Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004820

Physical Location & Seq

Genomic Coordinates Forward (+)

15962297 .. 15965519

Gene Structure 3223 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0188900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTATGCCGCGCTATTAACACCTCAGGGAAGATTCTTATATGATTTCGTCTTGTATGGCCTGCCTAGGCCGGATGCCAAGCTTAATAGGGCTGGGTCGGGACCTGGGGCAGACCCAGATGAGCCGTTGGAGGTCTTTGCTGACGTAGATGCTTCAGTCTTGGACGAACTCTTGAGCACCTTAAAGAAATACCGTTTGAGGGCTAAGGTTGACATTGAGAATGTGGCAGACGAGTTACATTGCTGGCAGCGTTATGGGGGAAAGCTATCTAAGAAGGACTCCTCTGTAGAAGAACCAGAAGCTGCTAGTGTGGGCTGGGGTGCTGGTGTTGATCGCTTAGGCATGTCAACTTCACGTGGAGAGCCTTGTGGATGGCAGTGGTTTAAGGATCCGAGATTGGATTGCCTTGGTTTCAGGGGGATCTTCCCGTCTAATACAACACCACCTTTGGTTGAAGCTGACAAAGAAACAGATGAACAAAACTACCTTCTATGGAGAATAGAAAATGGTGTTGCAGAAGGATCAACCGAGATCCCTAAAGGTGAGGCAATTCCTCTAGAATATAACCTGGTGGCTCTAAATGCAATTAGCTTTGACAAAGGGTGTTATGTGGGCCAAGAGCTTGTTGCTCGAACACACCACAGAGGGGTCATTCGCAAACGCCTGCTTCCTCTAAAATTTCTCAAGGATAGCGGAGAAGAAGCAGAGCAGAAGGTTGCCCCTGGCTCCGAAGTGATTGATAGTGTTTCTGACAAGAAAATTGGTACTGTCACAACTCAACTTGGATGTCGTGGACTTGGTGTCTTGCGTTTGGATGAAGCTTTTAAAGGATCAAGTACATTAACCATACGAGGCCAGGACGATGTGAAGGTCGAGCCTATTAGACCCGATTGGTGGCCGCCTGAATGGTTGCAAGAACATCAGCGTCGAAGTGCAGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0010109 GO:0010205 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0042548 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_1 PDZ_2 Trypsin_2

Protein Analysis

314

Amino Acids

34.81

Weight (kDa)

5.19

Isoelectric Point (pI)

30.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-barrel_CAF17_C	PF25455	219 - 300	2.3e-19	CAF17, C-terminal beta-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03380 AT3G03380
fragaria_vesca	FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890
malus_domestica	MD17G1256700.v1.1
prunus_persica	Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1
pyrus_communis	pycom17g25890
rosa_chinensis	RchiOBHm_Chr7g0220101
rosa_laevigata	RLG00000002258
rosa_multiflora	Rmu_sc0007553.1_g000006 Rmu_sc0018981.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239790
rosa_rugosa	Rorug07G0188800 Rorug07G0188900 Rorug07G0188900 Rorug07G0189000
rosa_samantha	Rh7AG332500 Rh7BG322400 Rh7CG350000 Rh7DG328200
rosa_wichuraiana	Rw7G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	11
AciI	CCGC	3 cut(s)	9, 693, 899
AclWI	GGATC	6 cut(s)	383, 396, 428, 526, 529, 838
AcoI	YGGCCR	1 cut(s)	896
AcsI	RAATTY	1 cut(s)	677
AcuI	CTGAAG	1 cut(s)	138
AcvI	CACGTG	1 cut(s)	356
AfaI	GTAC	2 cut(s)	766, 838
AfiI	CCNNNNNNNGG	3 cut(s)	199, 646, 894
AgsI	TTSAA	1 cut(s)	455
AhdI	GACNNNNNGTC	1 cut(s)	800
AjnI	CCWGG	4 cut(s)	103, 567, 721, 855
AluBI	AGCT	8 cut(s)	82, 265, 302, 458, 591, 622, 821, 938
AluI	AGCT	8 cut(s)	82, 265, 302, 458, 591, 622, 821, 938
Alw21I	GWGCWC	1 cut(s)	179
AlwI	GGATC	6 cut(s)	383, 396, 428, 526, 529, 838
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	5 cut(s)	58, 68, 613, 853, 896
ApeKI	GCWGC	4 cut(s)	247, 302, 935, 938
ApoI	RAATTY	1 cut(s)	677
AspA2I	CCTAGG	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	2 cut(s)	101, 613
AsuHPI	GGTGA	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	101
AvrII	CCTAGG	1 cut(s)	65
AxyI	CCTNAGG	1 cut(s)	24
BamHI	GGATCC	1 cut(s)	388
BbrPI	CACGTG	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	3 cut(s)	259, 289, 925
BccI	CCATC	1 cut(s)	366
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	4 cut(s)	105, 569, 723, 857
BfaI	CTAG	3 cut(s)	66, 306, 557
BfmI	CTRYAG	1 cut(s)	285
BisI	GCNGC	6 cut(s)	9, 248, 303, 899, 936, 939
BlnI	CCTAGG	1 cut(s)	65
BlsI	GCNGC	6 cut(s)	10, 249, 304, 900, 937, 940
Bme1390I	CCNGG	4 cut(s)	105, 569, 723, 857
Bme18I	GGWCC	1 cut(s)	101
BmeRI	GACNNNNNGTC	1 cut(s)	800
BmgT120I	GGNCC	2 cut(s)	101, 613
BmiI	GGNNCC	3 cut(s)	102, 390, 727
BmrFI	CCNGG	4 cut(s)	105, 569, 723, 857
BmsI	GCATC	2 cut(s)	64, 139
Bpu10I	CCTNAGC	2 cut(s)	204, 337
BpuEI	CTTGAG	2 cut(s)	193, 668
BsaAI	YACGTR	1 cut(s)	356
BsaJI	CCNNGG	4 cut(s)	65, 104, 406, 721
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 646, 894
Bse21I	CCTNAGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	238
BseBI	CCWGG	4 cut(s)	105, 569, 723, 857
BseDI	CCNNGG	4 cut(s)	65, 104, 406, 721
BseGI	GGATG	4 cut(s)	79, 377, 791, 820
BseLI	CCNNNNNNNGG	3 cut(s)	199, 646, 894
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	38
BseRI	GAGGAG	1 cut(s)	271
BseXI	GCAGC	3 cut(s)	259, 289, 925
BseYI	CCCAGC	2 cut(s)	92, 315
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	5 cut(s)	60, 70, 615, 855, 898
BsiHKAI	GWGCWC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	3 cut(s)	199, 646, 894
BsmFI	GGGAC	1 cut(s)	114
BsnI	GGCC	5 cut(s)	60, 70, 615, 855, 898
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	6 cut(s)	331, 388, 420, 521, 531, 830
BspACI	CCGC	3 cut(s)	9, 693, 899
BspANI	GGCC	5 cut(s)	60, 70, 615, 855, 898
BspCNI	CTCAG	1 cut(s)	37
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	3 cut(s)	102, 390, 727
BspPI	GGATC	6 cut(s)	383, 396, 428, 526, 529, 838
BsrDI	GCAATG	1 cut(s)	238
BssECI	CCNNGG	4 cut(s)	65, 104, 406, 721
BssMI	GATC	6 cut(s)	331, 388, 420, 521, 531, 830
BssT1I	CCWWGG	2 cut(s)	65, 406
Bst2UI	CCWGG	4 cut(s)	105, 569, 723, 857
Bst4CI	ACNGT	2 cut(s)	194, 769
BstBAI	YACGTR	1 cut(s)	356
BstC8I	GCNNGC	3 cut(s)	62, 245, 665
BstDEI	CTNAG	4 cut(s)	24, 204, 270, 337
BstF5I	GGATG	4 cut(s)	79, 377, 791, 820
BstFNI	CGCG	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	6 cut(s)	334, 391, 423, 524, 534, 833
BstMBI	GATC	6 cut(s)	331, 388, 420, 521, 531, 830
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstNI	CCWGG	4 cut(s)	105, 569, 723, 857
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	4 cut(s)	103, 567, 721, 855
BstSFI	CTRYAG	1 cut(s)	285
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	3 cut(s)	259, 289, 925
BstX2I	RGATCY	3 cut(s)	388, 420, 531
BstYI	RGATCY	3 cut(s)	388, 420, 531
Bsu36I	CCTNAGG	1 cut(s)	24
BsuRI	GGCC	5 cut(s)	60, 70, 615, 855, 898
BtsCI	GGATG	4 cut(s)	79, 377, 791, 820
BtsI	GCAGTG	1 cut(s)	383
BtsIMutI	CAGTG	1 cut(s)	383
Cac8I	GCNNGC	3 cut(s)	62, 245, 665
CaiI	CAGNNNCTG	1 cut(s)	302
CfoI	GCGC	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	101, 613
CseI	GACGC	1 cut(s)	914
CsiI	ACCWGGT	1 cut(s)	567
Csp6I	GTAC	2 cut(s)	765, 837
CviAII	CATG	1 cut(s)	343
CviQI	GTAC	2 cut(s)	765, 837
DdeI	CTNAG	4 cut(s)	24, 204, 270, 337
DpnI	GATC	6 cut(s)	333, 390, 422, 523, 533, 832
DpnII	GATC	6 cut(s)	331, 388, 420, 521, 531, 830
DraI	TTTAAA	1 cut(s)	826
DriI	GACNNNNNGTC	1 cut(s)	800
EaeI	YGGCCR	1 cut(s)	896
Eam1105I	GACNNNNNGTC	1 cut(s)	800
Eco130I	CCWWGG	2 cut(s)	65, 406
Eco47I	GGWCC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	138
Eco72I	CACGTG	1 cut(s)	356
Eco81I	CCTNAGG	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	101
EcoRII	CCWGG	4 cut(s)	103, 567, 721, 855
EcoT14I	CCWWGG	2 cut(s)	65, 406
ErhI	CCWWGG	2 cut(s)	65, 406
FaeI	CATG	1 cut(s)	346
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	1 cut(s)	342
Fnu4HI	GCNGC	6 cut(s)	9, 248, 303, 899, 936, 939
FokI	GGATG	4 cut(s)	86, 384, 798, 827
Fsp4HI	GCNGC	6 cut(s)	9, 248, 303, 899, 936, 939
FspBI	CTAG	3 cut(s)	66, 306, 557
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	6 cut(s)	9, 248, 303, 899, 936, 939
GsaI	CCCAGC	2 cut(s)	96, 319
HaeIII	GGCC	5 cut(s)	60, 70, 615, 855, 898
HapII	CCGG	1 cut(s)	71
HgaI	GACGC	1 cut(s)	914
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	1 cut(s)	346
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HincII	GTYRAC	2 cut(s)	211, 348
HindII	GTYRAC	2 cut(s)	211, 348
HindIII	AAGCTT	2 cut(s)	80, 819
HinfI	GANTC	2 cut(s)	33, 278
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	1 cut(s)	554
Hpy166II	GTNNAC	3 cut(s)	211, 348, 794
Hpy188I	TCNGA	3 cut(s)	393, 730, 751
Hpy188III	TCNNGA	3 cut(s)	99, 172, 557
Hpy8I	GTNNAC	3 cut(s)	211, 348, 794
Hpy99I	CGWCG	1 cut(s)	930
HpyAV	CCTTC	5 cut(s)	268, 497, 512, 706, 862
HpyCH4III	ACNGT	2 cut(s)	194, 769
HpyCH4IV	ACGT	2 cut(s)	144, 355
HpyCH4V	TGCA	4 cut(s)	515, 584, 913, 935
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	4 cut(s)	24, 204, 270, 337
HpySE526I	ACGT	2 cut(s)	144, 355
Hsp92II	CATG	1 cut(s)	346
HspAI	GCGC	1 cut(s)	11
Kzo9I	GATC	6 cut(s)	331, 388, 420, 521, 531, 830
LmnI	GCTCC	1 cut(s)	731
Lsp1109I	GCAGC	3 cut(s)	259, 289, 925
LweI	GCATC	2 cut(s)	64, 139
MabI	ACCWGGT	1 cut(s)	567
MaeI	CTAG	3 cut(s)	66, 306, 557
MaeII	ACGT	2 cut(s)	144, 355
MaeIII	GTNAC	2 cut(s)	234, 769
MalI	GATC	6 cut(s)	333, 390, 422, 523, 533, 832
MboI	GATC	6 cut(s)	331, 388, 420, 521, 531, 830
MboII	GAAGA	4 cut(s)	42, 302, 415, 710
MflI	RGATCY	3 cut(s)	388, 420, 531
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	4 cut(s)	549, 585, 677, 759
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	9 cut(s)	33, 124, 192, 292, 538, 564, 638, 681, 845
MseI	TTAA	7 cut(s)	17, 84, 182, 384, 825, 842, 943
MspA1I	CMGCKG	1 cut(s)	938
MspI	CCGG	1 cut(s)	71
MspR9I	CCNGG	4 cut(s)	105, 569, 723, 857
MvaI	CCWGG	4 cut(s)	105, 569, 723, 857
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	581
NdeII	GATC	6 cut(s)	331, 388, 420, 521, 531, 830
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	3 cut(s)	102, 390, 727
NmuCI	GTSAC	1 cut(s)	769
NspI	RCATGY	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	33
PkrI	GCNGC	6 cut(s)	10, 249, 304, 900, 937, 940
PleI	GAGTC	1 cut(s)	272
PmaCI	CACGTG	1 cut(s)	356
PmlI	CACGTG	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	272
Ppu21I	YACGTR	1 cut(s)	356
PpuMI	RGGWCCY	1 cut(s)	101
Psp5II	RGGWCCY	1 cut(s)	101
Psp6I	CCWGG	4 cut(s)	103, 567, 721, 855
PspCI	CACGTG	1 cut(s)	356
PspFI	CCCAGC	2 cut(s)	92, 315
PspGI	CCWGG	4 cut(s)	103, 567, 721, 855
PspN4I	GGNNCC	3 cut(s)	102, 390, 727
PspPI	GGNCC	2 cut(s)	101, 613
PspPPI	RGGWCCY	1 cut(s)	101
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	3 cut(s)	388, 420, 531
PvuII	CAGCTG	1 cut(s)	938
RsaI	GTAC	2 cut(s)	766, 838
RsaNI	GTAC	2 cut(s)	765, 837
SaqAI	TTAA	7 cut(s)	17, 84, 182, 384, 825, 842, 943
SatI	GCNGC	6 cut(s)	9, 248, 303, 899, 936, 939
Sau3AI	GATC	6 cut(s)	331, 388, 420, 521, 531, 830
Sau96I	GGNCC	2 cut(s)	101, 613
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	4 cut(s)	105, 569, 723, 857
SduI	GDGCHC	1 cut(s)	179
SexAI	ACCWGGT	1 cut(s)	567
SfaNI	GCATC	2 cut(s)	64, 139
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	172, 683
SmoI	CTYRAG	2 cut(s)	172, 683
Sse9I	AATT	4 cut(s)	549, 585, 677, 759
SsiI	CCGC	3 cut(s)	9, 693, 899
SspMI	CTAG	3 cut(s)	66, 306, 557
StyD4I	CCNGG	4 cut(s)	103, 567, 721, 855
StyI	CCWWGG	2 cut(s)	65, 406
TaaI	ACNGT	2 cut(s)	194, 769
TaiI	ACGT	2 cut(s)	147, 358
TaqI	TCGA	3 cut(s)	631, 873, 928
TasI	AATT	4 cut(s)	549, 585, 677, 759
TatI	WGTACW	1 cut(s)	836
TauI	GCSGC	2 cut(s)	11, 901
TfiI	GAWTC	1 cut(s)	33
Tru1I	TTAA	7 cut(s)	17, 84, 182, 384, 825, 842, 943
Tru9I	TTAA	7 cut(s)	17, 84, 182, 384, 825, 842, 943
TscAI	CASTG	1 cut(s)	383
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	4 cut(s)	247, 302, 935, 938
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	2 cut(s)	489, 831
TspRI	CASTG	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	101
XapI	RAATTY	1 cut(s)	677
XbaI	TCTAGA	1 cut(s)	556
XceI	RCATGY	1 cut(s)	346
XmaJI	CCTAGG	1 cut(s)	65
XspI	CTAG	3 cut(s)	66, 306, 557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.