Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004820

Physical Location & Seq

Genomic Coordinates Forward (+)

799500 .. 808540

Gene Structure 9041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G03380.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3294 bp

ATGGGAGATCCGTTGGAGAGGTTGGGTTCTCAGGCATCAATGGCTACTGAGTCTGTCATGAAGGAGGACTTGTGTTTAGAGATCGATCCTCCCTTAACTGAATCCGTTGCCACCGCTGAAGATTGGCGTCGTGCTCTCGGTAAGGTTGTTCCCGCCGTCGTTGTACTCCGCACAACGGCTTGTCGCGCCTTTGATACCGAGTCCGCCGGTGCTAGCTATGCTACTGGTTTTATCGTTGATAAGCGACGTGGGATCATCCTCACCAATCGCCATGTGGTTAAGCCAGGCCCAGTAGTTGCTGAGGCAATGTTTGTGAACCGAGAGGAAATCCCAATCTATCCTGTATACAGGGATCCGGTCCATGACTTTGGCTTCTTTTGTTATGATCCCAGTGCTGTACAGTTTTTGACTTACCAAGAAATTCCTCTTGCCCCAGAGGCGGCTTCTGTTGGACTCGAAATTAGGGTTGTTGGAAATGATAGCGGAGAAAAGGTTTCCATACTGGCTGGTACTCTTGCGCGGTTGGATCGGGATGCTCCACATTACAAAAAGGATGGTTATAACGACTTCAATACGTTTTATATGCAAGCAGCATCAGGTACTAAAGGTGGTTCAAGTGGTTCTCCCGTCATTGATTGGCAAGGCAGGGCAGTAGCTTTGAATGCTGGCAGCAAGTCGTCAAGTGCATCAGCCTTCTTCCTACCACTTCAACGAGTTGTTAGGGCGTTAAGTTTTCTCCAAAAAAGCATTGACTCGCGGACGGATAAGCCAAAAGCAGTTCATATTCCTCGTGGTACACTTCAGATGACATTTCTTCATAAAGGATTCGATGAGATACGGCGACTTGGTCTCAGGAGCGAAACTGAACAGGTGGTTCGACATGCATCTCCAACTGGGGAAACAGGAATGCTTGTTGTCGATTCTGTGGTGCCAAGTGGCCCTGCTGATAAACATTTGGAGCCGGGAGATGTTCTTGTTCGGGTGAATGGAACAGTGCTCACACAATTTTTGAACTTGGAGAATCTGCTTGATGACGGTGTTGGCCAGATACTTGAATTGGAGATTGAAAGGGGTGGACAACCACTATCTGTTAGTGTATCAGTACAAGATTTACACTCAATCACTCCAGATCACTTCCTGGAAGTAAGCGGTGCTGTAATTCATCCGTTGTCTTATCAGCAGGCTCGCAATTTTCGTTTTCCTTGTGGCCTGGCTTATGTTGCGGACCCTGGATACATGCTATTTAGAGCTGGGGTCCCTCGACATGCTATCATAAAGAAGGTTGCTAATGAGGATATTTCCAGTCTTGGAGACTTAGTATCTGTTCTTTCAAAGCTTTCTAGGGGTGCTCGTGTTCCATTGGAATATATGTCTCACACTGATCGTCATCGCAAGAAGTCTGTGTTAGTCACGATTGATCATCATGAATGGTACGCTCCTCCTCAGTTGTATACCCGTAATGACAGTTCCGGTTTATGGGATGCGAAACCTGCAATTGAACCTGCTTCTGTTTCACCATCTATTGGTAATAATGGCTTTCCTATAAGCCAAGATATTTCTCTATGCCATCACGATACGGAACCCATGCATGAAGTGAATGTTCGTGGGGTTACTGATATTGCAGCGATTATGGAAACTTCTAGTGGGGATGGTTCTCAGAATGATTTTGGCTCAGAAGCAAAGAAACAAAGAGTTGACGAGGATTCTTCAGATGGGATTGCTGCAAACGGTTCCTTATATGGCAGTGAATTTAAATCTGATGATGCAATGGAAACAGATACTACAGTTTTAAGAGACTTCGAAGGTGCAACAGCACTGTCTGCTAATGCTTCATTGGCTGAGCGTGCTATTGAGCCTGCACTTGTCATGTTTGAGGTTCATGTGCCACCATCGTGCAGTCTTGATGGTGTACACTCACAACATTTCTTTGGGACTGGCATCATTATATATCATTCTTCTAACATGGGGCTTGCTGTGGTGGACAAAAACACAGTTGCGATTTCTGCATCTGATGTTATGTTGTCCTTTGCTGCTTTTCCAGTCGAGATTCCTGGAGAGGTAGTATTTCTTCATCCCGTTCACAACTATGCTCTGATTGCGTATAATCCATCAGCAATGGATCCTGCCAGTGCTTCAGTCATTCGTGCAGCTGAGCTACTACCTGAACCTGCACTCCAACGTGGAGATTCAGTCTATCTTGTCGGATTGAGTAGGAACCTTCAAGCTACATCAAGAAAATCTATTGTAACCAATCCATGTGCAGCGTTAAACATTGGTTCTGCTGATTCTCCCCGTTACAGAGCTACTAATATGGAAGTAATTGAGCTTGATACAGATTTTGGTAGCTCATTTTCAGGGGCGCTGACTGATGAGCAGGGAAGAATTCGGGCTATTTGGGGAAGTTTTTCGACTCAGGTTAAATATAGTTCCACTTCTTCAGAAGACCACCAGTTTGTCAGAGGTATCCCAGTATATGCAATCAGCCAAGTCCTTGAAAAAATCATAACCGGTGGAAATGGACCAGCTCTTCTCATAAATGGTGTCAAAAGGCCAATGCCACTTGTTCGGATTTTGGAAGTTGAATTGTATCCTACTTTGCTTTCAAAAGCCCGGAGTTTTGGTCTGAGTGATGAATGGATCCAAGTCCTAGTCAAGAAGGATCCTGTTAGACGTCAAGTTCTGCGTGTTAAAGGTTGCCTGGCAGGATCAAAAGCTGAAAACCTTCTTGAACAAGGCGATATGGTTCTGGCAGTCAATAAGATGCCAGTTACATGCTTCAATGACATAGAAGCTGCTTGCCAAACATTGGATAAGGGTAGTTACAGCGATGAAAATCTCAATCTAACAATCCTTAGACAGGGCCAAGAACTGGAGCTCGTAGTTGGAACTGATAAGAGAGATGGGAATGGAACGACAAGAGTGATAAATTGGTGCGGATGCGTTGTTCAGGATCCTCATCCTGCGGTTCGTGCTCTTGGATTTCTTCCTGAGGAAGGTCATGGTGTCTATGTCACAAGATGGTGTCACGGGAGTCCCGCTCACCGATATGGCCTCTACGCGCTTCAATGGATCGTGGAAGTTAATGGGAAGAAGACTCCTGACCTAAACGCATTCGCAGATGCTACCAAGGAGCTAGAACACGGGCAGTTTGTGCGTATTAGGACTGTTCATCTAAACGGCAAGCCACGAGTATTGACTCTGAAACAAGATCTCCATTACTGGCCGACTTGGGAATTGAGGTTCGACCCAGAGACTGCTCTTTGGCGGAGAAATATATTGAAAGCCTTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0010109 GO:0010205 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0042548 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_1 PDZ_2 Trypsin_2

Protein Analysis

1097

Amino Acids

119.88

Weight (kDa)

5.73

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin_2	PF13365	74 - 220	5.6e-21	Trypsin-like peptidase domain
PDZ_2	PF13180	299 - 368	7e-07	PDZ domain
PDZ_1	PF12812	373 - 446	8.9e-17	PDZ-like domain
PDZ_1	PF12812	938 - 1013	7.2e-07	PDZ-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03380 AT3G03380
fragaria_vesca	FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890
malus_domestica	MD17G1256700.v1.1
prunus_persica	Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1
pyrus_communis	pycom17g25890
rosa_chinensis	RchiOBHm_Chr7g0220101
rosa_laevigata	RLG00000002258
rosa_multiflora	Rmu_sc0007553.1_g000006 Rmu_sc0018981.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239790
rosa_rugosa	Rorug07G0188800 Rorug07G0188900 Rorug07G0188900 Rorug07G0189000
rosa_samantha	Rh7AG332500 Rh7BG322400 Rh7CG350000 Rh7DG328200
rosa_wichuraiana	Rw7G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	561
AatII	GACGTC	1 cut(s)	2674
Acc36I	ACCTGC	3 cut(s)	1498, 1510, 2176
AccB1I	GGYRCC	1 cut(s)	928
AccB7I	CCANNNNNTGG	3 cut(s)	1523, 2806, 2869
AccBSI	CCGCTC	1 cut(s)	3038
AccI	GTMKAC	2 cut(s)	345, 1451
AccII	CGCG	4 cut(s)	186, 520, 757, 3059
AcoI	YGGCCR	2 cut(s)	1042, 3221
AcsI	RAATTY	3 cut(s)	420, 1748, 2382
AcuI	CTGAAG	5 cut(s)	138, 785, 1692, 2118, 2421
AcyI	GRCGYC	2 cut(s)	127, 2671
AfaI	GTAC	8 cut(s)	165, 399, 511, 601, 796, 1104, 1433, 1911
AfiI	CCNNNNNNNGG	8 cut(s)	175, 439, 1476, 1523, 2806, 2857, 2869, 2993
AgeI	ACCGGT	1 cut(s)	2507
AjiI	CACGTC	1 cut(s)	248
AjnI	CCWGG	6 cut(s)	283, 1137, 1209, 1228, 2050, 2697
AleI	CACNNNNGTG	1 cut(s)	1891
AloI	GAACNNNNNNTCC	6 cut(s)	2157, 2189, 2928, 2960, 3224, 3256
Alw21I	GWGCWC	5 cut(s)	136, 999, 1351, 2877, 2974
Alw26I	GTCTC	5 cut(s)	854, 1305, 1377, 1788, 3245
AlwNI	CAGNNNCTG	1 cut(s)	3254
AoxI	GGCC	8 cut(s)	286, 937, 1042, 1207, 2549, 2860, 3049, 3221
ApeKI	GCWGC	8 cut(s)	590, 669, 1622, 1721, 2030, 2147, 2261, 2792
ApoI	RAATTY	3 cut(s)	420, 1748, 2382
ArsI	GACNNNNNNTTYG	2 cut(s)	2435, 2467
AsiGI	ACCGGT	1 cut(s)	2507
Asp700I	GAANNNNTTC	2 cut(s)	2404, 2721
AspLEI	GCGC	4 cut(s)	188, 520, 2362, 3061
AspS9I	GGNCC	7 cut(s)	287, 358, 938, 1225, 1255, 2519, 2860
AsuC2I	CCSGG	2 cut(s)	963, 2611
AsuHPI	GGTGA	4 cut(s)	253, 994, 1506, 3032
AsuII	TTCGAA	1 cut(s)	1800
AsuNHI	GCTAGC	1 cut(s)	212
AvaII	GGWCC	4 cut(s)	358, 1225, 1255, 2519
AxyI	CCTNAGG	1 cut(s)	2988
BaeI	ACNNNNGTAYC	2 cut(s)	1770, 1803
BalI	TGGCCA	1 cut(s)	1044
BamHI	GGATCC	5 cut(s)	352, 2119, 2637, 2659, 2950
BanI	GGYRCC	1 cut(s)	928
BanII	GRGCYC	1 cut(s)	2877
BarI	GAAGNNNNNNTAC	2 cut(s)	2052, 2084
BauI	CACGAG	3 cut(s)	789, 1350, 3186
BbsI	GAAGAC	2 cut(s)	2448, 3098
Bbv12I	GWGCWC	5 cut(s)	136, 999, 1351, 2877, 2974
BbvCI	CCTCAGC	1 cut(s)	300
BbvI	GCAGC	8 cut(s)	602, 681, 1634, 1708, 2017, 2159, 2273, 2779
BceAI	ACGGC	4 cut(s)	140, 192, 854, 3193
BciT130I	CCWGG	6 cut(s)	285, 1139, 1211, 1230, 2052, 2699
BciVI	GTATCC	3 cut(s)	1226, 2474, 2598
BclI	TGATCA	1 cut(s)	1417
BcnI	CCSGG	2 cut(s)	963, 2611
BcoDI	GTCTC	5 cut(s)	854, 1305, 1377, 1788, 3245
BfaI	CTAG	5 cut(s)	213, 1341, 1641, 2648, 3134
BfmI	CTRYAG	1 cut(s)	1782
BfoI	RGCGCY	1 cut(s)	2363
BfuAI	ACCTGC	3 cut(s)	1498, 1510, 2176
BfuI	GTATCC	3 cut(s)	1226, 2474, 2598
BglI	GCCNNNNNGGC	1 cut(s)	437
BglII	AGATCT	1 cut(s)	3208
BisI	GCNGC	9 cut(s)	441, 591, 670, 1623, 1722, 2031, 2148, 2262, 2793
BlpI	GCTNAGC	2 cut(s)	1839, 2151
BlsI	GCNGC	9 cut(s)	442, 592, 671, 1624, 1723, 2032, 2149, 2263, 2794
Bme1390I	CCNGG	8 cut(s)	285, 963, 1139, 1211, 1230, 2052, 2611, 2699
Bme18I	GGWCC	4 cut(s)	358, 1225, 1255, 2519
BmgBI	CACGTC	1 cut(s)	248
BmgT120I	GGNCC	7 cut(s)	287, 358, 938, 1225, 1255, 2519, 2860
BmrFI	CCNGG	8 cut(s)	285, 963, 1139, 1211, 1230, 2052, 2611, 2699
BmrI	ACTGGG	4 cut(s)	284, 384, 903, 2462
BmtI	GCTAGC	1 cut(s)	216
BmuI	ACTGGG	4 cut(s)	284, 384, 903, 2462
BpiI	GAAGAC	2 cut(s)	2448, 3098
BplI	GAGNNNNNCTC	2 cut(s)	3022, 3054
BpmI	CTGGAG	3 cut(s)	1110, 2073, 2891
Bpu10I	CCTNAGC	1 cut(s)	300
Bpu1102I	GCTNAGC	2 cut(s)	1839, 2151
Bpu14I	TTCGAA	1 cut(s)	1800
BpuMI	CCSGG	2 cut(s)	963, 2611
Bsa29I	ATCGAT	1 cut(s)	84
BsaBI	GATNNNNATC	3 cut(s)	1386, 2832, 2955
BsaHI	GRCGYC	2 cut(s)	127, 2671
BsaI	GGTCTC	1 cut(s)	854
BsaJI	CCNNGG	2 cut(s)	1228, 3126
BsaWI	WCCGGW	3 cut(s)	355, 1469, 2507
Bsc4I	CCNNNNNNNGG	8 cut(s)	175, 439, 1476, 1523, 2806, 2857, 2869, 2993
Bse118I	RCCGGY	2 cut(s)	206, 2507
Bse21I	CCTNAGG	1 cut(s)	2988
Bse3DI	GCAATG	3 cut(s)	312, 1773, 2121
Bse8I	GATNNNNATC	3 cut(s)	1386, 2832, 2955
BseBI	CCWGG	6 cut(s)	285, 1139, 1211, 1230, 2052, 2699
BseCI	ATCGAT	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	1228, 3126
BseGI	GGATG	9 cut(s)	255, 538, 559, 1162, 1486, 1654, 2071, 2942, 2956
BseJI	GATNNNNATC	3 cut(s)	1386, 2832, 2955
BseLI	CCNNNNNNNGG	8 cut(s)	175, 439, 1476, 1523, 2806, 2857, 2869, 2993
BseMI	GCAATG	3 cut(s)	312, 1773, 2121
BseRI	GAGGAG	2 cut(s)	1428, 1431
BseXI	GCAGC	8 cut(s)	602, 681, 1634, 1708, 2017, 2159, 2273, 2779
BseYI	CCCAGC	1 cut(s)	1250
BsgI	GTGCAG	5 cut(s)	1842, 1915, 2154, 2166, 2280
Bsh1236I	CGCG	4 cut(s)	186, 520, 757, 3059
BshFI	GGCC	8 cut(s)	288, 939, 1044, 1209, 2551, 2862, 3051, 3223
BshNI	GGYRCC	1 cut(s)	928
BshTI	ACCGGT	1 cut(s)	2507
BshVI	ATCGAT	1 cut(s)	84
BsiHKAI	GWGCWC	5 cut(s)	136, 999, 1351, 2877, 2974
BsiSI	CCGG	6 cut(s)	207, 356, 962, 1470, 2508, 2611
BslFI	GGGAC	3 cut(s)	1241, 1945, 3018
BslI	CCNNNNNNNGG	8 cut(s)	175, 439, 1476, 1523, 2806, 2857, 2869, 2993
BsmAI	GTCTC	5 cut(s)	854, 1305, 1377, 1788, 3245
BsmFI	GGGAC	3 cut(s)	1241, 1945, 3018
BsmI	GAATGC	3 cut(s)	667, 912, 3110
BsnI	GGCC	8 cut(s)	288, 939, 1044, 1209, 2551, 2862, 3051, 3223
Bso31I	GGTCTC	1 cut(s)	854
Bsp119I	TTCGAA	1 cut(s)	1800
Bsp1286I	GDGCHC	5 cut(s)	136, 999, 1351, 2877, 2974
Bsp1407I	TGTACA	2 cut(s)	397, 1909
Bsp1720I	GCTNAGC	2 cut(s)	1839, 2151
BspANI	GGCC	8 cut(s)	288, 939, 1044, 1209, 2551, 2862, 3051, 3223
BspDI	ATCGAT	1 cut(s)	84
BspFNI	CGCG	4 cut(s)	186, 520, 757, 3059
BspHI	TCATGA	2 cut(s)	57, 1423
BspMI	ACCTGC	3 cut(s)	1498, 1510, 2176
BspOI	GCTAGC	1 cut(s)	216
BspQI	GCTCTTC	1 cut(s)	2532
BspT104I	TTCGAA	1 cut(s)	1800
BspT107I	GGYRCC	1 cut(s)	928
BspTNI	GGTCTC	1 cut(s)	854
BsrBI	CCGCTC	1 cut(s)	3038
BsrDI	GCAATG	3 cut(s)	312, 1773, 2121
BsrFI	RCCGGY	2 cut(s)	206, 2507
BsrGI	TGTACA	2 cut(s)	397, 1909
BssAI	RCCGGY	2 cut(s)	206, 2507
BssECI	CCNNGG	2 cut(s)	1228, 3126
BssNAI	GTATAC	2 cut(s)	346, 1452
BssNI	GRCGYC	2 cut(s)	127, 2671
BssSI	CACGAG	3 cut(s)	789, 1350, 3186
BssT1I	CCWWGG	1 cut(s)	3126
Bst1107I	GTATAC	2 cut(s)	346, 1452
Bst2BI	CACGAG	3 cut(s)	789, 1350, 3186
Bst2UI	CCWGG	6 cut(s)	285, 1139, 1211, 1230, 2052, 2699
Bst4CI	ACNGT	9 cut(s)	402, 994, 1037, 1466, 1730, 1786, 1818, 1993, 3166
Bst6I	CTCTTC	1 cut(s)	2532
BstACI	GRCGYC	2 cut(s)	127, 2671
BstAPI	GCANNNNNTGC	2 cut(s)	1820, 3151
BstAUI	TGTACA	2 cut(s)	397, 1909
BstBI	TTCGAA	1 cut(s)	1800
BstENI	CCTNNNNNAGG	2 cut(s)	2855, 2991
BstF5I	GGATG	9 cut(s)	255, 538, 559, 1162, 1486, 1654, 2071, 2942, 2956
BstFNI	CGCG	4 cut(s)	186, 520, 757, 3059
BstH2I	RGCGCY	1 cut(s)	2363
BstHHI	GCGC	4 cut(s)	188, 520, 2362, 3061
BstMAI	GTCTC	5 cut(s)	854, 1305, 1377, 1788, 3245
BstNI	CCWGG	6 cut(s)	285, 1139, 1211, 1230, 2052, 2699
BstNSI	RCATGY	4 cut(s)	884, 1240, 1268, 2775
BstSCI	CCNGG	8 cut(s)	283, 961, 1137, 1209, 1228, 2050, 2609, 2697
BstSFI	CTRYAG	1 cut(s)	1782
BstUI	CGCG	4 cut(s)	186, 520, 757, 3059
BstV1I	GCAGC	8 cut(s)	602, 681, 1634, 1708, 2017, 2159, 2273, 2779
BstV2I	GAAGAC	2 cut(s)	2448, 3098
BstX2I	RGATCY	7 cut(s)	7, 352, 2119, 2637, 2659, 2950, 3208
BstXI	CCANNNNNNTGG	1 cut(s)	368
BstYI	RGATCY	7 cut(s)	7, 352, 2119, 2637, 2659, 2950, 3208
BstZ17I	GTATAC	2 cut(s)	346, 1452
Bsu15I	ATCGAT	1 cut(s)	84
Bsu36I	CCTNAGG	1 cut(s)	2988
BsuI	GTATCC	3 cut(s)	1226, 2474, 2598
BsuRI	GGCC	8 cut(s)	288, 939, 1044, 1209, 2551, 2862, 3051, 3223
BsuTUI	ATCGAT	1 cut(s)	84
BtgZI	GCGATG	2 cut(s)	1373, 2841
BtrI	CACGTC	1 cut(s)	248
BtsCI	GGATG	9 cut(s)	255, 538, 559, 1162, 1486, 1654, 2071, 2942, 2956
BtsI	GCAGTG	1 cut(s)	1750
BtsIMutI	CAGTG	6 cut(s)	397, 999, 1377, 1750, 1814, 2134
BveI	ACCTGC	3 cut(s)	1498, 1510, 2176
CaiI	CAGNNNCTG	1 cut(s)	3254
CciI	TCATGA	2 cut(s)	57, 1423
CfoI	GCGC	4 cut(s)	188, 520, 2362, 3061
Cfr10I	RCCGGY	2 cut(s)	206, 2507
Cfr13I	GGNCC	7 cut(s)	287, 358, 938, 1225, 1255, 2519, 2860
ClaI	ATCGAT	1 cut(s)	84
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	8 cut(s)	164, 398, 510, 600, 795, 1103, 1432, 1910
CspAI	ACCGGT	1 cut(s)	2507
CspCI	CAANNNNNGTGG	2 cut(s)	3174, 3209
CviQI	GTAC	8 cut(s)	164, 398, 510, 600, 795, 1103, 1432, 1910
DraI	TTTAAA	1 cut(s)	1753
EaeI	YGGCCR	2 cut(s)	1042, 3221
Eam1104I	CTCTTC	1 cut(s)	2532
EarI	CTCTTC	1 cut(s)	2532
EciI	GGCGGA	2 cut(s)	193, 3280
Ecl136II	GAGCTC	1 cut(s)	2875
Eco130I	CCWWGG	1 cut(s)	3126
Eco24I	GRGCYC	1 cut(s)	2877
Eco31I	GGTCTC	1 cut(s)	854
Eco47I	GGWCC	4 cut(s)	358, 1225, 1255, 2519
Eco53kI	GAGCTC	1 cut(s)	2875
Eco57I	CTGAAG	5 cut(s)	138, 785, 1692, 2118, 2421
Eco81I	CCTNAGG	1 cut(s)	2988
EcoICRI	GAGCTC	1 cut(s)	2875
EcoNI	CCTNNNNNAGG	2 cut(s)	2855, 2991
EcoO109I	RGGNCCY	1 cut(s)	1255
EcoRI	GAATTC	1 cut(s)	2382
EcoRII	CCWGG	6 cut(s)	283, 1137, 1209, 1228, 2050, 2697
EcoT14I	CCWWGG	1 cut(s)	3126
EcoT22I	ATGCAT	2 cut(s)	886, 1590
EcoT38I	GRGCYC	1 cut(s)	2877
ErhI	CCWWGG	1 cut(s)	3126
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	3 cut(s)	1241, 1945, 3018
FauI	CCCGC	2 cut(s)	160, 3043
FbaI	TGATCA	1 cut(s)	1417
FblI	GTMKAC	2 cut(s)	345, 1451
Fnu4HI	GCNGC	9 cut(s)	441, 591, 670, 1623, 1722, 2031, 2148, 2262, 2793
FokI	GGATG	9 cut(s)	242, 545, 566, 1149, 1493, 1661, 2058, 2943, 2949
FriOI	GRGCYC	1 cut(s)	2877
Fsp4HI	GCNGC	9 cut(s)	441, 591, 670, 1623, 1722, 2031, 2148, 2262, 2793
FspBI	CTAG	5 cut(s)	213, 1341, 1641, 2648, 3134
GlaI	GCGC	4 cut(s)	187, 519, 2361, 3060
GluI	GCNGC	9 cut(s)	441, 591, 670, 1623, 1722, 2031, 2148, 2262, 2793
GsaI	CCCAGC	1 cut(s)	1254
GsuI	CTGGAG	3 cut(s)	1110, 2073, 2891
HaeII	RGCGCY	1 cut(s)	2363
HaeIII	GGCC	8 cut(s)	288, 939, 1044, 1209, 2551, 2862, 3051, 3223
HapII	CCGG	6 cut(s)	207, 356, 962, 1470, 2508, 2611
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	4 cut(s)	188, 520, 2362, 3061
Hin1I	GRCGYC	2 cut(s)	127, 2671
Hin6I	GCGC	4 cut(s)	186, 518, 2360, 3059
HinP1I	GCGC	4 cut(s)	186, 518, 2360, 3059
HincII	GTYRAC	1 cut(s)	1696
HindII	GTYRAC	1 cut(s)	1696
HindIII	AAGCTT	1 cut(s)	1334
HpaII	CCGG	6 cut(s)	207, 356, 962, 1470, 2508, 2611
HphI	GGTGA	4 cut(s)	253, 994, 1506, 3032
Hpy99I	CGWCG	3 cut(s)	132, 161, 249
HpyAV	CCTTC	8 cut(s)	55, 703, 1273, 1796, 2228, 2650, 2732, 2987
HpyCH4III	ACNGT	9 cut(s)	402, 994, 1037, 1466, 1730, 1786, 1818, 1993, 3166
HpyCH4IV	ACGT	4 cut(s)	247, 575, 2179, 2671
HpySE526I	ACGT	4 cut(s)	247, 575, 2179, 2671
Hsp92I	GRCGYC	2 cut(s)	127, 2671
HspAI	GCGC	4 cut(s)	186, 518, 2360, 3059
KflI	GGGWCCC	1 cut(s)	1255
Ksp22I	TGATCA	1 cut(s)	1417
LguI	GCTCTTC	1 cut(s)	2532
LmnI	GCTCC	6 cut(s)	541, 855, 958, 1441, 2872, 3130
Lsp1109I	GCAGC	8 cut(s)	602, 681, 1634, 1708, 2017, 2159, 2273, 2779
MaeI	CTAG	5 cut(s)	213, 1341, 1641, 2648, 3134
MaeII	ACGT	4 cut(s)	247, 575, 2179, 2671
MaeIII	GTNAC	8 cut(s)	1408, 1609, 2245, 2294, 2767, 2819, 3010, 3023
MbiI	CCGCTC	1 cut(s)	3038
MfeI	CAATTG	1 cut(s)	1494
MflI	RGATCY	7 cut(s)	7, 352, 2119, 2637, 2659, 2950, 3208
MhlI	GDGCHC	5 cut(s)	136, 999, 1351, 2877, 2974
MlsI	TGGCCA	1 cut(s)	1044
MluNI	TGGCCA	1 cut(s)	1044
MlyI	GAGTC	8 cut(s)	59, 209, 447, 746, 2404, 3040, 3088, 3190
MmeI	TCCRAC	7 cut(s)	430, 451, 504, 914, 2182, 2200, 2863
Mox20I	TGGCCA	1 cut(s)	1044
Mph1103I	ATGCAT	2 cut(s)	886, 1590
MroXI	GAANNNNTTC	2 cut(s)	2404, 2721
MscI	TGGCCA	1 cut(s)	1044
MseI	TTAA	9 cut(s)	95, 279, 728, 1752, 1790, 2267, 2418, 2688, 3081
MslI	CAYNNNNRTG	3 cut(s)	1891, 2085, 3045
Msp20I	TGGCCA	1 cut(s)	1044
MspA1I	CMGCKG	2 cut(s)	116, 2150
MspI	CCGG	6 cut(s)	207, 356, 962, 1470, 2508, 2611
MspR9I	CCNGG	8 cut(s)	285, 963, 1139, 1211, 1230, 2052, 2611, 2699
MunI	CAATTG	1 cut(s)	1494
Mva1269I	GAATGC	3 cut(s)	667, 912, 3110
MvaI	CCWGG	6 cut(s)	285, 1139, 1211, 1230, 2052, 2699
MvnI	CGCG	4 cut(s)	186, 520, 757, 3059
NciI	CCSGG	2 cut(s)	963, 2611
NheI	GCTAGC	1 cut(s)	212
NmuCI	GTSAC	3 cut(s)	1408, 3010, 3023
NsiI	ATGCAT	2 cut(s)	886, 1590
NspI	RCATGY	4 cut(s)	884, 1240, 1268, 2775
NspV	TTCGAA	1 cut(s)	1800
OliI	CACNNNNGTG	1 cut(s)	1891
PagI	TCATGA	2 cut(s)	57, 1423
PciSI	GCTCTTC	1 cut(s)	2532
PcsI	WCGNNNNNNNCGW	1 cut(s)	1192
PctI	GAATGC	3 cut(s)	667, 912, 3110
PdmI	GAANNNNTTC	2 cut(s)	2404, 2721
PfeI	GAWTC	8 cut(s)	101, 825, 920, 1021, 1703, 2047, 2186, 2285
PflFI	GACNNNGTC	1 cut(s)	846
PflMI	CCANNNNNTGG	3 cut(s)	1523, 2806, 2869
PfoI	TCCNGGA	2 cut(s)	1137, 2050
PinAI	ACCGGT	1 cut(s)	2507
PkrI	GCNGC	9 cut(s)	442, 592, 671, 1624, 1723, 2032, 2149, 2263, 2794
PleI	GAGTC	8 cut(s)	58, 208, 447, 746, 2404, 3039, 3088, 3190
PpsI	GAGTC	8 cut(s)	58, 208, 447, 746, 2404, 3039, 3088, 3190
PpuMI	RGGWCCY	1 cut(s)	1255
PsiI	TTATAA	1 cut(s)	561
Psp124BI	GAGCTC	1 cut(s)	2877
Psp5II	RGGWCCY	1 cut(s)	1255
Psp6I	CCWGG	6 cut(s)	283, 1137, 1209, 1228, 2050, 2697
PspFI	CCCAGC	1 cut(s)	1250
PspGI	CCWGG	6 cut(s)	283, 1137, 1209, 1228, 2050, 2697
PspPI	GGNCC	7 cut(s)	287, 358, 938, 1225, 1255, 2519, 2860
PspPPI	RGGWCCY	1 cut(s)	1255
PsrI	GAACNNNNNNTAC	2 cut(s)	1450, 1482
PstNI	CAGNNNCTG	1 cut(s)	3254
PsuI	RGATCY	7 cut(s)	7, 352, 2119, 2637, 2659, 2950, 3208
PsyI	GACNNNGTC	1 cut(s)	846
PvuII	CAGCTG	1 cut(s)	2150
RsaI	GTAC	8 cut(s)	165, 399, 511, 601, 796, 1104, 1433, 1911
RsaNI	GTAC	8 cut(s)	164, 398, 510, 600, 795, 1103, 1432, 1910
RseI	CAYNNNNRTG	3 cut(s)	1891, 2085, 3045
SacI	GAGCTC	1 cut(s)	2877
SapI	GCTCTTC	1 cut(s)	2532
SaqAI	TTAA	9 cut(s)	95, 279, 728, 1752, 1790, 2267, 2418, 2688, 3081
SatI	GCNGC	9 cut(s)	441, 591, 670, 1623, 1722, 2031, 2148, 2262, 2793
Sau96I	GGNCC	7 cut(s)	287, 358, 938, 1225, 1255, 2519, 2860
SchI	GAGTC	8 cut(s)	59, 209, 447, 746, 2404, 3040, 3088, 3190
ScrFI	CCNGG	8 cut(s)	285, 963, 1139, 1211, 1230, 2052, 2611, 2699
SduI	GDGCHC	5 cut(s)	136, 999, 1351, 2877, 2974
SfcI	CTRYAG	1 cut(s)	1782
SfuI	TTCGAA	1 cut(s)	1800
SgrAI	CRCCGGYG	1 cut(s)	206
SinI	GGWCC	4 cut(s)	358, 1225, 1255, 2519
SmiI	ATTTAAAT	1 cut(s)	1753
SmiMI	CAYNNNNRTG	3 cut(s)	1891, 2085, 3045
SspMI	CTAG	5 cut(s)	213, 1341, 1641, 2648, 3134
SstI	GAGCTC	1 cut(s)	2877
StyD4I	CCNGG	8 cut(s)	283, 961, 1137, 1209, 1228, 2050, 2609, 2697
StyI	CCWWGG	1 cut(s)	3126
SwaI	ATTTAAAT	1 cut(s)	1753
TaaI	ACNGT	9 cut(s)	402, 994, 1037, 1466, 1730, 1786, 1818, 1993, 3166
TaiI	ACGT	4 cut(s)	250, 578, 2182, 2674
TatI	WGTACW	4 cut(s)	163, 397, 1102, 1909
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	8 cut(s)	101, 825, 920, 1021, 1703, 2047, 2186, 2285
Tru1I	TTAA	9 cut(s)	95, 279, 728, 1752, 1790, 2267, 2418, 2688, 3081
Tru9I	TTAA	9 cut(s)	95, 279, 728, 1752, 1790, 2267, 2418, 2688, 3081
TscAI	CASTG	6 cut(s)	397, 999, 1384, 1750, 1821, 2134
TseFI	GTSAC	3 cut(s)	1408, 3010, 3023
TseI	GCWGC	8 cut(s)	590, 669, 1622, 1721, 2030, 2147, 2261, 2792
Tsp45I	GTSAC	3 cut(s)	1408, 3010, 3023
TspGWI	ACGGA	4 cut(s)	94, 776, 1155, 1592
TspRI	CASTG	6 cut(s)	397, 999, 1384, 1750, 1821, 2134
Tth111I	GACNNNGTC	1 cut(s)	846
Van91I	CCANNNNNTGG	3 cut(s)	1523, 2806, 2869
VpaK11BI	GGWCC	4 cut(s)	358, 1225, 1255, 2519
XagI	CCTNNNNNAGG	2 cut(s)	2855, 2991
XapI	RAATTY	3 cut(s)	420, 1748, 2382
XceI	RCATGY	4 cut(s)	884, 1240, 1268, 2775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XmiI	GTMKAC	2 cut(s)	345, 1451
XmnI	GAANNNNTTC	2 cut(s)	2404, 2721
XspI	CTAG	5 cut(s)	213, 1341, 1641, 2648, 3134
ZraI	GACGTC	1 cut(s)	2672
Zsp2I	ATGCAT	2 cut(s)	886, 1590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.