Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010451

Physical Location & Seq

Genomic Coordinates Reverse (-)

35115909 .. 35121360

Gene Structure 5452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG322700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTCGCCACCACCGACGCTAACGCCGGTGCTTCTCCTCCTCCTCCTCCTATTCACACCACCCCTCCTCTCCCACTCGCCTTCTTCTTCTTCTGCGATAACCTTCACCGACTCCCCTTCAATCTACGAATGGCAGTCCGCACGCGCCACCTACTACGCCGCCTCCGACCCTCGCGACGCGGTGGGCGGCGCGTGCGGCTACGGCGACCTGACGAAGGCCGGTTTCGGAATGGCGACGGTGGGGCTGAGCGAGGCGCTGTTCGAGCGTGGCCAGATCTGCGGCGCGTGCTTCGAGGTCCGCTGCGTGGAGGACATGCGGTGGTGCATTCCCGGAACCTCCATCATTTTGACGGCCACGAACTTCTGCGCTCCCAACTATGGCTTCACCGCCGAGGGTGGGGGCCACTGTAACCCTCCGAATAAGCACTTGGTCCTCCCGATTGAGGCCTTTGAGAAGATCGCTATCTGGAAAGCTGGTAATATGCCCGTCCAGTATCGCAGGATAAAGTGTAGAAAGGAAGGAGGAGTTCGTTTTACCATAGATGGGTCTAGTATCTTTATTTCAGTGCTGATCAGCAATGTTGCCGGCACTGGAGACATAACTGCAGTGAAGATCAAGGGTTCAAGAACTGGTTGGCTTCCAATGGGACGAAATTGGGGTCAAAACTGGCATATAAATGCTGATTTGAAGAATCAGCCGCTTTCTTTTGAGGTCACTAGCAGCGATGGGCAGACAGTTACATCTTACAATGTCGCTCCCAAGAATTGGAACTTCGGGCAGACTTTTGACGGGAAGCAGTTTGAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

269

Amino Acids

29.14

Weight (kDa)

7.55

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	80 - 165	6.6e-17	Lytic transglycolase
Expansin_C	PF01357	176 - 253	8.1e-30	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03220
fragaria_vesca	FvH4_1g27660 FvH4_1g27740 FvH4_3g13760
malus_domestica	MD09G1279500.v1.1 MD17G1271500.v1.1
prunus_persica	Prupe.3G014800_v2.0.a1 Prupe.3G014800_v2.0.a1
pyrus_communis	pycom09g18760 pycom17g26980
rosa_chinensis	RchiOBHm_Chr3g0488771
rosa_laevigata	RLG00000022922
rosa_multiflora	Rmu_sc0001208.1_g000048 Rmu_sc0006246.1_g000010
rosa_roxburghii	Rroxscaffold_6G00393860
rosa_rugosa	Rorug03G0241600
rosa_samantha	Rh3AG289700 Rh3BG326800 Rh3CG324200 Rh3DG322700
rosa_wichuraiana	Rw3G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	765
AccII	CGCG	5 cut(s)	144, 174, 179, 191, 284
AcoI	YGGCCR	2 cut(s)	268, 351
AfiI	CCNNNNNNNGG	7 cut(s)	214, 304, 377, 396, 442, 543, 765
AgsI	TTSAA	3 cut(s)	120, 624, 688
AjuI	GAANNNNNNNTTGG	4 cut(s)	365, 397, 410, 442
AluBI	AGCT	1 cut(s)	473
AluI	AGCT	1 cut(s)	473
Alw26I	GTCTC	1 cut(s)	588
AoxI	GGCC	5 cut(s)	216, 268, 351, 400, 444
ApeKI	GCWGC	2 cut(s)	300, 720
ArsI	GACNNNNNNTTYG	2 cut(s)	643, 675
AspLEI	GCGC	5 cut(s)	146, 191, 256, 284, 368
AspS9I	GGNCC	3 cut(s)	295, 400, 430
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	97, 376
AvaII	GGWCC	2 cut(s)	295, 430
BalI	TGGCCA	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	287, 732
BccI	CCATC	3 cut(s)	347, 536, 719
BceAI	ACGGC	2 cut(s)	217, 366
BclI	TGATCA	1 cut(s)	570
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	588
BfaI	CTAG	2 cut(s)	549, 717
BfmI	CTRYAG	1 cut(s)	603
BfoI	RGCGCY	1 cut(s)	257
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	7 cut(s)	159, 187, 196, 280, 301, 698, 721
BlpI	GCTNAGC	1 cut(s)	245
BlsI	GCNGC	7 cut(s)	160, 188, 197, 281, 302, 699, 722
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	2 cut(s)	295, 430
BmgT120I	GGNCC	3 cut(s)	295, 400, 430
BmiI	GGNNCC	2 cut(s)	334, 401
BmrFI	CCNGG	1 cut(s)	330
BpmI	CTGGAG	1 cut(s)	612
Bpu1102I	GCTNAGC	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	330
BsaBI	GATNNNNATC	1 cut(s)	461
BsaJI	CCNNGG	1 cut(s)	390
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 146, 176
Bsc4I	CCNNNNNNNGG	7 cut(s)	214, 304, 377, 396, 442, 543, 765
Bse118I	RCCGGY	3 cut(s)	25, 218, 584
Bse1I	ACTGG	4 cut(s)	490, 595, 634, 671
Bse3DI	GCAATG	1 cut(s)	583
Bse8I	GATNNNNATC	1 cut(s)	461
BseDI	CCNNGG	1 cut(s)	390
BseJI	GATNNNNATC	1 cut(s)	461
BseLI	CCNNNNNNNGG	7 cut(s)	214, 304, 377, 396, 442, 543, 765
BseMI	GCAATG	1 cut(s)	583
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	4 cut(s)	490, 595, 634, 671
BseRI	GAGGAG	6 cut(s)	26, 29, 32, 35, 56, 537
BseXI	GCAGC	2 cut(s)	287, 732
Bsh1236I	CGCG	5 cut(s)	144, 174, 179, 191, 284
BshFI	GGCC	5 cut(s)	218, 270, 353, 402, 446
BsiSI	CCGG	4 cut(s)	26, 219, 330, 585
BslFI	GGGAC	1 cut(s)	660
BslI	CCNNNNNNNGG	7 cut(s)	214, 304, 377, 396, 442, 543, 765
BsmAI	GTCTC	1 cut(s)	588
BsmFI	GGGAC	1 cut(s)	660
BsmI	GAATGC	1 cut(s)	324
BsnI	GGCC	5 cut(s)	218, 270, 353, 402, 446
Bsp143I	GATC	4 cut(s)	273, 456, 570, 612
Bsp1720I	GCTNAGC	1 cut(s)	245
Bsp68I	TCGCGA	1 cut(s)	174
BspANI	GGCC	5 cut(s)	218, 270, 353, 402, 446
BspCNI	CTCAG	1 cut(s)	237
BspFNI	CGCG	5 cut(s)	144, 174, 179, 191, 284
BspLI	GGNNCC	2 cut(s)	334, 401
BspMAI	CTGCAG	1 cut(s)	607
BsrDI	GCAATG	1 cut(s)	583
BsrFI	RCCGGY	3 cut(s)	25, 218, 584
BsrI	ACTGG	4 cut(s)	490, 595, 634, 671
BssAI	RCCGGY	3 cut(s)	25, 218, 584
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	4 cut(s)	273, 456, 570, 612
Bst4CI	ACNGT	3 cut(s)	238, 407, 736
BstC8I	GCNNGC	4 cut(s)	142, 193, 286, 586
BstDEI	CTNAG	1 cut(s)	245
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstFNI	CGCG	5 cut(s)	144, 174, 179, 191, 284
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	5 cut(s)	146, 191, 256, 284, 368
BstKTI	GATC	4 cut(s)	276, 459, 573, 615
BstMAI	GTCTC	1 cut(s)	588
BstMBI	GATC	4 cut(s)	273, 456, 570, 612
BstMWI	GCNNNNNNNGC	6 cut(s)	192, 195, 201, 262, 276, 285
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	603
BstUI	CGCG	5 cut(s)	144, 174, 179, 191, 284
BstV1I	GCAGC	2 cut(s)	287, 732
BstX2I	RGATCY	1 cut(s)	273
BstYI	RGATCY	1 cut(s)	273
BsuRI	GGCC	5 cut(s)	218, 270, 353, 402, 446
BtgZI	GCGATG	1 cut(s)	738
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	4 cut(s)	403, 570, 588, 612
BtuMI	TCGCGA	1 cut(s)	174
Cac8I	GCNNGC	4 cut(s)	142, 193, 286, 586
CfoI	GCGC	5 cut(s)	146, 191, 256, 284, 368
Cfr10I	RCCGGY	3 cut(s)	25, 218, 584
Cfr13I	GGNCC	3 cut(s)	295, 400, 430
CseI	GACGC	2 cut(s)	25, 185
CviAII	CATG	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	245
DpnI	GATC	4 cut(s)	275, 458, 572, 614
DpnII	GATC	4 cut(s)	273, 456, 570, 612
EaeI	YGGCCR	2 cut(s)	268, 351
Eco147I	AGGCCT	1 cut(s)	446
Eco47I	GGWCC	2 cut(s)	295, 430
EcoNI	CCTNNNNNAGG	1 cut(s)	212
FaeI	CATG	1 cut(s)	316
FaiI	YATR	7 cut(s)	314, 378, 482, 539, 599, 672, 674
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	1 cut(s)	312
FbaI	TGATCA	1 cut(s)	570
Fnu4HI	GCNGC	7 cut(s)	159, 187, 196, 280, 301, 698, 721
Fsp4HI	GCNGC	7 cut(s)	159, 187, 196, 280, 301, 698, 721
FspBI	CTAG	2 cut(s)	549, 717
GlaI	GCGC	5 cut(s)	145, 190, 255, 283, 367
GluI	GCNGC	7 cut(s)	159, 187, 196, 280, 301, 698, 721
GsuI	CTGGAG	1 cut(s)	612
HaeII	RGCGCY	1 cut(s)	257
HaeIII	GGCC	5 cut(s)	218, 270, 353, 402, 446
HapII	CCGG	4 cut(s)	26, 219, 330, 585
HgaI	GACGC	2 cut(s)	25, 185
HhaI	GCGC	5 cut(s)	146, 191, 256, 284, 368
Hin1II	CATG	1 cut(s)	316
Hin6I	GCGC	5 cut(s)	144, 189, 254, 282, 366
HinP1I	GCGC	5 cut(s)	144, 189, 254, 282, 366
HinfI	GANTC	3 cut(s)	110, 691, 803
HpaII	CCGG	4 cut(s)	26, 219, 330, 585
HphI	GGTGA	2 cut(s)	97, 376
Hpy188I	TCNGA	3 cut(s)	166, 227, 417
Hpy188III	TCNNGA	5 cut(s)	173, 436, 466, 624, 807
Hpy99I	CGWCG	3 cut(s)	19, 179, 238
HpyAV	CCTTC	5 cut(s)	90, 112, 126, 208, 512
HpyCH4III	ACNGT	3 cut(s)	238, 407, 736
HpyCH4V	TGCA	2 cut(s)	324, 605
HpyF10VI	GCNNNNNNNGC	6 cut(s)	192, 195, 201, 262, 276, 285
HpyF3I	CTNAG	1 cut(s)	245
Hsp92II	CATG	1 cut(s)	316
HspAI	GCGC	5 cut(s)	144, 189, 254, 282, 366
KroI	GCCGGC	1 cut(s)	584
KroNI	GCCGGC	1 cut(s)	586
Ksp22I	TGATCA	1 cut(s)	570
Kzo9I	GATC	4 cut(s)	273, 456, 570, 612
LmnI	GCTCC	2 cut(s)	373, 760
Lsp1109I	GCAGC	2 cut(s)	287, 732
MaeI	CTAG	2 cut(s)	549, 717
MaeIII	GTNAC	3 cut(s)	407, 712, 736
MalI	GATC	4 cut(s)	275, 458, 572, 614
MboI	GATC	4 cut(s)	273, 456, 570, 612
MboII	GAAGA	6 cut(s)	75, 78, 81, 466, 622, 700
MflI	RGATCY	1 cut(s)	273
MlsI	TGGCCA	1 cut(s)	270
MluCI	AATT	2 cut(s)	652, 763
MluNI	TGGCCA	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	189
Mox20I	TGGCCA	1 cut(s)	270
MroNI	GCCGGC	1 cut(s)	584
MscI	TGGCCA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	675
Msp20I	TGGCCA	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	300
MspI	CCGG	4 cut(s)	26, 219, 330, 585
MspR9I	CCNGG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	324
MvnI	CGCG	5 cut(s)	144, 174, 179, 191, 284
MwoI	GCNNNNNNNGC	6 cut(s)	192, 195, 201, 262, 276, 285
NaeI	GCCGGC	1 cut(s)	586
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	4 cut(s)	273, 456, 570, 612
NgoMIV	GCCGGC	1 cut(s)	584
NlaIII	CATG	1 cut(s)	316
NlaIV	GGNNCC	2 cut(s)	334, 401
NmeAIII	GCCGAG	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	712
NruI	TCGCGA	1 cut(s)	174
NspI	RCATGY	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 162
PctI	GAATGC	1 cut(s)	324
PdiI	GCCGGC	1 cut(s)	586
PfeI	GAWTC	1 cut(s)	691
PflMI	CCANNNNNTGG	1 cut(s)	765
PfoI	TCCNGGA	1 cut(s)	328
PkrI	GCNGC	7 cut(s)	160, 188, 197, 281, 302, 699, 722
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	334, 401
PspPI	GGNCC	3 cut(s)	295, 400, 430
PstI	CTGCAG	1 cut(s)	607
PsuI	RGATCY	1 cut(s)	273
RruI	TCGCGA	1 cut(s)	174
RseI	CAYNNNNRTG	1 cut(s)	675
SatI	GCNGC	7 cut(s)	159, 187, 196, 280, 301, 698, 721
Sau3AI	GATC	4 cut(s)	273, 456, 570, 612
Sau96I	GGNCC	3 cut(s)	295, 400, 430
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	330
SetI	ASST	7 cut(s)	104, 152, 210, 297, 338, 475, 714
SfcI	CTRYAG	1 cut(s)	603
SgrAI	CRCCGGYG	1 cut(s)	25
SinI	GGWCC	2 cut(s)	295, 430
SmiMI	CAYNNNNRTG	1 cut(s)	675
Sse9I	AATT	2 cut(s)	652, 763
SseBI	AGGCCT	1 cut(s)	446
SspMI	CTAG	2 cut(s)	549, 717
StuI	AGGCCT	1 cut(s)	446
StyD4I	CCNGG	1 cut(s)	328
TaaI	ACNGT	3 cut(s)	238, 407, 736
TaqI	TCGA	2 cut(s)	261, 291
TasI	AATT	2 cut(s)	652, 763
TauI	GCSGC	5 cut(s)	161, 189, 198, 282, 700
TfiI	GAWTC	1 cut(s)	691
TscAI	CASTG	4 cut(s)	410, 570, 595, 612
TseFI	GTSAC	1 cut(s)	712
TseI	GCWGC	2 cut(s)	300, 720
Tsp45I	GTSAC	1 cut(s)	712
TspRI	CASTG	4 cut(s)	410, 570, 595, 612
Van91I	CCANNNNNTGG	1 cut(s)	765
VpaK11BI	GGWCC	2 cut(s)	295, 430
XagI	CCTNNNNNAGG	1 cut(s)	212
XceI	RCATGY	1 cut(s)	316
XspI	CTAG	2 cut(s)	549, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.