Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004820

Physical Location & Seq

Genomic Coordinates Reverse (-)

30604703 .. 30624430

Gene Structure 19728 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2010 bp

ATGGGCGATCCTCTGGAGAGACTTGAATCGGAGGACGCCAGAGGATCGAGCCTGAAGGACGACGAACTCTGCATGGAGATCGACCCGCCTTTCAGAGAAAGCACCGCCACGACCGAGGACTGGCGGAAGGCGCTTGCCAAGGTCGTCCCCGCCGTCGTCGTTTTGAGGACCACGGCGTGTCGTGCCTTCGATACTGAAGCCGCCGGTGCTAGCTATGCCACCGGCTTTGTCGTCGATAAGCGCCGCGGGATCATCCTCACCAACCGCCATGTTGTCAAGCCTGGACCTGTGGTTGCGGAAGCTATGTTTGTGAATCGCGAAGAAGTTCCAGTATATCCTATCTATAGGGATCCGGTTCATGATTTTGGCTTCTTTTGTTATGATCCTGGTGCAATACAGTTTCTGAAGTATGAAGAGATTCCTCTTGCCCCTGAGGCTGCTTCTGTTGGATTAGAAATCAGGGTTGTTGGTAACGATAGTGGTGAGAAGGTCTCCATTTTGGCTGGTACTCTTGCCCGTTTAGATAGAGATGCTCCTTATTACAAAAAGGATGGCTATAATGATTTCAATACATTCTACATGCAAGCTGCATCTGGTACCAAAGGTGGGTCTAGTGGCTCTCCAGTGATTGATTGGCTAGGTAGGGCGGTGGCTTTGAATGCTGGTAGCAAGTCATCAAGTGCCTCAGCATTTTTTTTACCATTGGAACGAGTTGTGAGGGCATTGAAGTTTCTCCAAAATGGCAGAGATTCTTTTGTCAAAAAATGGGAGGCAGTTTCTATACTGCGTGGTACGCTTCAGGTAACTTTTGTCCACAAAGGATTTGATGAGACACGGCGACTTGGTCTTCGAAGTGAGACGGAGCAGAGGGTTCGACATGCATCTCCGCAGGGTGAAACTGGAATGCTTGTTGTTGAATCTGTGGTGCCAGGCGGTCCAGCTCATAAGTGTTTGGAGCCAGGTGATGTTCTTGTTTGCATGAATGGGGAAGTAATTACCCAATTTCTAAAAATGGAGACATTACTTGATGATAGTGTGAATCAAAAAATTGAAATACAGATCGAAAGGGGTGGCACACCATTAACTGTGAACTTGCTGGTGCAGGATTTGCACTCAATAACCCCTAATTACTTCTTAGAAGTAAGTGGTGCAGTGATACACCCCCTCTCGTATCAACAGGCTAGAAATTTTCGCTTCCAGTGTGGCCTTGTGTATGTGGCAGAGCCAGGATATATGCTCTTTAGAGCTGGAGTTCCTCGTCATTCTATCATTAAGAAGTTTGCTGGTCAGGAAATATCACTACTTGAGGATCTAATTTCAGTGCTATGCAAGCTATCTCGGGGTGCTCGAGTGCCGTTAGAGTATATAAGCTATGCAGATCGTCATCGGAGGAAGTCAGTCCTGGTCACCGTTGATCGCCATGAATGGTATGCCCCTCCGCAGATATACACTCGTGATGATAGTACTGGTCTTTGGACTGTGAAGCCTGCTTTTCAGCCTGATGCTGGTCTACTTTCATCTGGAATCAATGATCTTGGTGGTATAAGAAGTGATGCAGTTCCTCTATGTACTGAGGCCTCTTCTGTTGGGCACATGCATCGTAATAGCCATGCAGAATTGAATGAAGGGGTCACCAGTATGGAAACCAGTTATGAACATTCTTCTGAAGGAGGACATCCTCGGGCTGAATCTGATGTTGAAACAAAGAAACGCCGAGTGAAGGATTTTTCTTCTGATGGAAATGTCATAGCCGACGGTTCCTTTCTTGAAACAGATGAAGGTGATCCGGAGGATGCAAATACTGTGGAGAATTCTGTTATGAGAGATCTTCAAGGTGAAAATGTAGCAGCAGCTAATTCTTCACTAGCTGAATGTATTATCGAGCCAACTCTTGTTATGCTTGAGGTTCATGTGCCACCATCATGTATGCTCGATGGTGTACATTCACAACATTTTTGGGACTGGTGTTATTATATACCACTCTCAAAATATGGGACTGATTGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0010109 GO:0010205 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0042548 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_1 PDZ_2 Trypsin_2

Protein Analysis

669

Amino Acids

73.79

Weight (kDa)

5.31

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin_2	PF13365	73 - 219	4e-21	Trypsin-like peptidase domain
PDZ_2	PF13180	298 - 366	2.1e-06	PDZ domain
PDZ_6	PF17820	304 - 356	1.1e-07	PDZ domain
PDZ_1	PF12812	372 - 445	7.9e-15	PDZ-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03380 AT3G03380
fragaria_vesca	FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890
malus_domestica	MD17G1256700.v1.1
prunus_persica	Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1
pyrus_communis	pycom17g25890
rosa_chinensis	RchiOBHm_Chr7g0220101
rosa_laevigata	RLG00000002258
rosa_multiflora	Rmu_sc0007553.1_g000006 Rmu_sc0018981.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239790
rosa_rugosa	Rorug07G0188800 Rorug07G0188900 Rorug07G0188900 Rorug07G0189000
rosa_samantha	Rh7AG332500 Rh7BG322400 Rh7CG350000 Rh7DG328200
rosa_wichuraiana	Rw7G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	596
AccB1I	GGYRCC	2 cut(s)	596, 925
AccI	GTMKAC	1 cut(s)	1510
AccII	CGCG	2 cut(s)	246, 318
AccIII	TCCGGA	1 cut(s)	1786
AclWI	GGATC	8 cut(s)	2, 52, 257, 344, 357, 377, 1317, 1778
AcsI	RAATTY	2 cut(s)	1186, 1810
AcuI	CTGAAG	5 cut(s)	74, 216, 425, 782, 1686
AcyI	GRCGYC	1 cut(s)	36
AdeI	CACNNNGTG	1 cut(s)	177
AfaI	GTAC	6 cut(s)	508, 598, 793, 1465, 1570, 1941
AfiI	CCNNNNNNNGG	4 cut(s)	120, 606, 1505, 1720
AjnI	CCWGG	6 cut(s)	280, 385, 928, 958, 1225, 1401
AluBI	AGCT	9 cut(s)	213, 302, 587, 941, 1247, 1333, 1371, 1853, 1868
AluI	AGCT	9 cut(s)	213, 302, 587, 941, 1247, 1333, 1371, 1853, 1868
Alw21I	GWGCWC	1 cut(s)	1348
Alw26I	GTCTC	5 cut(s)	13, 496, 824, 851, 1010
AlwI	GGATC	8 cut(s)	2, 52, 257, 344, 357, 377, 1317, 1778
AlwNI	CAGNNNCTG	1 cut(s)	403
Ama87I	CYCGRG	3 cut(s)	1338, 1347, 1680
Aor13HI	TCCGGA	1 cut(s)	1786
AoxI	GGCC	2 cut(s)	1204, 1575
ApeKI	GCWGC	4 cut(s)	437, 587, 1847, 1850
ApoI	RAATTY	2 cut(s)	1186, 1810
ArsI	GACNNNNNNTTYG	2 cut(s)	831, 863
Asp700I	GAANNNNTTC	2 cut(s)	324, 417
Asp718I	GGTACC	1 cut(s)	596
AspLEI	GCGC	2 cut(s)	133, 243
AspS9I	GGNCC	3 cut(s)	168, 284, 935
AsuHPI	GGTGA	8 cut(s)	250, 494, 905, 974, 1399, 1624, 1793, 1847
AsuII	TTCGAA	1 cut(s)	850
AsuNHI	GCTAGC	1 cut(s)	209
AvaI	CYCGRG	3 cut(s)	1338, 1347, 1680
AvaII	GGWCC	3 cut(s)	168, 284, 935
AxyI	CCTNAGG	1 cut(s)	432
BaeGI	GKGCMC	1 cut(s)	1593
BamHI	GGATCC	1 cut(s)	349
BanI	GGYRCC	2 cut(s)	596, 925
BauI	CACGAG	1 cut(s)	1452
BbsI	GAAGAC	1 cut(s)	839
Bbv12I	GWGCWC	1 cut(s)	1348
BbvCI	CCTCAGC	1 cut(s)	685
BbvI	GCAGC	4 cut(s)	424, 574, 1859, 1862
BccI	CCATC	4 cut(s)	545, 1730, 1927, 1928
BceAI	ACGGC	4 cut(s)	137, 189, 851, 1339
BcgI	CGANNNNNNTGC	6 cut(s)	61, 95, 854, 888, 1580, 1614
BciT130I	CCWGG	6 cut(s)	282, 387, 930, 960, 1227, 1403
BcoDI	GTCTC	5 cut(s)	13, 496, 824, 851, 1010
BfaI	CTAG	5 cut(s)	210, 612, 638, 1182, 1865
BfmI	CTRYAG	1 cut(s)	343
BfoI	RGCGCY	2 cut(s)	134, 244
BglI	GCCNNNNNGGC	1 cut(s)	434
BglII	AGATCT	1 cut(s)	1825
BisI	GCNGC	6 cut(s)	201, 244, 438, 588, 1848, 1851
BlsI	GCNGC	6 cut(s)	202, 245, 439, 589, 1849, 1852
BmcAI	AGTACT	1 cut(s)	1465
Bme1390I	CCNGG	6 cut(s)	282, 387, 930, 960, 1227, 1403
Bme18I	GGWCC	3 cut(s)	168, 284, 935
BmeT110I	CYCGRG	3 cut(s)	1338, 1347, 1680
BmgT120I	GGNCC	3 cut(s)	168, 284, 935
BmiI	GGNNCC	5 cut(s)	351, 598, 927, 957, 1759
BmrFI	CCNGG	6 cut(s)	282, 387, 930, 960, 1227, 1403
BmsI	GCATC	7 cut(s)	520, 599, 890, 1492, 1543, 1606, 1783
BmtI	GCTAGC	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	839
BplI	GAGNNNNNCTC	2 cut(s)	476, 508
BpmI	CTGGAG	3 cut(s)	35, 606, 1269
Bpu10I	CCTNAGC	1 cut(s)	685
Bpu14I	TTCGAA	1 cut(s)	850
BpuEI	CTTGAG	2 cut(s)	1325, 1922
BsaBI	GATNNNNATC	1 cut(s)	1383
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	5 cut(s)	114, 138, 171, 244, 1679
BsaWI	WCCGGW	2 cut(s)	352, 1786
Bsc4I	CCNNNNNNNGG	4 cut(s)	120, 606, 1505, 1720
Bse118I	RCCGGY	2 cut(s)	203, 221
Bse1I	ACTGG	9 cut(s)	125, 329, 623, 904, 1198, 1471, 1635, 1647, 1967
Bse21I	CCTNAGG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	1383
BseAI	TCCGGA	1 cut(s)	1786
BseBI	CCWGG	6 cut(s)	282, 387, 930, 960, 1227, 1403
BseDI	CCNNGG	5 cut(s)	114, 138, 171, 244, 1679
BseGI	GGATG	4 cut(s)	252, 556, 1675, 1798
BseJI	GATNNNNATC	1 cut(s)	1383
BseLI	CCNNNNNNNGG	4 cut(s)	120, 606, 1505, 1720
BseMII	CTCAG	3 cut(s)	423, 699, 1563
BseNI	ACTGG	9 cut(s)	125, 329, 623, 904, 1198, 1471, 1635, 1647, 1967
BseSI	GKGCMC	1 cut(s)	1593
BseXI	GCAGC	4 cut(s)	424, 574, 1859, 1862
BsgI	GTGCAG	2 cut(s)	1121, 1170
Bsh1236I	CGCG	2 cut(s)	246, 318
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	1206, 1577
BshNI	GGYRCC	2 cut(s)	596, 925
BsiEI	CGRYCG	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	1348
BsiHKCI	CYCGRG	3 cut(s)	1338, 1347, 1680
BsiSI	CCGG	4 cut(s)	204, 222, 353, 1787
BslFI	GGGAC	2 cut(s)	131, 1973
BslI	CCNNNNNNNGG	4 cut(s)	120, 606, 1505, 1720
BsmAI	GTCTC	5 cut(s)	13, 496, 824, 851, 1010
BsmBI	CGTCTC	1 cut(s)	851
BsmFI	GGGAC	2 cut(s)	131, 1973
BsmI	GAATGC	2 cut(s)	664, 909
BsnI	GGCC	2 cut(s)	1206, 1577
Bso31I	GGTCTC	1 cut(s)	496
BsoBI	CYCGRG	3 cut(s)	1338, 1347, 1680
Bsp119I	TTCGAA	1 cut(s)	850
Bsp1286I	GDGCHC	2 cut(s)	1348, 1593
Bsp13I	TCCGGA	1 cut(s)	1786
Bsp1407I	TGTACA	1 cut(s)	1939
Bsp68I	TCGCGA	1 cut(s)	318
BspANI	GGCC	2 cut(s)	1206, 1577
BspCNI	CTCAG	3 cut(s)	424, 698, 1564
BspEI	TCCGGA	1 cut(s)	1786
BspFNI	CGCG	2 cut(s)	246, 318
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	5 cut(s)	351, 598, 927, 957, 1759
BspOI	GCTAGC	1 cut(s)	213
BspPI	GGATC	8 cut(s)	2, 52, 257, 344, 357, 377, 1317, 1778
BspT104I	TTCGAA	1 cut(s)	850
BspT107I	GGYRCC	2 cut(s)	596, 925
BspTNI	GGTCTC	1 cut(s)	496
BsrFI	RCCGGY	2 cut(s)	203, 221
BsrGI	TGTACA	1 cut(s)	1939
BsrI	ACTGG	9 cut(s)	125, 329, 623, 904, 1198, 1471, 1635, 1647, 1967
BssAI	RCCGGY	2 cut(s)	203, 221
BssECI	CCNNGG	5 cut(s)	114, 138, 171, 244, 1679
BssNI	GRCGYC	1 cut(s)	36
BssSI	CACGAG	1 cut(s)	1452
BssT1I	CCWWGG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	1452
Bst2UI	CCWGG	6 cut(s)	282, 387, 930, 960, 1227, 1403
Bst4CI	ACNGT	6 cut(s)	399, 1087, 1411, 1480, 1757, 1804
Bst6I	CTCTTC	2 cut(s)	408, 1585
BstACI	GRCGYC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	1108
BstAUI	TGTACA	1 cut(s)	1939
BstBI	TTCGAA	1 cut(s)	850
BstC8I	GCNNGC	5 cut(s)	135, 211, 585, 1331, 1488
BstDEI	CTNAG	4 cut(s)	432, 685, 1135, 1572
BstDSI	CCRYGG	2 cut(s)	171, 244
BstEII	GGTNACC	2 cut(s)	1405, 1630
BstF5I	GGATG	4 cut(s)	252, 556, 1675, 1798
BstFNI	CGCG	2 cut(s)	246, 318
BstH2I	RGCGCY	2 cut(s)	134, 244
BstHHI	GCGC	2 cut(s)	133, 243
BstMAI	GTCTC	5 cut(s)	13, 496, 824, 851, 1010
BstMCI	CGRYCG	1 cut(s)	114
BstMWI	GCNNNNNNNGC	9 cut(s)	130, 182, 206, 215, 434, 659, 793, 1108, 1330
BstNI	CCWGG	6 cut(s)	282, 387, 930, 960, 1227, 1403
BstNSI	RCATGY	3 cut(s)	583, 881, 1597
BstPI	GGTNACC	2 cut(s)	1405, 1630
BstSCI	CCNGG	6 cut(s)	280, 385, 928, 958, 1225, 1401
BstSFI	CTRYAG	1 cut(s)	343
BstSLI	GKGCMC	1 cut(s)	1593
BstUI	CGCG	2 cut(s)	246, 318
BstV1I	GCAGC	4 cut(s)	424, 574, 1859, 1862
BstV2I	GAAGAC	1 cut(s)	839
BstX2I	RGATCY	3 cut(s)	349, 1309, 1825
BstYI	RGATCY	3 cut(s)	349, 1309, 1825
Bsu36I	CCTNAGG	1 cut(s)	432
BsuRI	GGCC	2 cut(s)	1206, 1577
BtgI	CCRYGG	2 cut(s)	171, 244
BtsCI	GGATG	4 cut(s)	252, 556, 1675, 1798
BtsI	GCAGTG	1 cut(s)	1158
BtsIMutI	CAGTG	4 cut(s)	630, 1158, 1205, 1326
BtuMI	TCGCGA	1 cut(s)	318
Cac8I	GCNNGC	5 cut(s)	135, 211, 585, 1331, 1488
CaiI	CAGNNNCTG	1 cut(s)	403
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	2 cut(s)	133, 243
Cfr10I	RCCGGY	2 cut(s)	203, 221
Cfr13I	GGNCC	3 cut(s)	168, 284, 935
Cfr42I	CCGCGG	1 cut(s)	247
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	6 cut(s)	507, 597, 792, 1464, 1569, 1940
CspCI	CAANNNNNGTGG	4 cut(s)	208, 243, 1785, 1820
CviQI	GTAC	6 cut(s)	507, 597, 792, 1464, 1569, 1940
DdeI	CTNAG	4 cut(s)	432, 685, 1135, 1572
DraIII	CACNNNGTG	1 cut(s)	177
Eam1104I	CTCTTC	2 cut(s)	408, 1585
EarI	CTCTTC	2 cut(s)	408, 1585
EciI	GGCGGA	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	1577
Eco31I	GGTCTC	1 cut(s)	496
Eco47I	GGWCC	3 cut(s)	168, 284, 935
Eco57I	CTGAAG	5 cut(s)	74, 216, 425, 782, 1686
Eco81I	CCTNAGG	1 cut(s)	432
Eco88I	CYCGRG	3 cut(s)	1338, 1347, 1680
Eco91I	GGTNACC	2 cut(s)	1405, 1630
EcoO65I	GGTNACC	2 cut(s)	1405, 1630
EcoRI	GAATTC	1 cut(s)	1810
EcoRII	CCWGG	6 cut(s)	280, 385, 928, 958, 1225, 1401
EcoT14I	CCWWGG	1 cut(s)	138
EcoT22I	ATGCAT	2 cut(s)	883, 1599
ErhI	CCWWGG	1 cut(s)	138
Esp3I	CGTCTC	1 cut(s)	851
FaqI	GGGAC	2 cut(s)	131, 1973
FauI	CCCGC	3 cut(s)	93, 157, 239
FblI	GTMKAC	1 cut(s)	1510
Fnu4HI	GCNGC	6 cut(s)	201, 244, 438, 588, 1848, 1851
FokI	GGATG	4 cut(s)	239, 563, 1662, 1805
Fsp4HI	GCNGC	6 cut(s)	201, 244, 438, 588, 1848, 1851
FspBI	CTAG	5 cut(s)	210, 612, 638, 1182, 1865
GlaI	GCGC	2 cut(s)	132, 242
GluI	GCNGC	6 cut(s)	201, 244, 438, 588, 1848, 1851
GsuI	CTGGAG	3 cut(s)	35, 606, 1269
HaeII	RGCGCY	2 cut(s)	134, 244
HaeIII	GGCC	2 cut(s)	1206, 1577
HapII	CCGG	4 cut(s)	204, 222, 353, 1787
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	2 cut(s)	133, 243
Hin1I	GRCGYC	1 cut(s)	36
Hin6I	GCGC	2 cut(s)	131, 241
HinP1I	GCGC	2 cut(s)	131, 241
HinfI	GANTC	8 cut(s)	26, 313, 418, 749, 917, 1039, 1524, 1688
HpaII	CCGG	4 cut(s)	204, 222, 353, 1787
HphI	GGTGA	8 cut(s)	250, 494, 905, 974, 1399, 1624, 1793, 1847
Hpy166II	GTNNAC	4 cut(s)	814, 1090, 1511, 1940
Hpy188I	TCNGA	7 cut(s)	31, 95, 405, 1389, 1666, 1693, 1735
Hpy188III	TCNNGA	8 cut(s)	14, 317, 359, 1289, 1454, 1521, 1766, 1787
Hpy8I	GTNNAC	4 cut(s)	814, 1090, 1511, 1940
Hpy99I	CGWCG	5 cut(s)	65, 158, 161, 236, 1757
HpyAV	CCTTC	8 cut(s)	49, 121, 196, 481, 1619, 1661, 1714, 1772
HpyCH4III	ACNGT	6 cut(s)	399, 1087, 1411, 1480, 1757, 1804
HpyF10VI	GCNNNNNNNGC	9 cut(s)	130, 182, 206, 215, 434, 659, 793, 1108, 1330
HpyF3I	CTNAG	4 cut(s)	432, 685, 1135, 1572
Hsp92I	GRCGYC	1 cut(s)	36
HspAI	GCGC	2 cut(s)	131, 241
Kpn2I	TCCGGA	1 cut(s)	1786
KpnI	GGTACC	1 cut(s)	600
KspI	CCGCGG	1 cut(s)	247
LmnI	GCTCC	3 cut(s)	538, 862, 955
Lsp1109I	GCAGC	4 cut(s)	424, 574, 1859, 1862
LweI	GCATC	7 cut(s)	520, 599, 890, 1492, 1543, 1606, 1783
MaeI	CTAG	5 cut(s)	210, 612, 638, 1182, 1865
MaeIII	GTNAC	4 cut(s)	470, 802, 1405, 1630
MboII	GAAGA	8 cut(s)	332, 425, 839, 1572, 1653, 1722, 1820, 1851
MflI	RGATCY	3 cut(s)	349, 1309, 1825
MhlI	GDGCHC	2 cut(s)	1348, 1593
MluCI	AATT	9 cut(s)	993, 1001, 1047, 1126, 1186, 1314, 1616, 1810, 1855
MmeI	TCCRAC	1 cut(s)	427
Mph1103I	ATGCAT	2 cut(s)	883, 1599
MroI	TCCGGA	1 cut(s)	1786
MroXI	GAANNNNTTC	2 cut(s)	324, 417
MseI	TTAA	2 cut(s)	1082, 1272
MslI	CAYNNNNRTG	2 cut(s)	1637, 1921
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	4 cut(s)	204, 222, 353, 1787
MspR9I	CCNGG	6 cut(s)	282, 387, 930, 960, 1227, 1403
Mva1269I	GAATGC	2 cut(s)	664, 909
MvaI	CCWGG	6 cut(s)	282, 387, 930, 960, 1227, 1403
MvnI	CGCG	2 cut(s)	246, 318
MwoI	GCNNNNNNNGC	9 cut(s)	130, 182, 206, 215, 434, 659, 793, 1108, 1330
NheI	GCTAGC	1 cut(s)	209
NlaIV	GGNNCC	5 cut(s)	351, 598, 927, 957, 1759
NmeAIII	GCCGAG	1 cut(s)	1739
NmuCI	GTSAC	2 cut(s)	1405, 1630
NruI	TCGCGA	1 cut(s)	318
NsiI	ATGCAT	2 cut(s)	883, 1599
NspI	RCATGY	3 cut(s)	583, 881, 1597
NspV	TTCGAA	1 cut(s)	850
PaeR7I	CTCGAG	1 cut(s)	1347
PagI	TCATGA	1 cut(s)	358
PceI	AGGCCT	1 cut(s)	1577
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 1345
PctI	GAATGC	2 cut(s)	664, 909
PdmI	GAANNNNTTC	2 cut(s)	324, 417
PfeI	GAWTC	8 cut(s)	26, 313, 418, 749, 917, 1039, 1524, 1688
PflFI	GACNNNGTC	1 cut(s)	843
PkrI	GCNGC	6 cut(s)	202, 245, 439, 589, 1849, 1852
Psp6I	CCWGG	6 cut(s)	280, 385, 928, 958, 1225, 1401
PspEI	GGTNACC	2 cut(s)	1405, 1630
PspGI	CCWGG	6 cut(s)	280, 385, 928, 958, 1225, 1401
PspN4I	GGNNCC	5 cut(s)	351, 598, 927, 957, 1759
PspPI	GGNCC	3 cut(s)	168, 284, 935
PspXI	VCTCGAGB	1 cut(s)	1347
PstNI	CAGNNNCTG	1 cut(s)	403
PsuI	RGATCY	3 cut(s)	349, 1309, 1825
PsyI	GACNNNGTC	1 cut(s)	843
RruI	TCGCGA	1 cut(s)	318
RsaI	GTAC	6 cut(s)	508, 598, 793, 1465, 1570, 1941
RsaNI	GTAC	6 cut(s)	507, 597, 792, 1464, 1569, 1940
RseI	CAYNNNNRTG	2 cut(s)	1637, 1921
SacII	CCGCGG	1 cut(s)	247
SaqAI	TTAA	2 cut(s)	1082, 1272
SatI	GCNGC	6 cut(s)	201, 244, 438, 588, 1848, 1851
Sau96I	GGNCC	3 cut(s)	168, 284, 935
ScaI	AGTACT	1 cut(s)	1465
ScrFI	CCNGG	6 cut(s)	282, 387, 930, 960, 1227, 1403
SduI	GDGCHC	2 cut(s)	1348, 1593
SfaNI	GCATC	7 cut(s)	520, 599, 890, 1492, 1543, 1606, 1783
SfcI	CTRYAG	1 cut(s)	343
Sfr274I	CTCGAG	1 cut(s)	1347
Sfr303I	CCGCGG	1 cut(s)	247
SfuI	TTCGAA	1 cut(s)	850
SgrAI	CRCCGGYG	1 cut(s)	203
SgrBI	CCGCGG	1 cut(s)	247
SinI	GGWCC	3 cut(s)	168, 284, 935
SlaI	CTCGAG	1 cut(s)	1347
SmiMI	CAYNNNNRTG	2 cut(s)	1637, 1921
SmlI	CTYRAG	3 cut(s)	1304, 1347, 1901
SmoI	CTYRAG	3 cut(s)	1304, 1347, 1901
Sse9I	AATT	9 cut(s)	993, 1001, 1047, 1126, 1186, 1314, 1616, 1810, 1855
SseBI	AGGCCT	1 cut(s)	1577
SspMI	CTAG	5 cut(s)	210, 612, 638, 1182, 1865
StuI	AGGCCT	1 cut(s)	1577
StyD4I	CCNGG	6 cut(s)	280, 385, 928, 958, 1225, 1401
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	6 cut(s)	399, 1087, 1411, 1480, 1757, 1804
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	9 cut(s)	993, 1001, 1047, 1126, 1186, 1314, 1616, 1810, 1855
TatI	WGTACW	3 cut(s)	1463, 1568, 1939
TauI	GCSGC	2 cut(s)	203, 246
TfiI	GAWTC	8 cut(s)	26, 313, 418, 749, 917, 1039, 1524, 1688
Tru1I	TTAA	2 cut(s)	1082, 1272
Tru9I	TTAA	2 cut(s)	1082, 1272
TscAI	CASTG	4 cut(s)	630, 1158, 1205, 1326
TseFI	GTSAC	2 cut(s)	1405, 1630
TseI	GCWGC	4 cut(s)	437, 587, 1847, 1850
Tsp45I	GTSAC	2 cut(s)	1405, 1630
TspDTI	ATGAA	9 cut(s)	347, 426, 995, 1437, 1506, 1638, 1668, 1791, 1898
TspGWI	ACGGA	1 cut(s)	875
TspRI	CASTG	4 cut(s)	630, 1158, 1205, 1326
Tth111I	GACNNNGTC	1 cut(s)	843
VpaK11BI	GGWCC	3 cut(s)	168, 284, 935
XapI	RAATTY	2 cut(s)	1186, 1810
XceI	RCATGY	3 cut(s)	583, 881, 1597
XcmI	CCANNNNNNNNNTGG	1 cut(s)	630
XhoI	CTCGAG	1 cut(s)	1347
XmiI	GTMKAC	1 cut(s)	1510
XmnI	GAANNNNTTC	2 cut(s)	324, 417
XspI	CTAG	5 cut(s)	210, 612, 638, 1182, 1865
ZrmI	AGTACT	1 cut(s)	1465
Zsp2I	ATGCAT	2 cut(s)	883, 1599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.