Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0010451

Physical Location & Seq

Genomic Coordinates Forward (+)

35645639 .. 35647888

Gene Structure 2250 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1279500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTTTTCTCTTTCCGTTTTTACCTGTACTCTGTCTCTCCCTCTCAGTCTCACTCACTCATTCACACTAATCCTTCCTCGAACGAGAAAGCAAATTAATAACGCCGACGACAAAAGGCCGACGGCGTTAAAACAAAGAACGGCAGAAATGTCGCCGCCAGCTCTCGCCCTGTTCCTCCTCCTCCCACTCGCGCTCGCCTCCACCGCCCTCTCCCACTCCCACTCCTCCTCCCCCTTCCCCACCGCCTCACCCTCCCTCTACGACTGGACCTCCGCACGCGCCACCTACTACGCTGCCGTCGACCCCCGCGACAAAGTCGGCGGTGCGTGCGGGTACGGAGACCTCGAGAAGGCCGGGTACGGGCTGGCGACGGTGGGGCTGAGCGAGGCGCTGTTCGAGCGGGGCCAGATCTGCGGCGCGTGCTTCGAGGTCCGGTGCGTGGAGGACATGCGGTGGTGCATTCCTGGGACGTCGATTATCGTGACGGCGACCAACTTCTGCCCGCCGAATTACGGGTTCACGGCGGAAGGCGGGGGCCACTGCAACTCGCCGAACAAGCATTTGGTGCTTCCCATCGAGGCGTTTGAGAAGATCGCTATTTGGAAGGCTGGCAATATGGCCGTCCAGTATCGTAGGATCAAGTGTAGAAAGGAAGGAGGAATTCGTTTCACCATAGATGGTTCTAATATCTTTATCTCAGTGCTCATCAGCAATGTTGGTGGTGCTGGAGACATTGTTGCCGTGAAGATCAAGGGTTCAAGAACCGGCTGGCTTCCAATGGGACGGAATTGGGGCCAAAACTGGCATGCAAGTGCCGATTTACTGAACCAACCTCTTTCTTTCGAGGTCACAAGCAGCGATGGGCGCACAGTTACATCTTACAACGTTGCTCCCAAGGCTTGGAACTTTGGGCAGACTTTTGAAGGGAAGCAGTTTGATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

315

Amino Acids

34.05

Weight (kDa)

8.83

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	125 - 210	1e-17	Lytic transglycolase
Expansin_C	PF01357	221 - 298	1.2e-29	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03220
fragaria_vesca	FvH4_1g27660 FvH4_1g27740 FvH4_3g13760
malus_domestica	MD09G1279500.v1.1 MD17G1271500.v1.1
prunus_persica	Prupe.3G014800_v2.0.a1 Prupe.3G014800_v2.0.a1
pyrus_communis	pycom09g18760 pycom17g26980
rosa_chinensis	RchiOBHm_Chr3g0488771
rosa_laevigata	RLG00000022922
rosa_multiflora	Rmu_sc0001208.1_g000048 Rmu_sc0006246.1_g000010
rosa_roxburghii	Rroxscaffold_6G00393860
rosa_rugosa	Rorug03G0241600
rosa_samantha	Rh3AG289700 Rh3BG326800 Rh3CG324200 Rh3DG322700
rosa_wichuraiana	Rw3G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	473
AccB7I	CCANNNNNTGG	1 cut(s)	900
AccBSI	CCGCTC	1 cut(s)	400
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	4 cut(s)	191, 279, 309, 419
AclI	AACGTT	1 cut(s)	885
AclWI	GGATC	1 cut(s)	644
AcoI	YGGCCR	1 cut(s)	618
AcsI	RAATTY	1 cut(s)	660
AcyI	GRCGYC	1 cut(s)	470
AfaI	GTAC	3 cut(s)	28, 335, 359
AfiI	CCNNNNNNNGG	5 cut(s)	349, 360, 439, 512, 900
AgsI	TTSAA	2 cut(s)	759, 923
AjnI	CCWGG	1 cut(s)	463
AjuI	GAANNNNNNNTTGG	2 cut(s)	545, 577
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
Alw21I	GWGCWC	1 cut(s)	705
Alw26I	GTCTC	4 cut(s)	39, 53, 333, 723
AlwI	GGATC	1 cut(s)	644
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	6 cut(s)	116, 351, 403, 535, 618, 793
ApeKI	GCWGC	2 cut(s)	293, 855
ApoI	RAATTY	1 cut(s)	660
AseI	ATTAAT	1 cut(s)	96
AspLEI	GCGC	5 cut(s)	193, 281, 391, 419, 867
AspS9I	GGNCC	5 cut(s)	267, 403, 430, 535, 793
AsuC2I	CCSGG	1 cut(s)	355
AsuHPI	GGTGA	2 cut(s)	240, 661
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	2 cut(s)	267, 430
BarI	GAAGNNNNNNTAC	2 cut(s)	341, 373
Bbv12I	GWGCWC	1 cut(s)	705
BbvI	GCAGC	2 cut(s)	280, 867
BccI	CCATC	3 cut(s)	581, 671, 854
BceAI	ACGGC	7 cut(s)	138, 156, 281, 501, 537, 605, 725
BcgI	CGANNNNNNTGC	2 cut(s)	132, 166
BciT130I	CCWGG	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	355
BcoDI	GTCTC	4 cut(s)	39, 53, 333, 723
BfoI	RGCGCY	1 cut(s)	392
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	4 cut(s)	155, 294, 415, 856
BlpI	GCTNAGC	1 cut(s)	380
BlsI	GCNGC	4 cut(s)	156, 295, 416, 857
Bme1390I	CCNGG	2 cut(s)	355, 465
Bme18I	GGWCC	2 cut(s)	267, 430
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	5 cut(s)	267, 403, 430, 535, 793
BmiI	GGNNCC	3 cut(s)	404, 536, 794
BmrFI	CCNGG	2 cut(s)	355, 465
BpmI	CTGGAG	1 cut(s)	747
Bpu1102I	GCTNAGC	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	355
BsaHI	GRCGYC	1 cut(s)	470
BsaI	GGTCTC	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	464, 894
BsaWI	WCCGGW	1 cut(s)	432
BsaXI	ACNNNNNCTCC	8 cut(s)	206, 212, 236, 242, 254, 284, 720, 750
Bsc4I	CCNNNNNNNGG	5 cut(s)	349, 360, 439, 512, 900
Bse118I	RCCGGY	1 cut(s)	764
Bse1I	ACTGG	3 cut(s)	269, 625, 806
Bse3DI	GCAATG	1 cut(s)	718
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	2 cut(s)	464, 894
BseLI	CCNNNNNNNGG	5 cut(s)	349, 360, 439, 512, 900
BseMI	GCAATG	1 cut(s)	718
BseMII	CTCAG	3 cut(s)	58, 371, 711
BseNI	ACTGG	3 cut(s)	269, 625, 806
BseRI	GAGGAG	4 cut(s)	167, 170, 214, 217
BseXI	GCAGC	2 cut(s)	280, 867
Bsh1236I	CGCG	4 cut(s)	191, 279, 309, 419
BshFI	GGCC	6 cut(s)	118, 353, 405, 537, 620, 795
BsiHKAI	GWGCWC	1 cut(s)	705
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	3 cut(s)	354, 433, 765
BslFI	GGGAC	2 cut(s)	481, 795
BslI	CCNNNNNNNGG	5 cut(s)	349, 360, 439, 512, 900
BsmAI	GTCTC	4 cut(s)	39, 53, 333, 723
BsmFI	GGGAC	2 cut(s)	481, 795
BsmI	GAATGC	1 cut(s)	459
BsnI	GGCC	6 cut(s)	118, 353, 405, 537, 620, 795
Bso31I	GGTCTC	1 cut(s)	333
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	705
Bsp143I	GATC	4 cut(s)	408, 591, 636, 747
Bsp1720I	GCTNAGC	1 cut(s)	380
BspANI	GGCC	6 cut(s)	118, 353, 405, 537, 620, 795
BspCNI	CTCAG	3 cut(s)	57, 372, 710
BspFNI	CGCG	4 cut(s)	191, 279, 309, 419
BspLI	GGNNCC	3 cut(s)	404, 536, 794
BspPI	GGATC	1 cut(s)	644
BspTNI	GGTCTC	1 cut(s)	333
BsrBI	CCGCTC	1 cut(s)	400
BsrDI	GCAATG	1 cut(s)	718
BsrFI	RCCGGY	1 cut(s)	764
BsrI	ACTGG	3 cut(s)	269, 625, 806
BssAI	RCCGGY	1 cut(s)	764
BssECI	CCNNGG	2 cut(s)	464, 894
BssMI	GATC	4 cut(s)	408, 591, 636, 747
BssNI	GRCGYC	1 cut(s)	470
BssT1I	CCWWGG	1 cut(s)	894
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	373, 871
BstACI	GRCGYC	1 cut(s)	470
BstAPI	GCANNNNNTGC	1 cut(s)	565
BstDEI	CTNAG	3 cut(s)	44, 380, 697
BstENI	CCTNNNNNAGG	1 cut(s)	347
BstFNI	CGCG	4 cut(s)	191, 279, 309, 419
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	5 cut(s)	193, 281, 391, 419, 867
BstKTI	GATC	4 cut(s)	411, 594, 639, 750
BstMAI	GTCTC	4 cut(s)	39, 53, 333, 723
BstMBI	GATC	4 cut(s)	408, 591, 636, 747
BstMWI	GCNNNNNNNGC	9 cut(s)	203, 327, 397, 411, 420, 556, 565, 864, 896
BstNI	CCWGG	1 cut(s)	465
BstNSI	RCATGY	2 cut(s)	451, 809
BstSCI	CCNGG	2 cut(s)	353, 463
BstUI	CGCG	4 cut(s)	191, 279, 309, 419
BstV1I	GCAGC	2 cut(s)	280, 867
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
BsuRI	GGCC	6 cut(s)	118, 353, 405, 537, 620, 795
BtgZI	GCGATG	1 cut(s)	873
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	2 cut(s)	538, 705
CfoI	GCGC	5 cut(s)	193, 281, 391, 419, 867
Cfr10I	RCCGGY	1 cut(s)	764
Cfr13I	GGNCC	5 cut(s)	267, 403, 430, 535, 793
Csp6I	GTAC	3 cut(s)	27, 334, 358
CspCI	CAANNNNNGTGG	2 cut(s)	700, 735
CviAII	CATG	2 cut(s)	448, 806
CviQI	GTAC	3 cut(s)	27, 334, 358
DdeI	CTNAG	3 cut(s)	44, 380, 697
DpnI	GATC	4 cut(s)	410, 593, 638, 749
DpnII	GATC	4 cut(s)	408, 591, 636, 747
EaeI	YGGCCR	1 cut(s)	618
EciI	GGCGGA	1 cut(s)	539
Eco130I	CCWWGG	1 cut(s)	894
Eco31I	GGTCTC	1 cut(s)	333
Eco47I	GGWCC	2 cut(s)	267, 430
Eco88I	CYCGRG	1 cut(s)	344
EcoNI	CCTNNNNNAGG	1 cut(s)	347
EcoRI	GAATTC	1 cut(s)	660
EcoRII	CCWGG	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	894
ErhI	CCWWGG	1 cut(s)	894
FaeI	CATG	2 cut(s)	451, 809
FaiI	YATR	4 cut(s)	449, 617, 674, 807
FaqI	GGGAC	2 cut(s)	481, 795
FatI	CATG	2 cut(s)	447, 805
FauI	CCCGC	5 cut(s)	314, 323, 393, 510, 524
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	4 cut(s)	155, 294, 415, 856
Fsp4HI	GCNGC	4 cut(s)	155, 294, 415, 856
GlaI	GCGC	5 cut(s)	192, 280, 390, 418, 866
GluI	GCNGC	4 cut(s)	155, 294, 415, 856
GsuI	CTGGAG	1 cut(s)	747
HaeII	RGCGCY	1 cut(s)	392
HaeIII	GGCC	6 cut(s)	118, 353, 405, 537, 620, 795
HapII	CCGG	3 cut(s)	354, 433, 765
HhaI	GCGC	5 cut(s)	193, 281, 391, 419, 867
Hin1I	GRCGYC	1 cut(s)	470
Hin1II	CATG	2 cut(s)	451, 809
Hin6I	GCGC	5 cut(s)	191, 279, 389, 417, 865
HinP1I	GCGC	5 cut(s)	191, 279, 389, 417, 865
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	1 cut(s)	938
HpaII	CCGG	3 cut(s)	354, 433, 765
HphI	GGTGA	2 cut(s)	240, 661
Hpy166II	GTNNAC	2 cut(s)	301, 519
Hpy188III	TCNNGA	3 cut(s)	346, 481, 759
Hpy8I	GTNNAC	2 cut(s)	301, 519
Hpy99I	CGWCG	5 cut(s)	110, 124, 302, 373, 475
HpyAV	CCTTC	7 cut(s)	83, 244, 343, 521, 598, 647, 917
HpyCH4III	ACNGT	2 cut(s)	373, 871
HpyCH4IV	ACGT	2 cut(s)	470, 885
HpyCH4V	TGCA	3 cut(s)	459, 543, 809
HpyF10VI	GCNNNNNNNGC	9 cut(s)	203, 327, 397, 411, 420, 556, 565, 864, 896
HpyF3I	CTNAG	3 cut(s)	44, 380, 697
HpySE526I	ACGT	2 cut(s)	470, 885
Hsp92I	GRCGYC	1 cut(s)	470
Hsp92II	CATG	2 cut(s)	451, 809
HspAI	GCGC	5 cut(s)	191, 279, 389, 417, 865
Kzo9I	GATC	4 cut(s)	408, 591, 636, 747
LmnI	GCTCC	1 cut(s)	895
Lsp1109I	GCAGC	2 cut(s)	280, 867
MaeII	ACGT	2 cut(s)	470, 885
MaeIII	GTNAC	3 cut(s)	481, 847, 871
MalI	GATC	4 cut(s)	410, 593, 638, 749
MbiI	CCGCTC	1 cut(s)	400
MboI	GATC	4 cut(s)	408, 591, 636, 747
MboII	GAAGA	2 cut(s)	601, 757
MflI	RGATCY	1 cut(s)	408
MhlI	GDGCHC	1 cut(s)	705
MluCI	AATT	4 cut(s)	93, 508, 660, 787
MseI	TTAA	3 cut(s)	96, 128, 943
MslI	CAYNNNNRTG	1 cut(s)	810
MspI	CCGG	3 cut(s)	354, 433, 765
MspR9I	CCNGG	2 cut(s)	355, 465
Mva1269I	GAATGC	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	465
MvnI	CGCG	4 cut(s)	191, 279, 309, 419
MwoI	GCNNNNNNNGC	9 cut(s)	203, 327, 397, 411, 420, 556, 565, 864, 896
NciI	CCSGG	1 cut(s)	355
NdeII	GATC	4 cut(s)	408, 591, 636, 747
NlaIII	CATG	2 cut(s)	451, 809
NlaIV	GGNNCC	3 cut(s)	404, 536, 794
NmuCI	GTSAC	2 cut(s)	481, 847
NspI	RCATGY	2 cut(s)	451, 809
PaeI	GCATGC	1 cut(s)	809
PaeR7I	CTCGAG	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	3 cut(s)	297, 306, 342
PctI	GAATGC	1 cut(s)	459
PfeI	GAWTC	1 cut(s)	938
PflFI	GACNNNGTC	1 cut(s)	314
PflMI	CCANNNNNTGG	1 cut(s)	900
PkrI	GCNGC	4 cut(s)	156, 295, 416, 857
PshBI	ATTAAT	1 cut(s)	96
Psp1406I	AACGTT	1 cut(s)	885
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	3 cut(s)	404, 536, 794
PspPI	GGNCC	5 cut(s)	267, 403, 430, 535, 793
PsuI	RGATCY	1 cut(s)	408
PsyI	GACNNNGTC	1 cut(s)	314
RsaI	GTAC	3 cut(s)	28, 335, 359
RsaNI	GTAC	3 cut(s)	27, 334, 358
RseI	CAYNNNNRTG	1 cut(s)	810
SalI	GTCGAC	1 cut(s)	299
SaqAI	TTAA	3 cut(s)	96, 128, 943
SatI	GCNGC	4 cut(s)	155, 294, 415, 856
Sau3AI	GATC	4 cut(s)	408, 591, 636, 747
Sau96I	GGNCC	5 cut(s)	267, 403, 430, 535, 793
ScrFI	CCNGG	2 cut(s)	355, 465
SduI	GDGCHC	1 cut(s)	705
Sfr274I	CTCGAG	1 cut(s)	344
SinI	GGWCC	2 cut(s)	267, 430
SlaI	CTCGAG	1 cut(s)	344
SmiMI	CAYNNNNRTG	1 cut(s)	810
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
SphI	GCATGC	1 cut(s)	809
Sse9I	AATT	4 cut(s)	93, 508, 660, 787
StyD4I	CCNGG	2 cut(s)	353, 463
StyI	CCWWGG	1 cut(s)	894
TaaI	ACNGT	2 cut(s)	373, 871
TaiI	ACGT	2 cut(s)	473, 888
TaqI	TCGA	8 cut(s)	79, 300, 345, 396, 426, 473, 576, 843
TasI	AATT	4 cut(s)	93, 508, 660, 787
TatI	WGTACW	1 cut(s)	26
TauI	GCSGC	2 cut(s)	157, 417
TfiI	GAWTC	1 cut(s)	938
Tru1I	TTAA	3 cut(s)	96, 128, 943
Tru9I	TTAA	3 cut(s)	96, 128, 943
TscAI	CASTG	2 cut(s)	545, 705
TseFI	GTSAC	2 cut(s)	481, 847
TseI	GCWGC	2 cut(s)	293, 855
Tsp45I	GTSAC	2 cut(s)	481, 847
TspGWI	ACGGA	3 cut(s)	4, 351, 799
TspRI	CASTG	2 cut(s)	545, 705
Tth111I	GACNNNGTC	1 cut(s)	314
Van91I	CCANNNNNTGG	1 cut(s)	900
VpaK11BI	GGWCC	2 cut(s)	267, 430
VspI	ATTAAT	1 cut(s)	96
XagI	CCTNNNNNAGG	1 cut(s)	347
XapI	RAATTY	1 cut(s)	660
XceI	RCATGY	2 cut(s)	451, 809
XhoI	CTCGAG	1 cut(s)	344
XmiI	GTMKAC	1 cut(s)	300
ZraI	GACGTC	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.