 cut(s)	112, 233, 284, 674
Hsp92I	GRCGYC	2 cut(s)	108, 121
Hsp92II	CATG	2 cut(s)	472, 517
KroI	GCCGGC	1 cut(s)	46
KroNI	GCCGGC	1 cut(s)	48
Ksp22I	TGATCA	1 cut(s)	558
LmnI	GCTCC	2 cut(s)	361, 510
Lsp1109I	GCAGC	1 cut(s)	577
MaeI	CTAG	1 cut(s)	708
MaeIII	GTNAC	4 cut(s)	624, 700, 710, 724
MboII	GAAGA	8 cut(s)	5, 19, 57, 69, 78, 93, 454, 610
MflI	RGATCY	2 cut(s)	193, 261
MhlI	GDGCHC	2 cut(s)	285, 358
MluCI	AATT	7 cut(s)	327, 346, 361, 640, 652, 757, 785
MlyI	GAGTC	2 cut(s)	235, 787
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	6 cut(s)	79, 85, 103, 121, 168, 530
MreI	CGCCGGCG	1 cut(s)	46
MroNI	GCCGGC	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	785
MseI	TTAA	1 cut(s)	663
MslI	CAYNNNNRTG	2 cut(s)	473, 663
MspI	CCGG	4 cut(s)	47, 473, 579, 618
MspR9I	CCNGG	2 cut(s)	318, 619
MvaI	CCWGG	1 cut(s)	318
MvnI	CGCG	1 cut(s)	167
NaeI	GCCGGC	1 cut(s)	48
NciI	CCSGG	1 cut(s)	619
NgoMIV	GCCGGC	1 cut(s)	46
NlaIII	CATG	2 cut(s)	472, 517
NlaIV	GGNNCC	2 cut(s)	577, 680
NmuCI	GTSAC	2 cut(s)	710, 724
NspI	RCATGY	2 cut(s)	472, 517
NspV	TTCGAA	1 cut(s)	774
PaeI	GCATGC	1 cut(s)	517
PaeR7I	CTCGAG	2 cut(s)	129, 159
PcsI	WCGNNNNNNNCGW	2 cut(s)	47, 195
PdiI	GCCGGC	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	785
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	3 cut(s)	45, 148, 592
Ple19I	CGATCG	1 cut(s)	429
PleI	GAGTC	2 cut(s)	235, 787
PpsI	GAGTC	2 cut(s)	235, 787
PshBI	ATTAAT	1 cut(s)	663
Psp124BI	GAGCTC	1 cut(s)	285
Psp6I	CCWGG	1 cut(s)	316
PspEI	GGTNACC	1 cut(s)	624
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	577, 680
PspPI	GGNCC	1 cut(s)	576
PspXI	VCTCGAGB	1 cut(s)	129
PsuI	RGATCY	2 cut(s)	193, 261
PvuI	CGATCG	1 cut(s)	429
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	2 cut(s)	473, 663
SacI	GAGCTC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	663
SatI	GCNGC	3 cut(s)	44, 147, 591
Sau96I	GGNCC	1 cut(s)	576
SchI	GAGTC	2 cut(s)	235, 787
ScrFI	CCNGG	2 cut(s)	318, 619
SduI	GDGCHC	2 cut(s)	285, 358
SfcI	CTRYAG	1 cut(s)	496
Sfr274I	CTCGAG	2 cut(s)	129, 159
SfuI	TTCGAA	1 cut(s)	774
SgrAI	CRCCGGYG	1 cut(s)	46
SinI	GGWCC	1 cut(s)	576
SlaI	CTCGAG	2 cut(s)	129, 159
SmiMI	CAYNNNNRTG	2 cut(s)	473, 663
SmlI	CTYRAG	2 cut(s)	129, 159
SmoI	CTYRAG	2 cut(s)	129, 159
SphI	GCATGC	1 cut(s)	517
Sse9I	AATT	7 cut(s)	327, 346, 361, 640, 652, 757, 785
SsiI	CCGC	6 cut(s)	44, 147, 167, 174, 339, 517
SspMI	CTAG	1 cut(s)	708
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	316, 617
TaaI	ACNGT	7 cut(s)	9, 215, 226, 383, 497, 526, 724
TaqI	TCGA	9 cut(s)	130, 160, 279, 429, 484, 528, 611, 774, 789
TasI	AATT	7 cut(s)	327, 346, 361, 640, 652, 757, 785
TauI	GCSGC	2 cut(s)	46, 149
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TseFI	GTSAC	2 cut(s)	710, 724
TseI	GCWGC	1 cut(s)	590
Tsp45I	GTSAC	2 cut(s)	710, 724
TspDTI	ATGAA	1 cut(s)	535
TspGWI	ACGGA	5 cut(s)	85, 204, 293, 381, 786
VpaK11BI	GGWCC	1 cut(s)	576
VspI	ATTAAT	1 cut(s)	663
XapI	RAATTY	1 cut(s)	346
XceI	RCATGY	2 cut(s)	472, 517
XhoI	CTCGAG	2 cut(s)	129, 159
XmnI	GAANNNNTTC	1 cut(s)	785
XspI	CTAG	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.