Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010451

Physical Location & Seq

Genomic Coordinates Reverse (-)

1053857 .. 1056980

Gene Structure 3124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G014800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTCACCAACTCTGCAGCTGCTGCTGCCGCTCCTCCTCCTCACATTTCTAGCCTCCACAGCCCTCTCCCACTTGCCTTCATCCTCCGTCACTACCACCACCTCACTCTCCATCTACGACTGGCAGTCCGCACGCGCCACCTACTACGCCGCTTCGGACCCCCGCGACGCCGTCGGCGGCGCCTGCGGCTACGGAGATTTGGTGAAGGCCGGCTACGGCATGGCAACGGTGGGGCTGAGCGAGCCTCTGTTCGAGCGCGGCCAGATCTGCGGCGCGTGCTTCGTGCTCCGCTGCGTCGATGACATGCGCTGGTGCATTCCGGGCACCTCCATCATCGTCACCGCCACCAACTTCTGCGCCCCTAACTACGGCTTCACCGCCGACGGTGGGGGCCACTGCAACCCTCCCAACAAGCACCTGGTGCTCCCCATCGAGGCCTTCGAGAAGATCGCCATTTGGAAAGCTGGCAATATGCCCGTCCAGTATCGCAGGATCAAGTGTAGAAAGGAAGGAGGAATTCGTTTCACCATAGATGGTTCTAATATCTTTATCTCAGTGCTGATCACCAATGTCGCTGGTGTCGGAGACATAGTTTCTGTGAAGATCAAAGGTTCAAGAACCGGTTGGCTTCCAATGGGACGAAATTGGGGCCAAAACTGGCATGTCAGTGCTGATCTAAAAAACCAACCTCTTTCTTTCGAGGTCACTAGCAGCGATGGGCTCACAGTTACATCTTACAACGTAGCTCCCAAGGCTTGGAACTTTGGACAGACATTTGAAGGGAAGCAGTTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

266

Amino Acids

28.67

Weight (kDa)

8.6

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03220
fragaria_vesca	FvH4_1g27660 FvH4_1g27740 FvH4_3g13760
malus_domestica	MD09G1279500.v1.1 MD17G1271500.v1.1
prunus_persica	Prupe.3G014800_v2.0.a1 Prupe.3G014800_v2.0.a1
pyrus_communis	pycom09g18760 pycom17g26980
rosa_chinensis	RchiOBHm_Chr3g0488771
rosa_laevigata	RLG00000022922
rosa_multiflora	Rmu_sc0001208.1_g000048 Rmu_sc0006246.1_g000010
rosa_roxburghii	Rroxscaffold_6G00393860
rosa_rugosa	Rorug03G0241600
rosa_samantha	Rh3AG289700 Rh3BG326800 Rh3CG324200 Rh3DG322700
rosa_wichuraiana	Rw3G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	179, 323
AccB7I	CCANNNNNTGG	1 cut(s)	756
AccBSI	CCGCTC	1 cut(s)	31
AccII	CGCG	4 cut(s)	135, 165, 258, 275
AclWI	GGATC	1 cut(s)	500
AcoI	YGGCCR	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	516
AcyI	GRCGYC	2 cut(s)	168, 180
AdeI	CACNNNGTG	1 cut(s)	421
AfiI	CCNNNNNNNGG	4 cut(s)	368, 387, 433, 756
AgeI	ACCGGT	1 cut(s)	620
AgsI	TTSAA	2 cut(s)	615, 779
AhdI	GACNNNNNGTC	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	3 cut(s)	19, 464, 746
AluI	AGCT	3 cut(s)	19, 464, 746
Alw21I	GWGCWC	2 cut(s)	288, 426
Alw26I	GTCTC	1 cut(s)	579
AlwI	GGATC	1 cut(s)	500
AlwNI	CAGNNNCTG	2 cut(s)	22, 793
AoxI	GGCC	5 cut(s)	207, 259, 391, 435, 649
ApeKI	GCWGC	6 cut(s)	16, 19, 22, 25, 291, 711
ApoI	RAATTY	1 cut(s)	516
AsiGI	ACCGGT	1 cut(s)	620
AspLEI	GCGC	6 cut(s)	137, 182, 258, 275, 309, 359
AspS9I	GGNCC	3 cut(s)	157, 391, 649
AsuC2I	CCSGG	1 cut(s)	321
AsuHPI	GGTGA	5 cut(s)	214, 331, 367, 517, 556
AvaII	GGWCC	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	326
BanI	GGYRCC	2 cut(s)	179, 323
BanII	GRGCYC	1 cut(s)	723
BarI	GAAGNNNNNNTAC	2 cut(s)	197, 229
Bbv12I	GWGCWC	2 cut(s)	288, 426
BbvI	GCAGC	6 cut(s)	6, 9, 12, 28, 278, 723
BccI	CCATC	5 cut(s)	119, 338, 437, 527, 710
BceAI	ACGGC	3 cut(s)	155, 232, 385
BciT130I	CCWGG	1 cut(s)	419
BclI	TGATCA	1 cut(s)	561
BcnI	CCSGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	579
BfaI	CTAG	2 cut(s)	50, 708
BfmI	CTRYAG	1 cut(s)	14
BfoI	RGCGCY	1 cut(s)	183
BglII	AGATCT	1 cut(s)	264
BlpI	GCTNAGC	1 cut(s)	236
Bme1390I	CCNGG	2 cut(s)	321, 419
Bme18I	GGWCC	1 cut(s)	157
BmeRI	GACNNNNNGTC	1 cut(s)	124
BmgT120I	GGNCC	3 cut(s)	157, 391, 649
BmiI	GGNNCC	5 cut(s)	159, 181, 325, 392, 650
BmrFI	CCNGG	2 cut(s)	321, 419
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
Bpu1102I	GCTNAGC	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	321
BsaHI	GRCGYC	2 cut(s)	168, 180
BsaJI	CCNNGG	1 cut(s)	750
BsaWI	WCCGGW	1 cut(s)	620
BsaXI	ACNNNNNCTCC	4 cut(s)	186, 216, 576, 606
Bsc4I	CCNNNNNNNGG	4 cut(s)	368, 387, 433, 756
Bse118I	RCCGGY	2 cut(s)	209, 620
Bse1I	ACTGG	3 cut(s)	125, 481, 662
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	750
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	4 cut(s)	368, 387, 433, 756
BseMII	CTCAG	2 cut(s)	227, 567
BseNI	ACTGG	3 cut(s)	125, 481, 662
BseRI	GAGGAG	3 cut(s)	23, 26, 29
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	6 cut(s)	6, 9, 12, 28, 278, 723
Bsh1236I	CGCG	4 cut(s)	135, 165, 258, 275
BshFI	GGCC	5 cut(s)	209, 261, 393, 437, 651
BshNI	GGYRCC	2 cut(s)	179, 323
BshTI	ACCGGT	1 cut(s)	620
BsiHKAI	GWGCWC	2 cut(s)	288, 426
BsiSI	CCGG	3 cut(s)	210, 320, 621
BslFI	GGGAC	1 cut(s)	651
BslI	CCNNNNNNNGG	4 cut(s)	368, 387, 433, 756
BsmAI	GTCTC	1 cut(s)	579
BsmFI	GGGAC	1 cut(s)	651
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	5 cut(s)	209, 261, 393, 437, 651
Bsp1286I	GDGCHC	4 cut(s)	288, 326, 426, 723
Bsp143I	GATC	6 cut(s)	264, 447, 492, 561, 603, 673
Bsp1720I	GCTNAGC	1 cut(s)	236
BspANI	GGCC	5 cut(s)	209, 261, 393, 437, 651
BspCNI	CTCAG	2 cut(s)	228, 566
BspFNI	CGCG	4 cut(s)	135, 165, 258, 275
BspLI	GGNNCC	5 cut(s)	159, 181, 325, 392, 650
BspMAI	CTGCAG	1 cut(s)	18
BspPI	GGATC	1 cut(s)	500
BspT107I	GGYRCC	2 cut(s)	179, 323
BsrBI	CCGCTC	1 cut(s)	31
BsrFI	RCCGGY	2 cut(s)	209, 620
BsrI	ACTGG	3 cut(s)	125, 481, 662
BssAI	RCCGGY	2 cut(s)	209, 620
BssECI	CCNNGG	1 cut(s)	750
BssMI	GATC	6 cut(s)	264, 447, 492, 561, 603, 673
BssNI	GRCGYC	2 cut(s)	168, 180
BssT1I	CCWWGG	1 cut(s)	750
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	3 cut(s)	229, 386, 727
BstACI	GRCGYC	2 cut(s)	168, 180
BstAPI	GCANNNNNTGC	2 cut(s)	22, 421
BstC8I	GCNNGC	6 cut(s)	133, 184, 211, 242, 277, 466
BstDEI	CTNAG	2 cut(s)	236, 553
BstF5I	GGATG	1 cut(s)	80
BstFNI	CGCG	4 cut(s)	135, 165, 258, 275
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	6 cut(s)	137, 182, 258, 275, 309, 359
BstKTI	GATC	6 cut(s)	267, 450, 495, 564, 606, 676
BstMAI	GTCTC	1 cut(s)	579
BstMBI	GATC	6 cut(s)	264, 447, 492, 561, 603, 673
BstNI	CCWGG	1 cut(s)	419
BstNSI	RCATGY	2 cut(s)	307, 665
BstSCI	CCNGG	2 cut(s)	319, 417
BstSFI	CTRYAG	1 cut(s)	14
BstSLI	GKGCMC	1 cut(s)	326
BstUI	CGCG	4 cut(s)	135, 165, 258, 275
BstV1I	GCAGC	6 cut(s)	6, 9, 12, 28, 278, 723
BstX2I	RGATCY	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	264
BsuRI	GGCC	5 cut(s)	209, 261, 393, 437, 651
BtgZI	GCGATG	1 cut(s)	729
BtsCI	GGATG	1 cut(s)	80
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	3 cut(s)	394, 561, 673
Cac8I	GCNNGC	6 cut(s)	133, 184, 211, 242, 277, 466
CaiI	CAGNNNCTG	2 cut(s)	22, 793
CfoI	GCGC	6 cut(s)	137, 182, 258, 275, 309, 359
Cfr10I	RCCGGY	2 cut(s)	209, 620
Cfr13I	GGNCC	3 cut(s)	157, 391, 649
CseI	GACGC	2 cut(s)	176, 283
CsiI	ACCWGGT	1 cut(s)	417
CspAI	ACCGGT	1 cut(s)	620
CviAII	CATG	3 cut(s)	220, 304, 662
DdeI	CTNAG	2 cut(s)	236, 553
DinI	GGCGCC	1 cut(s)	181
DpnI	GATC	6 cut(s)	266, 449, 494, 563, 605, 675
DpnII	GATC	6 cut(s)	264, 447, 492, 561, 603, 673
DraIII	CACNNNGTG	1 cut(s)	421
DriI	GACNNNNNGTC	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	259
Eam1105I	GACNNNNNGTC	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	750
Eco147I	AGGCCT	1 cut(s)	437
Eco24I	GRGCYC	1 cut(s)	723
Eco47I	GGWCC	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	417
EcoT14I	CCWWGG	1 cut(s)	750
EcoT38I	GRGCYC	1 cut(s)	723
EgeI	GGCGCC	1 cut(s)	181
EheI	GGCGCC	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	750
FaeI	CATG	3 cut(s)	223, 307, 665
FaiI	YATR	6 cut(s)	221, 305, 473, 530, 590, 663
FaqI	GGGAC	1 cut(s)	651
FatI	CATG	3 cut(s)	219, 303, 661
FauI	CCCGC	1 cut(s)	170
FbaI	TGATCA	1 cut(s)	561
FokI	GGATG	1 cut(s)	67
FriOI	GRGCYC	1 cut(s)	723
FspBI	CTAG	2 cut(s)	50, 708
GlaI	GCGC	6 cut(s)	136, 181, 257, 274, 308, 358
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	5 cut(s)	209, 261, 393, 437, 651
HapII	CCGG	3 cut(s)	210, 320, 621
HgaI	GACGC	2 cut(s)	176, 283
HhaI	GCGC	6 cut(s)	137, 182, 258, 275, 309, 359
Hin1I	GRCGYC	2 cut(s)	168, 180
Hin1II	CATG	3 cut(s)	223, 307, 665
Hin6I	GCGC	6 cut(s)	135, 180, 256, 273, 307, 357
HinP1I	GCGC	6 cut(s)	135, 180, 256, 273, 307, 357
HpaII	CCGG	3 cut(s)	210, 320, 621
HphI	GGTGA	5 cut(s)	214, 331, 367, 517, 556
Hpy188I	TCNGA	2 cut(s)	157, 584
Hpy188III	TCNNGA	2 cut(s)	442, 615
Hpy99I	CGWCG	4 cut(s)	170, 176, 299, 386
HpyAV	CCTTC	5 cut(s)	87, 199, 448, 503, 773
HpyCH4III	ACNGT	3 cut(s)	229, 386, 727
HpyCH4IV	ACGT	1 cut(s)	741
HpyCH4V	TGCA	3 cut(s)	16, 315, 399
HpyF3I	CTNAG	2 cut(s)	236, 553
HpySE526I	ACGT	1 cut(s)	741
Hsp92I	GRCGYC	2 cut(s)	168, 180
Hsp92II	CATG	3 cut(s)	223, 307, 665
HspAI	GCGC	6 cut(s)	135, 180, 256, 273, 307, 357
KasI	GGCGCC	1 cut(s)	179
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	6 cut(s)	264, 447, 492, 561, 603, 673
LmnI	GCTCC	4 cut(s)	36, 291, 429, 751
Lsp1109I	GCAGC	6 cut(s)	6, 9, 12, 28, 278, 723
MabI	ACCWGGT	1 cut(s)	417
MaeI	CTAG	2 cut(s)	50, 708
MaeII	ACGT	1 cut(s)	741
MaeIII	GTNAC	5 cut(s)	3, 88, 337, 703, 727
MalI	GATC	6 cut(s)	266, 449, 494, 563, 605, 675
MbiI	CCGCTC	1 cut(s)	31
MboI	GATC	6 cut(s)	264, 447, 492, 561, 603, 673
MboII	GAAGA	2 cut(s)	457, 613
MflI	RGATCY	1 cut(s)	264
MhlI	GDGCHC	4 cut(s)	288, 326, 426, 723
MluCI	AATT	2 cut(s)	516, 643
Mly113I	GGCGCC	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	562
MroNI	GCCGGC	1 cut(s)	209
MslI	CAYNNNNRTG	1 cut(s)	666
MspA1I	CMGCKG	2 cut(s)	19, 291
MspI	CCGG	3 cut(s)	210, 320, 621
MspR9I	CCNGG	2 cut(s)	321, 419
Mva1269I	GAATGC	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	419
MvnI	CGCG	4 cut(s)	135, 165, 258, 275
NaeI	GCCGGC	1 cut(s)	211
NarI	GGCGCC	1 cut(s)	180
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	6 cut(s)	264, 447, 492, 561, 603, 673
NgoMIV	GCCGGC	1 cut(s)	209
NlaIII	CATG	3 cut(s)	223, 307, 665
NlaIV	GGNNCC	5 cut(s)	159, 181, 325, 392, 650
NmuCI	GTSAC	4 cut(s)	3, 88, 337, 703
NspI	RCATGY	2 cut(s)	307, 665
PceI	AGGCCT	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PctI	GAATGC	1 cut(s)	315
PdiI	GCCGGC	1 cut(s)	211
PflFI	GACNNNGTC	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	756
PinAI	ACCGGT	1 cut(s)	620
PluTI	GGCGCC	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	5 cut(s)	159, 181, 325, 392, 650
PspPI	GGNCC	3 cut(s)	157, 391, 649
PstI	CTGCAG	1 cut(s)	18
PstNI	CAGNNNCTG	2 cut(s)	22, 793
PsuI	RGATCY	1 cut(s)	264
PsyI	GACNNNGTC	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	666
Sau3AI	GATC	6 cut(s)	264, 447, 492, 561, 603, 673
Sau96I	GGNCC	3 cut(s)	157, 391, 649
ScrFI	CCNGG	2 cut(s)	321, 419
SduI	GDGCHC	4 cut(s)	288, 326, 426, 723
SexAI	ACCWGGT	1 cut(s)	417
SfcI	CTRYAG	1 cut(s)	14
SfoI	GGCGCC	1 cut(s)	181
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	666
Sse9I	AATT	2 cut(s)	516, 643
SseBI	AGGCCT	1 cut(s)	437
SspDI	GGCGCC	1 cut(s)	179
SspMI	CTAG	2 cut(s)	50, 708
StuI	AGGCCT	1 cut(s)	437
StyD4I	CCNGG	2 cut(s)	319, 417
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	3 cut(s)	229, 386, 727
TaiI	ACGT	1 cut(s)	744
TaqI	TCGA	5 cut(s)	252, 297, 432, 441, 699
TasI	AATT	2 cut(s)	516, 643
TauI	GCSGC	6 cut(s)	31, 152, 180, 189, 261, 273
TscAI	CASTG	3 cut(s)	401, 561, 673
TseFI	GTSAC	4 cut(s)	3, 88, 337, 703
TseI	GCWGC	6 cut(s)	16, 19, 22, 25, 291, 711
Tsp45I	GTSAC	4 cut(s)	3, 88, 337, 703
TspDTI	ATGAA	1 cut(s)	69
TspGWI	ACGGA	2 cut(s)	76, 207
TspRI	CASTG	3 cut(s)	401, 561, 673
Tth111I	GACNNNGTC	1 cut(s)	170
Van91I	CCANNNNNTGG	1 cut(s)	756
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	1 cut(s)	516
XceI	RCATGY	2 cut(s)	307, 665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XspI	CTAG	2 cut(s)	50, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.