Rh3BG326800

expansin-A13-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0010451
Physical Location & Seq
Reverse (-)
34027289 .. 34032874
5586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG326800.1

Sequence Viewer

Length: 813 bp
ATGTCGCCACCACCGACGCTAACGCCGGTGCTCCTCCTCCTCCTCCTATTCACACCACCCCTCCTCTCCCACTCGCCTTCTTCTTCTTCTTCTTCTGCGATAACCTTCACCGACTCCCCCTCAATCTACGAATGGCAGTCCGCTCGCGCCACCTACTACGCCGCCTCCGACCCTCGCGACGCGGTGGGCGGCGCGTGCGGCTACGGCGACCTGACGAAGGCCGGTTTCGGAATGGCGACGGTGGGGCTGAGCGAGGCGCTGTTCGAGCGTGGCCAGATCTGCGGCGCGTGCTTCGAGGTCCGCTGCGTCGAGGACATGCGGTGGTGCATTCCCGGAACCTCCATCATTTTGACGGCCACGAACTTCTGCGCTCCCAACTATGGCTTCACCGCCGAGGGTGGGGGCCACTGTAACCCTCCGAATAAGCACTTGGTCCTCCCGATTGAGGCCTTTGAGAAGATCGCCATCTGGAAAGCTGGTAATATGCCCGTCCAGTATCGCAGGATAAAGTGTAGAAAGGAAGGAGGAGTTCGTTTTACCATAGATGGGTCTAGTATCTTTATTTCAGTGCTGATCAGCAATGTTGCCGGCACTGGAGACATAACTGCAGTGAAGATCAAGGGTTCAAGAACTGGTTGGCTTCCAATGGGACGAAATTGGGGTCAAAACTGGCATATAAATGCTGATTTGAAGAATCAGCCTCTTTCTTTTGAGGTCACTAGCAGCAATGGGCAGACAGTTACATCTTACAATGTCGCTCCCAAGAATTGGAACTTCGGGCAGACTTTTGATGGGAAGCAGTTTGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

270

Amino Acids

29.2

Weight (kDa)

8.1

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 81 - 166 6.6e-17 Lytic transglycolase
Expansin_C PF01357 177 - 254 1.7e-29 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 768
AccBSI CCGCTC 1 cut(s) 143
AccII CGCG 5 cut(s) 147, 177, 182, 194, 287
AciI CCGC 9 cut(s) 141, 162, 182, 189, 198, 282, 301, 319, 390
AcoI YGGCCR 2 cut(s) 271, 354
AfiI CCNNNNNNNGG 6 cut(s) 217, 380, 399, 445, 546, 768
AgsI TTSAA 2 cut(s) 627, 691
AjuI GAANNNNNNNTTGG 4 cut(s) 368, 400, 413, 445
AluBI AGCT 1 cut(s) 476
AluI AGCT 1 cut(s) 476
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 591
AoxI GGCC 5 cut(s) 219, 271, 354, 403, 447
ApeKI GCWGC 2 cut(s) 303, 723
ArsI GACNNNNNNTTYG 2 cut(s) 646, 678
AspLEI GCGC 5 cut(s) 149, 194, 259, 287, 371
AspS9I GGNCC 3 cut(s) 298, 403, 433
AsuC2I CCSGG 1 cut(s) 333
AsuHPI GGTGA 2 cut(s) 100, 379
AvaII GGWCC 2 cut(s) 298, 433
BalI TGGCCA 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 290, 735
BccI CCATC 4 cut(s) 350, 473, 539, 785
BceAI ACGGC 2 cut(s) 220, 369
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BclI TGATCA 1 cut(s) 573
BcnI CCSGG 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 591
BfaI CTAG 2 cut(s) 552, 720
BfmI CTRYAG 1 cut(s) 606
BfoI RGCGCY 1 cut(s) 260
BglII AGATCT 1 cut(s) 276
BisI GCNGC 6 cut(s) 162, 190, 199, 283, 304, 724
BlpI GCTNAGC 1 cut(s) 248
BlsI GCNGC 6 cut(s) 163, 191, 200, 284, 305, 725
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 2 cut(s) 298, 433
BmgT120I GGNCC 3 cut(s) 298, 403, 433
BmiI GGNNCC 2 cut(s) 337, 404
BmrFI CCNGG 1 cut(s) 333
BpmI CTGGAG 1 cut(s) 615
Bpu1102I GCTNAGC 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 333
BsaBI GATNNNNATC 1 cut(s) 464
BsaJI CCNNGG 1 cut(s) 393
BsaXI ACNNNNNCTCC 4 cut(s) 45, 75, 149, 179
Bsc4I CCNNNNNNNGG 6 cut(s) 217, 380, 399, 445, 546, 768
Bse118I RCCGGY 3 cut(s) 25, 221, 587
Bse1I ACTGG 4 cut(s) 493, 598, 637, 674
Bse3DI GCAATG 2 cut(s) 586, 733
Bse8I GATNNNNATC 1 cut(s) 464
BseDI CCNNGG 1 cut(s) 393
BseJI GATNNNNATC 1 cut(s) 464
BseLI CCNNNNNNNGG 6 cut(s) 217, 380, 399, 445, 546, 768
BseMI GCAATG 2 cut(s) 586, 733
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 4 cut(s) 493, 598, 637, 674
BseRI GAGGAG 6 cut(s) 23, 26, 29, 32, 53, 540
BseXI GCAGC 2 cut(s) 290, 735
Bsh1236I CGCG 5 cut(s) 147, 177, 182, 194, 287
BshFI GGCC 5 cut(s) 221, 273, 356, 405, 449
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 4 cut(s) 26, 222, 333, 588
BslFI GGGAC 1 cut(s) 663
BslI CCNNNNNNNGG 6 cut(s) 217, 380, 399, 445, 546, 768
BsmAI GTCTC 1 cut(s) 591
BsmFI GGGAC 1 cut(s) 663
BsmI GAATGC 1 cut(s) 327
BsnI GGCC 5 cut(s) 221, 273, 356, 405, 449
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 4 cut(s) 276, 459, 573, 615
Bsp1720I GCTNAGC 1 cut(s) 248
Bsp68I TCGCGA 1 cut(s) 177
BspACI CCGC 9 cut(s) 141, 162, 182, 189, 198, 282, 301, 319, 390
BspANI GGCC 5 cut(s) 221, 273, 356, 405, 449
BspCNI CTCAG 1 cut(s) 240
BspFNI CGCG 5 cut(s) 147, 177, 182, 194, 287
BspLI GGNNCC 2 cut(s) 337, 404
BspMAI CTGCAG 1 cut(s) 610
BsrBI CCGCTC 1 cut(s) 143
BsrDI GCAATG 2 cut(s) 586, 733
BsrFI RCCGGY 3 cut(s) 25, 221, 587
BsrI ACTGG 4 cut(s) 493, 598, 637, 674
BssAI RCCGGY 3 cut(s) 25, 221, 587
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 4 cut(s) 276, 459, 573, 615
Bst4CI ACNGT 3 cut(s) 241, 410, 739
BstC8I GCNNGC 4 cut(s) 145, 196, 289, 589
BstDEI CTNAG 1 cut(s) 248
BstENI CCTNNNNNAGG 1 cut(s) 215
BstFNI CGCG 5 cut(s) 147, 177, 182, 194, 287
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 5 cut(s) 149, 194, 259, 287, 371
BstKTI GATC 4 cut(s) 279, 462, 576, 618
BstMAI GTCTC 1 cut(s) 591
BstMBI GATC 4 cut(s) 276, 459, 573, 615
BstMWI GCNNNNNNNGC 6 cut(s) 195, 198, 204, 265, 279, 288
BstNSI RCATGY 1 cut(s) 319
BstSCI CCNGG 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 606
BstUI CGCG 5 cut(s) 147, 177, 182, 194, 287
BstV1I GCAGC 2 cut(s) 290, 735
BstX2I RGATCY 1 cut(s) 276
BstYI RGATCY 1 cut(s) 276
BsuRI GGCC 5 cut(s) 221, 273, 356, 405, 449
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 4 cut(s) 406, 573, 591, 615
BtuMI TCGCGA 1 cut(s) 177
Cac8I GCNNGC 4 cut(s) 145, 196, 289, 589
CfoI GCGC 5 cut(s) 149, 194, 259, 287, 371
Cfr10I RCCGGY 3 cut(s) 25, 221, 587
Cfr13I GGNCC 3 cut(s) 298, 403, 433
CseI GACGC 3 cut(s) 25, 188, 295
CviAII CATG 1 cut(s) 316
DdeI CTNAG 1 cut(s) 248
DpnI GATC 4 cut(s) 278, 461, 575, 617
DpnII GATC 4 cut(s) 276, 459, 573, 615
EaeI YGGCCR 2 cut(s) 271, 354
Eco147I AGGCCT 1 cut(s) 449
Eco47I GGWCC 2 cut(s) 298, 433
EcoNI CCTNNNNNAGG 1 cut(s) 215
FaeI CATG 1 cut(s) 319
FaiI YATR 7 cut(s) 317, 381, 485, 542, 602, 675, 677
FaqI GGGAC 1 cut(s) 663
FatI CATG 1 cut(s) 315
FbaI TGATCA 1 cut(s) 573
Fnu4HI GCNGC 6 cut(s) 162, 190, 199, 283, 304, 724
Fsp4HI GCNGC 6 cut(s) 162, 190, 199, 283, 304, 724
FspBI CTAG 2 cut(s) 552, 720
GlaI GCGC 5 cut(s) 148, 193, 258, 286, 370
GluI GCNGC 6 cut(s) 162, 190, 199, 283, 304, 724
GsuI CTGGAG 1 cut(s) 615
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 5 cut(s) 221, 273, 356, 405, 449
HapII CCGG 4 cut(s) 26, 222, 333, 588
HgaI GACGC 3 cut(s) 25, 188, 295
HhaI GCGC 5 cut(s) 149, 194, 259, 287, 371
Hin1II CATG 1 cut(s) 319
Hin6I GCGC 5 cut(s) 147, 192, 257, 285, 369
HinP1I GCGC 5 cut(s) 147, 192, 257, 285, 369
HinfI GANTC 3 cut(s) 113, 694, 806
HpaII CCGG 4 cut(s) 26, 222, 333, 588
HphI GGTGA 2 cut(s) 100, 379
Hpy188I TCNGA 3 cut(s) 169, 230, 420
Hpy188III TCNNGA 5 cut(s) 176, 439, 469, 627, 810
Hpy99I CGWCG 4 cut(s) 19, 182, 241, 311
HpyAV CCTTC 4 cut(s) 87, 115, 211, 515
HpyCH4III ACNGT 3 cut(s) 241, 410, 739
HpyCH4V TGCA 2 cut(s) 327, 608
HpyF10VI GCNNNNNNNGC 6 cut(s) 195, 198, 204, 265, 279, 288
HpyF3I CTNAG 1 cut(s) 248
Hsp92II CATG 1 cut(s) 319
HspAI GCGC 5 cut(s) 147, 192, 257, 285, 369
KroI GCCGGC 1 cut(s) 587
KroNI GCCGGC 1 cut(s) 589
Ksp22I TGATCA 1 cut(s) 573
Kzo9I GATC 4 cut(s) 276, 459, 573, 615
LmnI GCTCC 3 cut(s) 36, 376, 763
Lsp1109I GCAGC 2 cut(s) 290, 735
MaeI CTAG 2 cut(s) 552, 720
MaeIII GTNAC 3 cut(s) 410, 715, 739
MalI GATC 4 cut(s) 278, 461, 575, 617
MbiI CCGCTC 1 cut(s) 143
MboI GATC 4 cut(s) 276, 459, 573, 615
MboII GAAGA 8 cut(s) 72, 75, 78, 81, 84, 469, 625, 703
MflI RGATCY 1 cut(s) 276
MhlI GDGCHC 1 cut(s) 33
MlsI TGGCCA 1 cut(s) 273
MluCI AATT 2 cut(s) 655, 766
MluNI TGGCCA 1 cut(s) 273
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 192
Mox20I TGGCCA 1 cut(s) 273
MroNI GCCGGC 1 cut(s) 587
MscI TGGCCA 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 678
Msp20I TGGCCA 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 303
MspI CCGG 4 cut(s) 26, 222, 333, 588
MspR9I CCNGG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 327
MvnI CGCG 5 cut(s) 147, 177, 182, 194, 287
MwoI GCNNNNNNNGC 6 cut(s) 195, 198, 204, 265, 279, 288
NaeI GCCGGC 1 cut(s) 589
NciI CCSGG 1 cut(s) 333
NdeII GATC 4 cut(s) 276, 459, 573, 615
NgoMIV GCCGGC 1 cut(s) 587
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 2 cut(s) 337, 404
NmeAIII GCCGAG 1 cut(s) 418
NmuCI GTSAC 1 cut(s) 715
NruI TCGCGA 1 cut(s) 177
NspI RCATGY 1 cut(s) 319
PceI AGGCCT 1 cut(s) 449
PcsI WCGNNNNNNNCGW 2 cut(s) 11, 165
PctI GAATGC 1 cut(s) 327
PdiI GCCGGC 1 cut(s) 589
PfeI GAWTC 1 cut(s) 694
PflMI CCANNNNNTGG 1 cut(s) 768
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 6 cut(s) 163, 191, 200, 284, 305, 725
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 337, 404
PspPI GGNCC 3 cut(s) 298, 403, 433
PstI CTGCAG 1 cut(s) 610
PsuI RGATCY 1 cut(s) 276
RruI TCGCGA 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 678
SatI GCNGC 6 cut(s) 162, 190, 199, 283, 304, 724
Sau3AI GATC 4 cut(s) 276, 459, 573, 615
Sau96I GGNCC 3 cut(s) 298, 403, 433
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 33
SetI ASST 7 cut(s) 107, 155, 213, 300, 341, 478, 717
SfcI CTRYAG 1 cut(s) 606
SgrAI CRCCGGYG 1 cut(s) 25
SinI GGWCC 2 cut(s) 298, 433
SmiMI CAYNNNNRTG 1 cut(s) 678
Sse9I AATT 2 cut(s) 655, 766
SseBI AGGCCT 1 cut(s) 449
SsiI CCGC 9 cut(s) 141, 162, 182, 189, 198, 282, 301, 319, 390
SspMI CTAG 2 cut(s) 552, 720
StuI AGGCCT 1 cut(s) 449
StyD4I CCNGG 1 cut(s) 331
TaaI ACNGT 3 cut(s) 241, 410, 739
TaqI TCGA 3 cut(s) 264, 294, 309
TasI AATT 2 cut(s) 655, 766
TauI GCSGC 4 cut(s) 164, 192, 201, 285
TfiI GAWTC 1 cut(s) 694
TscAI CASTG 4 cut(s) 413, 573, 598, 615
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 2 cut(s) 303, 723
Tsp45I GTSAC 1 cut(s) 715
TspRI CASTG 4 cut(s) 413, 573, 598, 615
Van91I CCANNNNNTGG 1 cut(s) 768
VpaK11BI GGWCC 2 cut(s) 298, 433
XagI CCTNNNNNAGG 1 cut(s) 215
XceI RCATGY 1 cut(s) 319
XspI CTAG 2 cut(s) 552, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.