Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010451

Physical Location & Seq

Genomic Coordinates Forward (+)

19350462 .. 19352586

Gene Structure 2125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTCGCCGCCGACCCTAACGCCGCTGCTCCTCCTCCTCCTATTCACACCACCCCTCCTCTCTCACTCAATCTGCGAATGGCAGTCCGCACGCGCCACCTACTACGCCGCCTCCGACCCCCGCGACGCGGTGGGCGGCGCGTGCGGCTACGGCGACCTGATGAAGGGCGGTTTCGGAATGGCGACGGTGGGGCTGAGCGAGGCGCTGTTCGAGCGTGGCCAGATCTGCGGCGCGTGCTTGGAGGTCCGGTGCGTGGAGGACATGCGGTGGTGCATTCCCGGAACCTCCATCATATTAACGGCGACGAACTTCTGCGCTCCGAACTACGGCTTCACCGCGGACGGTGGGGGCCACTGTAACCCTCCCAATAAGCACTTGGTCCTCCCGATTGAGGCCTTTGAGAAGATCGCTATCTGGAAAGCTGGTAATATGCCGGTCCAGTATCGCAGGATCAAGTGTAGAAAGGAGGGAGGAGTTCGTTTTACTATAGATGGGTCTAGTATCTTTATTTCCGTGCTGATCAGCAATGTTGCCGGCGCTGGAGACATAGCTGCAGTGAAGATCAAGGGTTCAACAACTGGTTGGCTTCCAATGGGACGGAATTGGGGTCAAAACTGGCATATAAATGCTGATTTGAAGAATCAGCCTCTTTCTTTTGAGGTCACTAGTAGCGATGGGTTGACGCTCACATCTTACAACGTTGCTCCCAAGAATCGGAACTTTGGGCAGACTTTTGAAGGGAAGCAGTTCGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

253

Amino Acids

27.24

Weight (kDa)

8.06

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	63 - 148	3.8e-16	Lytic transglycolase
Expansin_C	PF01357	159 - 236	2.6e-29	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03220
fragaria_vesca	FvH4_1g27660 FvH4_1g27740 FvH4_3g13760
malus_domestica	MD09G1279500.v1.1 MD17G1271500.v1.1
prunus_persica	Prupe.3G014800_v2.0.a1 Prupe.3G014800_v2.0.a1
pyrus_communis	pycom09g18760 pycom17g26980
rosa_chinensis	RchiOBHm_Chr3g0488771
rosa_laevigata	RLG00000022922
rosa_multiflora	Rmu_sc0001208.1_g000048 Rmu_sc0006246.1_g000010
rosa_roxburghii	Rroxscaffold_6G00393860
rosa_rugosa	Rorug03G0241600
rosa_samantha	Rh3AG289700 Rh3BG326800 Rh3CG324200 Rh3DG322700
rosa_wichuraiana	Rw3G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	6 cut(s)	93, 123, 128, 140, 233, 338
AclI	AACGTT	1 cut(s)	699
AclWI	GGATC	1 cut(s)	458
AcoI	YGGCCR	1 cut(s)	217
AfiI	CCNNNNNNNGG	6 cut(s)	127, 163, 253, 326, 391, 714
AgsI	TTSAA	3 cut(s)	573, 637, 737
AhlI	ACTAGT	1 cut(s)	665
AluBI	AGCT	2 cut(s)	422, 551
AluI	AGCT	2 cut(s)	422, 551
Alw26I	GTCTC	1 cut(s)	537
AlwI	GGATC	1 cut(s)	458
AoxI	GGCC	3 cut(s)	217, 349, 393
ApeKI	GCWGC	2 cut(s)	25, 551
Asp700I	GAANNNNTTC	1 cut(s)	746
AspLEI	GCGC	6 cut(s)	95, 140, 205, 233, 317, 539
AspS9I	GGNCC	4 cut(s)	244, 349, 379, 436
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	325
AvaII	GGWCC	3 cut(s)	244, 379, 436
BalI	TGGCCA	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	12, 538
BccI	CCATC	3 cut(s)	296, 485, 668
BceAI	ACGGC	3 cut(s)	166, 315, 343
BclI	TGATCA	1 cut(s)	519
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	537
BcuI	ACTAGT	1 cut(s)	665
BfaI	CTAG	2 cut(s)	498, 666
BfmI	CTRYAG	2 cut(s)	486, 552
BfoI	RGCGCY	2 cut(s)	206, 540
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	8 cut(s)	8, 23, 26, 108, 136, 145, 229, 552
BlpI	GCTNAGC	1 cut(s)	194
BlsI	GCNGC	8 cut(s)	9, 24, 27, 109, 137, 146, 230, 553
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	3 cut(s)	244, 379, 436
BmgT120I	GGNCC	4 cut(s)	244, 349, 379, 436
BmiI	GGNNCC	2 cut(s)	283, 350
BmrFI	CCNGG	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	561
Bpu1102I	GCTNAGC	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	279
BsaBI	GATNNNNATC	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	246
BsaXI	ACNNNNNCTCC	6 cut(s)	39, 69, 95, 125, 233, 263
Bsc4I	CCNNNNNNNGG	6 cut(s)	127, 163, 253, 326, 391, 714
Bse118I	RCCGGY	2 cut(s)	433, 533
Bse1I	ACTGG	3 cut(s)	439, 583, 620
Bse3DI	GCAATG	1 cut(s)	532
Bse8I	GATNNNNATC	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	336
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	6 cut(s)	127, 163, 253, 326, 391, 714
BseMI	GCAATG	1 cut(s)	532
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	3 cut(s)	439, 583, 620
BseRI	GAGGAG	5 cut(s)	20, 23, 26, 47, 486
BseXI	GCAGC	2 cut(s)	12, 538
Bsh1236I	CGCG	6 cut(s)	93, 123, 128, 140, 233, 338
BshFI	GGCC	3 cut(s)	219, 351, 395
BsiSI	CCGG	4 cut(s)	247, 279, 434, 534
BslFI	GGGAC	1 cut(s)	609
BslI	CCNNNNNNNGG	6 cut(s)	127, 163, 253, 326, 391, 714
BsmAI	GTCTC	1 cut(s)	537
BsmFI	GGGAC	1 cut(s)	609
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	3 cut(s)	219, 351, 395
Bsp143I	GATC	5 cut(s)	222, 405, 450, 519, 561
Bsp1720I	GCTNAGC	1 cut(s)	194
BspANI	GGCC	3 cut(s)	219, 351, 395
BspCNI	CTCAG	1 cut(s)	186
BspFNI	CGCG	6 cut(s)	93, 123, 128, 140, 233, 338
BspLI	GGNNCC	2 cut(s)	283, 350
BspMAI	CTGCAG	1 cut(s)	556
BspPI	GGATC	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	532
BsrFI	RCCGGY	2 cut(s)	433, 533
BsrI	ACTGG	3 cut(s)	439, 583, 620
BssAI	RCCGGY	2 cut(s)	433, 533
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	5 cut(s)	222, 405, 450, 519, 561
Bst4CI	ACNGT	3 cut(s)	187, 344, 356
BstC8I	GCNNGC	4 cut(s)	91, 142, 235, 535
BstDEI	CTNAG	1 cut(s)	194
BstDSI	CCRYGG	1 cut(s)	336
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstFNI	CGCG	6 cut(s)	93, 123, 128, 140, 233, 338
BstH2I	RGCGCY	2 cut(s)	206, 540
BstHHI	GCGC	6 cut(s)	95, 140, 205, 233, 317, 539
BstKTI	GATC	5 cut(s)	225, 408, 453, 522, 564
BstMAI	GTCTC	1 cut(s)	537
BstMBI	GATC	5 cut(s)	222, 405, 450, 519, 561
BstMWI	GCNNNNNNNGC	6 cut(s)	141, 144, 150, 211, 225, 234
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	2 cut(s)	486, 552
BstUI	CGCG	6 cut(s)	93, 123, 128, 140, 233, 338
BstV1I	GCAGC	2 cut(s)	12, 538
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BsuRI	GGCC	3 cut(s)	219, 351, 395
BtgI	CCRYGG	1 cut(s)	336
BtgZI	GCGATG	1 cut(s)	687
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	2 cut(s)	352, 561
Cac8I	GCNNGC	4 cut(s)	91, 142, 235, 535
CfoI	GCGC	6 cut(s)	95, 140, 205, 233, 317, 539
Cfr10I	RCCGGY	2 cut(s)	433, 533
Cfr13I	GGNCC	4 cut(s)	244, 349, 379, 436
Cfr42I	CCGCGG	1 cut(s)	339
CseI	GACGC	2 cut(s)	134, 691
CviAII	CATG	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	5 cut(s)	224, 407, 452, 521, 563
DpnII	GATC	5 cut(s)	222, 405, 450, 519, 561
EaeI	YGGCCR	1 cut(s)	217
Eco147I	AGGCCT	1 cut(s)	395
Eco47I	GGWCC	3 cut(s)	244, 379, 436
EcoNI	CCTNNNNNAGG	1 cut(s)	161
FaeI	CATG	1 cut(s)	265
FaiI	YATR	7 cut(s)	263, 293, 431, 488, 548, 621, 623
FaqI	GGGAC	1 cut(s)	609
FatI	CATG	1 cut(s)	261
FauI	CCCGC	1 cut(s)	128
FbaI	TGATCA	1 cut(s)	519
Fnu4HI	GCNGC	8 cut(s)	8, 23, 26, 108, 136, 145, 229, 552
Fsp4HI	GCNGC	8 cut(s)	8, 23, 26, 108, 136, 145, 229, 552
FspBI	CTAG	2 cut(s)	498, 666
GlaI	GCGC	6 cut(s)	94, 139, 204, 232, 316, 538
GluI	GCNGC	8 cut(s)	8, 23, 26, 108, 136, 145, 229, 552
GsuI	CTGGAG	1 cut(s)	561
HaeII	RGCGCY	2 cut(s)	206, 540
HaeIII	GGCC	3 cut(s)	219, 351, 395
HapII	CCGG	4 cut(s)	247, 279, 434, 534
HgaI	GACGC	2 cut(s)	134, 691
HhaI	GCGC	6 cut(s)	95, 140, 205, 233, 317, 539
Hin1II	CATG	1 cut(s)	265
Hin6I	GCGC	6 cut(s)	93, 138, 203, 231, 315, 537
HinP1I	GCGC	6 cut(s)	93, 138, 203, 231, 315, 537
HincII	GTYRAC	1 cut(s)	681
HindII	GTYRAC	1 cut(s)	681
HinfI	GANTC	3 cut(s)	640, 712, 752
HpaII	CCGG	4 cut(s)	247, 279, 434, 534
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	681
Hpy188I	TCNGA	4 cut(s)	115, 176, 321, 717
Hpy188III	TCNNGA	3 cut(s)	385, 415, 756
Hpy8I	GTNNAC	1 cut(s)	681
Hpy99I	CGWCG	3 cut(s)	128, 187, 307
HpyAV	CCTTC	2 cut(s)	157, 731
HpyCH4III	ACNGT	3 cut(s)	187, 344, 356
HpyCH4IV	ACGT	1 cut(s)	699
HpyCH4V	TGCA	2 cut(s)	273, 554
HpyF10VI	GCNNNNNNNGC	6 cut(s)	141, 144, 150, 211, 225, 234
HpyF3I	CTNAG	1 cut(s)	194
HpySE526I	ACGT	1 cut(s)	699
Hsp92II	CATG	1 cut(s)	265
HspAI	GCGC	6 cut(s)	93, 138, 203, 231, 315, 537
KroI	GCCGGC	1 cut(s)	533
KroNI	GCCGGC	1 cut(s)	535
Ksp22I	TGATCA	1 cut(s)	519
KspI	CCGCGG	1 cut(s)	339
Kzo9I	GATC	5 cut(s)	222, 405, 450, 519, 561
LmnI	GCTCC	3 cut(s)	33, 322, 709
Lsp1109I	GCAGC	2 cut(s)	12, 538
MaeI	CTAG	2 cut(s)	498, 666
MaeII	ACGT	1 cut(s)	699
MaeIII	GTNAC	2 cut(s)	356, 661
MalI	GATC	5 cut(s)	224, 407, 452, 521, 563
MboI	GATC	5 cut(s)	222, 405, 450, 519, 561
MboII	GAAGA	3 cut(s)	415, 571, 649
MflI	RGATCY	1 cut(s)	222
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	1 cut(s)	601
MluNI	TGGCCA	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	138
Mox20I	TGGCCA	1 cut(s)	219
MroNI	GCCGGC	1 cut(s)	533
MroXI	GAANNNNTTC	1 cut(s)	746
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	1 cut(s)	296
MslI	CAYNNNNRTG	1 cut(s)	624
Msp20I	TGGCCA	1 cut(s)	219
MspA1I	CMGCKG	2 cut(s)	25, 338
MspI	CCGG	4 cut(s)	247, 279, 434, 534
MspR9I	CCNGG	1 cut(s)	279
Mva1269I	GAATGC	1 cut(s)	273
MvnI	CGCG	6 cut(s)	93, 123, 128, 140, 233, 338
MwoI	GCNNNNNNNGC	6 cut(s)	141, 144, 150, 211, 225, 234
NaeI	GCCGGC	1 cut(s)	535
NciI	CCSGG	1 cut(s)	279
NdeII	GATC	5 cut(s)	222, 405, 450, 519, 561
NgoMIV	GCCGGC	1 cut(s)	533
NlaIII	CATG	1 cut(s)	265
NlaIV	GGNNCC	2 cut(s)	283, 350
NmuCI	GTSAC	1 cut(s)	661
NspI	RCATGY	1 cut(s)	265
PceI	AGGCCT	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	746
PfeI	GAWTC	2 cut(s)	640, 712
PfoI	TCCNGGA	1 cut(s)	277
PkrI	GCNGC	8 cut(s)	9, 24, 27, 109, 137, 146, 230, 553
Psp1406I	AACGTT	1 cut(s)	699
PspN4I	GGNNCC	2 cut(s)	283, 350
PspPI	GGNCC	4 cut(s)	244, 349, 379, 436
PstI	CTGCAG	1 cut(s)	556
PsuI	RGATCY	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	624
SacII	CCGCGG	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	8 cut(s)	8, 23, 26, 108, 136, 145, 229, 552
Sau3AI	GATC	5 cut(s)	222, 405, 450, 519, 561
Sau96I	GGNCC	4 cut(s)	244, 349, 379, 436
ScrFI	CCNGG	1 cut(s)	279
SetI	ASST	8 cut(s)	101, 159, 246, 287, 424, 553, 663, 702
SfcI	CTRYAG	2 cut(s)	486, 552
Sfr303I	CCGCGG	1 cut(s)	339
SgrBI	CCGCGG	1 cut(s)	339
SinI	GGWCC	3 cut(s)	244, 379, 436
SmiMI	CAYNNNNRTG	1 cut(s)	624
SpeI	ACTAGT	1 cut(s)	665
Sse9I	AATT	1 cut(s)	601
SseBI	AGGCCT	1 cut(s)	395
SspMI	CTAG	2 cut(s)	498, 666
StuI	AGGCCT	1 cut(s)	395
StyD4I	CCNGG	1 cut(s)	277
TaaI	ACNGT	3 cut(s)	187, 344, 356
TaiI	ACGT	1 cut(s)	702
TaqI	TCGA	2 cut(s)	210, 750
TasI	AATT	1 cut(s)	601
TauI	GCSGC	6 cut(s)	10, 25, 110, 138, 147, 231
TfiI	GAWTC	2 cut(s)	640, 712
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	2 cut(s)	359, 561
TseFI	GTSAC	1 cut(s)	661
TseI	GCWGC	2 cut(s)	25, 551
Tsp45I	GTSAC	1 cut(s)	661
TspDTI	ATGAA	1 cut(s)	176
TspGWI	ACGGA	2 cut(s)	502, 613
TspRI	CASTG	2 cut(s)	359, 561
VpaK11BI	GGWCC	3 cut(s)	244, 379, 436
XagI	CCTNNNNNAGG	1 cut(s)	161
XceI	RCATGY	1 cut(s)	265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	746
XspI	CTAG	2 cut(s)	498, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.