Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006246.1

Orthogroup ID

OG0010451

Physical Location & Seq

Genomic Coordinates Reverse (-)

47848 .. 52576

Gene Structure 4729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006246.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgtcgccaccaccgacgctaacgccggtgctcctcctcctcctcctcctcctattcacaccacccctcctctcccactcgccttcttcttcttcttcttcttcttctgcgataaccttcaccgactccccctcaatctacgaatggcagtccgcacgcgccacctactacgcggcctccgaccctcgcgacgcggtgggcggcgcgtgcggctacggcgacctgacgaaggccggtttcggaatggcgacggtggggctgagcgaggcgctgttcgagcgtggccagatctgcggcgcgtgcttcgaggtccgctgcgtggaggacatgcggtggtgcattcccggaacctccatcattttgacggccacgaacttctgcgctcccaactatggcttcaccgccgagggtgggggccactgtaaccctccgaataagcacttggtcctcccgattgaggcctttgagaagatcgctatctggaaagctggtaatatgcccgtccagtatcgcaggataaagtgtagaaaggaaggaggagttcgttttaccatagatgggtctagtatctttatttcagtgctgatcagcaatgttgccggcactggagacataactgcagtgaagatcaagggttcaagaactggttggcttccaatgggacgaaattggggtcaaaactggcatataaatgctgatttgaagaatcagccgctttcttttgaggtcactagcagcgatgggcagacagttacatcttacaatgtcgctcccaagaattggaacttcgggcagacttttgacgggaagcagtttgagtcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

274

Amino Acids

29.6

Weight (kDa)

7.55

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03220
fragaria_vesca	FvH4_1g27660 FvH4_1g27740 FvH4_3g13760
malus_domestica	MD09G1279500.v1.1 MD17G1271500.v1.1
prunus_persica	Prupe.3G014800_v2.0.a1 Prupe.3G014800_v2.0.a1
pyrus_communis	pycom09g18760 pycom17g26980
rosa_chinensis	RchiOBHm_Chr3g0488771
rosa_laevigata	RLG00000022922
rosa_multiflora	Rmu_sc0001208.1_g000048 Rmu_sc0006246.1_g000010
rosa_roxburghii	Rroxscaffold_6G00393860
rosa_rugosa	Rorug03G0241600
rosa_samantha	Rh3AG289700 Rh3BG326800 Rh3CG324200 Rh3DG322700
rosa_wichuraiana	Rw3G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	780
AccII	CGCG	6 cut(s)	159, 173, 189, 194, 206, 299
AcoI	YGGCCR	2 cut(s)	283, 366
AfiI	CCNNNNNNNGG	7 cut(s)	229, 319, 392, 411, 457, 558, 780
AgsI	TTSAA	2 cut(s)	639, 703
AjuI	GAANNNNNNNTTGG	4 cut(s)	380, 412, 425, 457
AluBI	AGCT	1 cut(s)	488
AluI	AGCT	1 cut(s)	488
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	603
AoxI	GGCC	6 cut(s)	174, 231, 283, 366, 415, 459
ApeKI	GCWGC	2 cut(s)	315, 735
ArsI	GACNNNNNNTTYG	2 cut(s)	658, 690
AspLEI	GCGC	5 cut(s)	161, 206, 271, 299, 383
AspS9I	GGNCC	3 cut(s)	310, 415, 445
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	112, 391
AvaII	GGWCC	2 cut(s)	310, 445
BalI	TGGCCA	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	302, 747
BccI	CCATC	3 cut(s)	362, 551, 734
BceAI	ACGGC	2 cut(s)	232, 381
BclI	TGATCA	1 cut(s)	585
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	603
BfaI	CTAG	2 cut(s)	564, 732
BfmI	CTRYAG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	272
BglII	AGATCT	1 cut(s)	288
BisI	GCNGC	7 cut(s)	174, 202, 211, 295, 316, 713, 736
BlpI	GCTNAGC	1 cut(s)	260
BlsI	GCNGC	7 cut(s)	175, 203, 212, 296, 317, 714, 737
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	2 cut(s)	310, 445
BmgT120I	GGNCC	3 cut(s)	310, 415, 445
BmiI	GGNNCC	2 cut(s)	349, 416
BmrFI	CCNGG	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	627
Bpu1102I	GCTNAGC	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	345
BsaBI	GATNNNNATC	1 cut(s)	476
BsaJI	CCNNGG	1 cut(s)	405
BsaXI	ACNNNNNCTCC	4 cut(s)	51, 81, 161, 191
Bsc4I	CCNNNNNNNGG	7 cut(s)	229, 319, 392, 411, 457, 558, 780
Bse118I	RCCGGY	3 cut(s)	25, 233, 599
Bse1I	ACTGG	4 cut(s)	505, 610, 649, 686
Bse3DI	GCAATG	1 cut(s)	598
Bse8I	GATNNNNATC	1 cut(s)	476
BseDI	CCNNGG	1 cut(s)	405
BseJI	GATNNNNATC	1 cut(s)	476
BseLI	CCNNNNNNNGG	7 cut(s)	229, 319, 392, 411, 457, 558, 780
BseMI	GCAATG	1 cut(s)	598
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	4 cut(s)	505, 610, 649, 686
BseRI	GAGGAG	8 cut(s)	23, 26, 29, 32, 35, 38, 59, 552
BseXI	GCAGC	2 cut(s)	302, 747
Bsh1236I	CGCG	6 cut(s)	159, 173, 189, 194, 206, 299
BshFI	GGCC	6 cut(s)	176, 233, 285, 368, 417, 461
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	4 cut(s)	26, 234, 345, 600
BslFI	GGGAC	1 cut(s)	675
BslI	CCNNNNNNNGG	7 cut(s)	229, 319, 392, 411, 457, 558, 780
BsmAI	GTCTC	1 cut(s)	603
BsmFI	GGGAC	1 cut(s)	675
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	6 cut(s)	176, 233, 285, 368, 417, 461
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	4 cut(s)	288, 471, 585, 627
Bsp1720I	GCTNAGC	1 cut(s)	260
Bsp68I	TCGCGA	1 cut(s)	189
BspANI	GGCC	6 cut(s)	176, 233, 285, 368, 417, 461
BspCNI	CTCAG	1 cut(s)	252
BspFNI	CGCG	6 cut(s)	159, 173, 189, 194, 206, 299
BspLI	GGNNCC	2 cut(s)	349, 416
BspMAI	CTGCAG	1 cut(s)	622
BsrDI	GCAATG	1 cut(s)	598
BsrFI	RCCGGY	3 cut(s)	25, 233, 599
BsrI	ACTGG	4 cut(s)	505, 610, 649, 686
BssAI	RCCGGY	3 cut(s)	25, 233, 599
BssECI	CCNNGG	1 cut(s)	405
BssMI	GATC	4 cut(s)	288, 471, 585, 627
Bst4CI	ACNGT	3 cut(s)	253, 422, 751
BstC8I	GCNNGC	4 cut(s)	157, 208, 301, 601
BstDEI	CTNAG	1 cut(s)	260
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstFNI	CGCG	6 cut(s)	159, 173, 189, 194, 206, 299
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	5 cut(s)	161, 206, 271, 299, 383
BstKTI	GATC	4 cut(s)	291, 474, 588, 630
BstMAI	GTCTC	1 cut(s)	603
BstMBI	GATC	4 cut(s)	288, 471, 585, 627
BstMWI	GCNNNNNNNGC	6 cut(s)	207, 210, 216, 277, 291, 300
BstNSI	RCATGY	1 cut(s)	331
BstSCI	CCNGG	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	618
BstUI	CGCG	6 cut(s)	159, 173, 189, 194, 206, 299
BstV1I	GCAGC	2 cut(s)	302, 747
BstX2I	RGATCY	1 cut(s)	288
BstYI	RGATCY	1 cut(s)	288
BsuRI	GGCC	6 cut(s)	176, 233, 285, 368, 417, 461
BtgZI	GCGATG	1 cut(s)	753
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	4 cut(s)	418, 585, 603, 627
BtuMI	TCGCGA	1 cut(s)	189
Cac8I	GCNNGC	4 cut(s)	157, 208, 301, 601
CfoI	GCGC	5 cut(s)	161, 206, 271, 299, 383
Cfr10I	RCCGGY	3 cut(s)	25, 233, 599
Cfr13I	GGNCC	3 cut(s)	310, 415, 445
CseI	GACGC	2 cut(s)	25, 200
CviAII	CATG	1 cut(s)	328
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	4 cut(s)	290, 473, 587, 629
DpnII	GATC	4 cut(s)	288, 471, 585, 627
EaeI	YGGCCR	2 cut(s)	283, 366
Eco147I	AGGCCT	1 cut(s)	461
Eco47I	GGWCC	2 cut(s)	310, 445
EcoNI	CCTNNNNNAGG	1 cut(s)	227
FaeI	CATG	1 cut(s)	331
FaiI	YATR	7 cut(s)	329, 393, 497, 554, 614, 687, 689
FaqI	GGGAC	1 cut(s)	675
FatI	CATG	1 cut(s)	327
FbaI	TGATCA	1 cut(s)	585
Fnu4HI	GCNGC	7 cut(s)	174, 202, 211, 295, 316, 713, 736
Fsp4HI	GCNGC	7 cut(s)	174, 202, 211, 295, 316, 713, 736
FspBI	CTAG	2 cut(s)	564, 732
GlaI	GCGC	5 cut(s)	160, 205, 270, 298, 382
GluI	GCNGC	7 cut(s)	174, 202, 211, 295, 316, 713, 736
GsuI	CTGGAG	1 cut(s)	627
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	6 cut(s)	176, 233, 285, 368, 417, 461
HapII	CCGG	4 cut(s)	26, 234, 345, 600
HgaI	GACGC	2 cut(s)	25, 200
HhaI	GCGC	5 cut(s)	161, 206, 271, 299, 383
Hin1II	CATG	1 cut(s)	331
Hin6I	GCGC	5 cut(s)	159, 204, 269, 297, 381
HinP1I	GCGC	5 cut(s)	159, 204, 269, 297, 381
HinfI	GANTC	3 cut(s)	125, 706, 818
HpaII	CCGG	4 cut(s)	26, 234, 345, 600
HphI	GGTGA	2 cut(s)	112, 391
Hpy188I	TCNGA	3 cut(s)	181, 242, 432
Hpy188III	TCNNGA	5 cut(s)	188, 451, 481, 639, 822
Hpy99I	CGWCG	3 cut(s)	19, 194, 253
HpyAV	CCTTC	4 cut(s)	93, 127, 223, 527
HpyCH4III	ACNGT	3 cut(s)	253, 422, 751
HpyCH4V	TGCA	2 cut(s)	339, 620
HpyF10VI	GCNNNNNNNGC	6 cut(s)	207, 210, 216, 277, 291, 300
HpyF3I	CTNAG	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	331
HspAI	GCGC	5 cut(s)	159, 204, 269, 297, 381
KroI	GCCGGC	1 cut(s)	599
KroNI	GCCGGC	1 cut(s)	601
Ksp22I	TGATCA	1 cut(s)	585
Kzo9I	GATC	4 cut(s)	288, 471, 585, 627
LmnI	GCTCC	3 cut(s)	36, 388, 775
Lsp1109I	GCAGC	2 cut(s)	302, 747
MaeI	CTAG	2 cut(s)	564, 732
MaeIII	GTNAC	3 cut(s)	422, 727, 751
MalI	GATC	4 cut(s)	290, 473, 587, 629
MboI	GATC	4 cut(s)	288, 471, 585, 627
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	33
MlsI	TGGCCA	1 cut(s)	285
MluCI	AATT	2 cut(s)	667, 778
MluNI	TGGCCA	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	204
Mox20I	TGGCCA	1 cut(s)	285
MroNI	GCCGGC	1 cut(s)	599
MscI	TGGCCA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	690
Msp20I	TGGCCA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	4 cut(s)	26, 234, 345, 600
MspR9I	CCNGG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	339
MvnI	CGCG	6 cut(s)	159, 173, 189, 194, 206, 299
MwoI	GCNNNNNNNGC	6 cut(s)	207, 210, 216, 277, 291, 300
NaeI	GCCGGC	1 cut(s)	601
NciI	CCSGG	1 cut(s)	345
NdeII	GATC	4 cut(s)	288, 471, 585, 627
NgoMIV	GCCGGC	1 cut(s)	599
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	2 cut(s)	349, 416
NmeAIII	GCCGAG	1 cut(s)	430
NmuCI	GTSAC	1 cut(s)	727
NruI	TCGCGA	1 cut(s)	189
NspI	RCATGY	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	461
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 177
PctI	GAATGC	1 cut(s)	339
PdiI	GCCGGC	1 cut(s)	601
PfeI	GAWTC	1 cut(s)	706
PflMI	CCANNNNNTGG	1 cut(s)	780
PfoI	TCCNGGA	1 cut(s)	343
PkrI	GCNGC	7 cut(s)	175, 203, 212, 296, 317, 714, 737
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PspN4I	GGNNCC	2 cut(s)	349, 416
PspPI	GGNCC	3 cut(s)	310, 415, 445
PstI	CTGCAG	1 cut(s)	622
PsuI	RGATCY	1 cut(s)	288
RruI	TCGCGA	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	690
SatI	GCNGC	7 cut(s)	174, 202, 211, 295, 316, 713, 736
Sau3AI	GATC	4 cut(s)	288, 471, 585, 627
Sau96I	GGNCC	3 cut(s)	310, 415, 445
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	7 cut(s)	119, 167, 225, 312, 353, 490, 729
SfcI	CTRYAG	1 cut(s)	618
SgrAI	CRCCGGYG	1 cut(s)	25
SinI	GGWCC	2 cut(s)	310, 445
SmiMI	CAYNNNNRTG	1 cut(s)	690
Sse9I	AATT	2 cut(s)	667, 778
SseBI	AGGCCT	1 cut(s)	461
SspMI	CTAG	2 cut(s)	564, 732
StuI	AGGCCT	1 cut(s)	461
StyD4I	CCNGG	1 cut(s)	343
TaaI	ACNGT	3 cut(s)	253, 422, 751
TaqI	TCGA	2 cut(s)	276, 306
TasI	AATT	2 cut(s)	667, 778
TauI	GCSGC	5 cut(s)	176, 204, 213, 297, 715
TfiI	GAWTC	1 cut(s)	706
TscAI	CASTG	4 cut(s)	425, 585, 610, 627
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	2 cut(s)	315, 735
Tsp45I	GTSAC	1 cut(s)	727
TspRI	CASTG	4 cut(s)	425, 585, 610, 627
Van91I	CCANNNNNTGG	1 cut(s)	780
VpaK11BI	GGWCC	2 cut(s)	310, 445
XagI	CCTNNNNNAGG	1 cut(s)	227
XceI	RCATGY	1 cut(s)	331
XspI	CTAG	2 cut(s)	564, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.