Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0010451

Physical Location & Seq

Genomic Coordinates Reverse (-)

34710710 .. 34716019

Gene Structure 5310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG289700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCGCCACCACCGACGCTAACGCCGGTGCTCCTCCTCCTCCTCCTCCTTTTCACACCACCCCTCCTCTCCCACTCGCCTTCTTCTTCTTCTTCTTCTGCGGTAACCTTCACCGACTCCCCCTCAATCTACGAATGGCAGTCCGCACGCGCCACCTACTACGCCGCCTCCGACCCTCGCGACGCGGTGGGCGGCGCGTGCGGCTACGGCGACCTGACGAAGGCCGGTTTCGGAATGGCGACGGTGGGGCTGAGCGAGGCGCTGTTCGAGCGTGGCCAGATCTGCGGCGCGTGCTTCGAGGTCCGCTGCGTGGAGGACATGCGGTGGTGCATTCCCGGAACCTCCATCATTTTGACGGCCACGAACTTCTGCGCTCCCAACTACGGCTTCACCGCCGAGGGTGGGGGCCACTGTAACCCTCCGAATAAGCACTTGGTCCTCCCGATTGAGGCCTTTGAGAAGATCGCTATCTGGAAAGCTGGTAATATGCCCGTCCAGTATCGCAGGATAAAGTGTAGAAAGGAAGGAGGAGTTCGTTTTACCATAGATGGGTCTAGTATCTTTATTTCAGTGCTGATCAGCAATGTTGCCGGCACTGGAGACATAACTGCAGTGAAGATTAAGGGTTCAAGAACTGGTTGGCTTCCAATGGGACGAAATTGGGGTCAAAACTGGCATATAAATGCTGATTTGAAGAATCAGCCGCTTTCTTTTGAGGTCACTAGCAGTGATGGGCAGACAGTTACATCTTACAATGTCGCTCCCAAGAATTGGAACTTCGGGCAGACTTTTGACGGGAAGCAGTTTGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

271

Amino Acids

29.3

Weight (kDa)

7.55

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	82 - 167	6.7e-17	Lytic transglycolase
Expansin_C	PF01357	178 - 255	8.2e-30	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03220
fragaria_vesca	FvH4_1g27660 FvH4_1g27740 FvH4_3g13760
malus_domestica	MD09G1279500.v1.1 MD17G1271500.v1.1
prunus_persica	Prupe.3G014800_v2.0.a1 Prupe.3G014800_v2.0.a1
pyrus_communis	pycom09g18760 pycom17g26980
rosa_chinensis	RchiOBHm_Chr3g0488771
rosa_laevigata	RLG00000022922
rosa_multiflora	Rmu_sc0001208.1_g000048 Rmu_sc0006246.1_g000010
rosa_roxburghii	Rroxscaffold_6G00393860
rosa_rugosa	Rorug03G0241600
rosa_samantha	Rh3AG289700 Rh3BG326800 Rh3CG324200 Rh3DG322700
rosa_wichuraiana	Rw3G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	771
AccII	CGCG	5 cut(s)	150, 180, 185, 197, 290
AcoI	YGGCCR	2 cut(s)	274, 357
AfiI	CCNNNNNNNGG	7 cut(s)	220, 310, 383, 402, 448, 549, 771
AgsI	TTSAA	2 cut(s)	630, 694
AjuI	GAANNNNNNNTTGG	4 cut(s)	371, 403, 416, 448
AluBI	AGCT	1 cut(s)	479
AluI	AGCT	1 cut(s)	479
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	594
AoxI	GGCC	5 cut(s)	222, 274, 357, 406, 450
ApeKI	GCWGC	1 cut(s)	306
ArsI	GACNNNNNNTTYG	2 cut(s)	649, 681
AspLEI	GCGC	5 cut(s)	152, 197, 262, 290, 374
AspS9I	GGNCC	3 cut(s)	301, 406, 436
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	2 cut(s)	103, 382
AvaII	GGWCC	2 cut(s)	301, 436
BalI	TGGCCA	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	293
BccI	CCATC	3 cut(s)	353, 542, 725
BceAI	ACGGC	3 cut(s)	223, 372, 400
BclI	TGATCA	1 cut(s)	576
BcnI	CCSGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	594
BfaI	CTAG	2 cut(s)	555, 723
BfmI	CTRYAG	1 cut(s)	609
BfoI	RGCGCY	1 cut(s)	263
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	6 cut(s)	165, 193, 202, 286, 307, 704
BlpI	GCTNAGC	1 cut(s)	251
BlsI	GCNGC	6 cut(s)	166, 194, 203, 287, 308, 705
Bme1390I	CCNGG	1 cut(s)	336
Bme18I	GGWCC	2 cut(s)	301, 436
BmgT120I	GGNCC	3 cut(s)	301, 406, 436
BmiI	GGNNCC	2 cut(s)	340, 407
BmrFI	CCNGG	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	618
Bpu1102I	GCTNAGC	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	336
BsaBI	GATNNNNATC	1 cut(s)	467
BsaJI	CCNNGG	1 cut(s)	396
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 152, 182
Bsc4I	CCNNNNNNNGG	7 cut(s)	220, 310, 383, 402, 448, 549, 771
Bse118I	RCCGGY	3 cut(s)	25, 224, 590
Bse1I	ACTGG	4 cut(s)	496, 601, 640, 677
Bse3DI	GCAATG	1 cut(s)	589
Bse8I	GATNNNNATC	1 cut(s)	467
BseDI	CCNNGG	1 cut(s)	396
BseJI	GATNNNNATC	1 cut(s)	467
BseLI	CCNNNNNNNGG	7 cut(s)	220, 310, 383, 402, 448, 549, 771
BseMI	GCAATG	1 cut(s)	589
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	4 cut(s)	496, 601, 640, 677
BseRI	GAGGAG	7 cut(s)	23, 26, 29, 32, 35, 56, 543
BseXI	GCAGC	1 cut(s)	293
Bsh1236I	CGCG	5 cut(s)	150, 180, 185, 197, 290
BshFI	GGCC	5 cut(s)	224, 276, 359, 408, 452
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	4 cut(s)	26, 225, 336, 591
BslFI	GGGAC	1 cut(s)	666
BslI	CCNNNNNNNGG	7 cut(s)	220, 310, 383, 402, 448, 549, 771
BsmAI	GTCTC	1 cut(s)	594
BsmFI	GGGAC	1 cut(s)	666
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	5 cut(s)	224, 276, 359, 408, 452
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	3 cut(s)	279, 462, 576
Bsp1720I	GCTNAGC	1 cut(s)	251
Bsp68I	TCGCGA	1 cut(s)	180
BspANI	GGCC	5 cut(s)	224, 276, 359, 408, 452
BspCNI	CTCAG	1 cut(s)	243
BspFNI	CGCG	5 cut(s)	150, 180, 185, 197, 290
BspLI	GGNNCC	2 cut(s)	340, 407
BspMAI	CTGCAG	1 cut(s)	613
BsrDI	GCAATG	1 cut(s)	589
BsrFI	RCCGGY	3 cut(s)	25, 224, 590
BsrI	ACTGG	4 cut(s)	496, 601, 640, 677
BssAI	RCCGGY	3 cut(s)	25, 224, 590
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	3 cut(s)	279, 462, 576
Bst4CI	ACNGT	3 cut(s)	244, 413, 742
BstC8I	GCNNGC	4 cut(s)	148, 199, 292, 592
BstDEI	CTNAG	1 cut(s)	251
BstEII	GGTNACC	1 cut(s)	103
BstENI	CCTNNNNNAGG	1 cut(s)	218
BstFNI	CGCG	5 cut(s)	150, 180, 185, 197, 290
BstH2I	RGCGCY	1 cut(s)	263
BstHHI	GCGC	5 cut(s)	152, 197, 262, 290, 374
BstKTI	GATC	3 cut(s)	282, 465, 579
BstMAI	GTCTC	1 cut(s)	594
BstMBI	GATC	3 cut(s)	279, 462, 576
BstMWI	GCNNNNNNNGC	6 cut(s)	198, 201, 207, 268, 282, 291
BstNSI	RCATGY	1 cut(s)	322
BstPI	GGTNACC	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	609
BstUI	CGCG	5 cut(s)	150, 180, 185, 197, 290
BstV1I	GCAGC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
BsuRI	GGCC	5 cut(s)	224, 276, 359, 408, 452
BtsI	GCAGTG	2 cut(s)	618, 733
BtsIMutI	CAGTG	5 cut(s)	409, 576, 594, 618, 733
BtuMI	TCGCGA	1 cut(s)	180
Cac8I	GCNNGC	4 cut(s)	148, 199, 292, 592
CfoI	GCGC	5 cut(s)	152, 197, 262, 290, 374
Cfr10I	RCCGGY	3 cut(s)	25, 224, 590
Cfr13I	GGNCC	3 cut(s)	301, 406, 436
CseI	GACGC	2 cut(s)	25, 191
CviAII	CATG	1 cut(s)	319
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	3 cut(s)	281, 464, 578
DpnII	GATC	3 cut(s)	279, 462, 576
EaeI	YGGCCR	2 cut(s)	274, 357
Eco147I	AGGCCT	1 cut(s)	452
Eco47I	GGWCC	2 cut(s)	301, 436
Eco91I	GGTNACC	1 cut(s)	103
EcoNI	CCTNNNNNAGG	1 cut(s)	218
EcoO65I	GGTNACC	1 cut(s)	103
FaeI	CATG	1 cut(s)	322
FaiI	YATR	6 cut(s)	320, 488, 545, 605, 678, 680
FaqI	GGGAC	1 cut(s)	666
FatI	CATG	1 cut(s)	318
FbaI	TGATCA	1 cut(s)	576
Fnu4HI	GCNGC	6 cut(s)	165, 193, 202, 286, 307, 704
Fsp4HI	GCNGC	6 cut(s)	165, 193, 202, 286, 307, 704
FspBI	CTAG	2 cut(s)	555, 723
GlaI	GCGC	5 cut(s)	151, 196, 261, 289, 373
GluI	GCNGC	6 cut(s)	165, 193, 202, 286, 307, 704
GsuI	CTGGAG	1 cut(s)	618
HaeII	RGCGCY	1 cut(s)	263
HaeIII	GGCC	5 cut(s)	224, 276, 359, 408, 452
HapII	CCGG	4 cut(s)	26, 225, 336, 591
HgaI	GACGC	2 cut(s)	25, 191
HhaI	GCGC	5 cut(s)	152, 197, 262, 290, 374
Hin1II	CATG	1 cut(s)	322
Hin6I	GCGC	5 cut(s)	150, 195, 260, 288, 372
HinP1I	GCGC	5 cut(s)	150, 195, 260, 288, 372
HinfI	GANTC	3 cut(s)	116, 697, 809
HpaII	CCGG	4 cut(s)	26, 225, 336, 591
HphI	GGTGA	2 cut(s)	103, 382
Hpy188I	TCNGA	3 cut(s)	172, 233, 423
Hpy188III	TCNNGA	5 cut(s)	179, 442, 472, 630, 813
Hpy99I	CGWCG	3 cut(s)	19, 185, 244
HpyAV	CCTTC	4 cut(s)	90, 118, 214, 518
HpyCH4III	ACNGT	3 cut(s)	244, 413, 742
HpyCH4V	TGCA	2 cut(s)	330, 611
HpyF10VI	GCNNNNNNNGC	6 cut(s)	198, 201, 207, 268, 282, 291
HpyF3I	CTNAG	1 cut(s)	251
Hsp92II	CATG	1 cut(s)	322
HspAI	GCGC	5 cut(s)	150, 195, 260, 288, 372
KroI	GCCGGC	1 cut(s)	590
KroNI	GCCGGC	1 cut(s)	592
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	3 cut(s)	279, 462, 576
LmnI	GCTCC	3 cut(s)	36, 379, 766
Lsp1109I	GCAGC	1 cut(s)	293
MaeI	CTAG	2 cut(s)	555, 723
MaeIII	GTNAC	4 cut(s)	103, 413, 718, 742
MalI	GATC	3 cut(s)	281, 464, 578
MboI	GATC	3 cut(s)	279, 462, 576
MboII	GAAGA	8 cut(s)	75, 78, 81, 84, 87, 472, 628, 706
MflI	RGATCY	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	33
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	2 cut(s)	658, 769
MluNI	TGGCCA	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	195
Mox20I	TGGCCA	1 cut(s)	276
MroNI	GCCGGC	1 cut(s)	590
MscI	TGGCCA	1 cut(s)	276
MseI	TTAA	1 cut(s)	621
MslI	CAYNNNNRTG	1 cut(s)	681
Msp20I	TGGCCA	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	306
MspI	CCGG	4 cut(s)	26, 225, 336, 591
MspR9I	CCNGG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	330
MvnI	CGCG	5 cut(s)	150, 180, 185, 197, 290
MwoI	GCNNNNNNNGC	6 cut(s)	198, 201, 207, 268, 282, 291
NaeI	GCCGGC	1 cut(s)	592
NciI	CCSGG	1 cut(s)	336
NdeII	GATC	3 cut(s)	279, 462, 576
NgoMIV	GCCGGC	1 cut(s)	590
NlaIII	CATG	1 cut(s)	322
NlaIV	GGNNCC	2 cut(s)	340, 407
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	718
NruI	TCGCGA	1 cut(s)	180
NspI	RCATGY	1 cut(s)	322
PceI	AGGCCT	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 168
PctI	GAATGC	1 cut(s)	330
PdiI	GCCGGC	1 cut(s)	592
PfeI	GAWTC	1 cut(s)	697
PflMI	CCANNNNNTGG	1 cut(s)	771
PfoI	TCCNGGA	1 cut(s)	334
PkrI	GCNGC	6 cut(s)	166, 194, 203, 287, 308, 705
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
PspEI	GGTNACC	1 cut(s)	103
PspN4I	GGNNCC	2 cut(s)	340, 407
PspPI	GGNCC	3 cut(s)	301, 406, 436
PstI	CTGCAG	1 cut(s)	613
PsuI	RGATCY	1 cut(s)	279
RruI	TCGCGA	1 cut(s)	180
RseI	CAYNNNNRTG	1 cut(s)	681
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	6 cut(s)	165, 193, 202, 286, 307, 704
Sau3AI	GATC	3 cut(s)	279, 462, 576
Sau96I	GGNCC	3 cut(s)	301, 406, 436
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	336
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	7 cut(s)	110, 158, 216, 303, 344, 481, 720
SfcI	CTRYAG	1 cut(s)	609
SgrAI	CRCCGGYG	1 cut(s)	25
SinI	GGWCC	2 cut(s)	301, 436
SmiMI	CAYNNNNRTG	1 cut(s)	681
Sse9I	AATT	2 cut(s)	658, 769
SseBI	AGGCCT	1 cut(s)	452
SspMI	CTAG	2 cut(s)	555, 723
StuI	AGGCCT	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	3 cut(s)	244, 413, 742
TaqI	TCGA	2 cut(s)	267, 297
TasI	AATT	2 cut(s)	658, 769
TauI	GCSGC	5 cut(s)	167, 195, 204, 288, 706
TfiI	GAWTC	1 cut(s)	697
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	5 cut(s)	416, 576, 601, 618, 733
TseFI	GTSAC	1 cut(s)	718
TseI	GCWGC	1 cut(s)	306
Tsp45I	GTSAC	1 cut(s)	718
TspRI	CASTG	5 cut(s)	416, 576, 601, 618, 733
Van91I	CCANNNNNTGG	1 cut(s)	771
VpaK11BI	GGWCC	2 cut(s)	301, 436
XagI	CCTNNNNNAGG	1 cut(s)	218
XceI	RCATGY	1 cut(s)	322
XspI	CTAG	2 cut(s)	555, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.