Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004820

Physical Location & Seq

Genomic Coordinates Reverse (-)

30813943 .. 30830258

Gene Structure 16316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002258

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2349 bp

ATGGCCGATCCTCTGGAGAGACTTGAACCAGAGGACGCCGGAGGATCGAGCCTGAAGGACGACGAACTCTGCATGGAGATCGACCCGCCTTTCAGAGAAAGCACCGCCACCACCGAGGACTGGCGGAAGGCGCTTGCCAAGGTCGTCCCCGCCGTCGTCGTTTTGAGGACCACGGCGTGTCGTGCCTTCGATACTGAAGCTGCCGGTGCTAGCTATGCCACTGGCTTTGTCATCGATAAGCGCCGTGGGATCATCCTCACCAACCGCCATGTTGTCAAGCCTGGACCTGTGGTTGCGGAAGCTATGTTTGTGAATCGCGAAGAAGTTCCAGTATATCCTATCTATAGGGATCCGGTTCATGATTTTGGCTTCTTTTGTTATGATCCTGGTGCAATACAGTTTCTGAAGTATGAAGAGATTCCTCTTGCCCCTGAGGCTGCTTCTGTTGGATTAGAAATCAGGGTTGTTGGTAACGATAGTGGTGAGAAGGTCTCCATTTTGGCTGGTACTCTTGCTCGTTTAGATAGAGATGCTCCTTATTACAAAAAGGATGGCTATAATGATTTCAATACATTCTACATGCAAGCTGCATCTGGTACCAAAGGTGGGTCTAGTGGCTCTCCGGTGATTGATTGGCTAGGTAGGGCGGTGGCTTTGAATGCTGGTAGCAAGTCATCAAGTGCATCAGCATTTTTTTTACCATTGGAACGAGTTGTGAGGGCATTGAAGTTTCTCCAAAATGGCAGAGATTCTTTTGTCAAAAAATGGGAGGCAGTTTCTATACTGCGTGGTACGCTTCAGGTAACTTTTGTCCACAAAGGATTTGATGAGACACGGCGACTTGGTCTTCGAAGTGAGACGGAGCAGAGGGTTCGACATGCGTCTCCGCAGGGTGAAACTGGAATGCTTGTTGTTGAATCTGTGGTGCCAGGTGGTCCAGCTCATAAGTGTTTGGAGCCAGGTGATGTTCTTGTTTGCATGAATGGGGAAGTAATTACCCAATTTCTAAAAATGGAGACATTACTTGATGATAGTGTGAATCAAAAAATTGAAATACAGATCGAAAGGGGTGGCACACCATTAACTGTGAACTTGCTGGTGCAGGATTTGCACACGATAACCCCTAATTACTTCTTAGAAGTAAGTGGTGCAGTGATACACCCTCTCTCGTATCAACAGGCTAGAAATTTTCGCTTCCAGTGTGGCCTTGTGTATGTGGCAGAGCCAGGATATATGCTCTTTAGAGCTGGAGTTCCTCGTCATGCTATCATTAAGAAGTTTGCTGGTCAGGAAATATCACTACTTGAGGATCTAATTTCAGTGCTATGCAAGCTATCTCGGGGTGCTCGAGTGCCGTTAGAGTATATAAGCTATGCAGATCGTCATCGGAGGAAGTCAGTCCTGGTCACCGTTGATCGCCATGAGTGGTATGCCCCTCCACAGATATACACTCGTGATGATAGTACTGGTCTTTGGACTGTGAAGCCTGCTTTTCAGCCTGATGCTGGTCTACTTTCATCTGGTATCAATGATCTTGGTGGTATGAGAAGTGATGCAGTTCCTCTATGTACTGAGGCCTCTTCTGTTGGGCACATGCATCATAATAGCCGTGCAGAATTGAATGAAGGGGTCACCAGTATGGAAACCAGTTATGAACATTCTTCTGAAGGAGGACATCCTCGGGCTAAATCTGATGTTGAAACAAAGAAACGCCGAGTGAAGAAGGATTTTTCTTCTGATGGAAATGTTGTAGCCGATGGTTCCTTTCTTGAAACAGATGAAGGTGATCCGGAGGATGCAAATACTGTGGAGAATTCTGTTATGAGAGATCTTCAAGGTGAAAATGTAGCAGCAGCTAATTCTTCACTAGCTGAACGTATTATCGAGCCAACTCTTGTTATGCTTGAGGTTCATGTGCCACCATCATGTATGCTCGATGGTGTACATTCACAACATTTTTTTGGGACTGGTGTTATTATATACCACTCTCAAAACATGGGACTGATTGCTGTTGACAAGAATACAGTTGTGGTATCTGCATCTGATGTGATGCTCTCATTCGCCGCATTTCCAATTGAAATTCCAGGGGAGGTGGTTTTTCTCCATCCCGTTCACAATTATGCTCTCATTTCATATGATCCATTGGCCCTGGGCGCTGTTGGTATCTCGCTTGTTCGTGCTGCGAAACTACTTCCTGGTAGGTTTAACTTTTCATTTCATTTGATTCCACTGTTTTTCCCTGTTGGTTTACATGCTGTGCATGTGAAATGCGTCCTATACAAATTAGTTTATTGTTATTTTAAAGAAAAAGGTATGTGTTTTTGGTGGTTAGTTTCTTTAAATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0010109 GO:0010205 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0042548 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_1 PDZ_2 Trypsin_2

Protein Analysis

783

Amino Acids

86.14

Weight (kDa)

5.82

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin_2	PF13365	73 - 219	7.1e-21	Trypsin-like peptidase domain
PDZ_2	PF13180	298 - 366	2.6e-06	PDZ domain
PDZ_6	PF17820	304 - 356	1.4e-07	PDZ domain
PDZ_1	PF12812	373 - 445	1.4e-14	PDZ-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03380 AT3G03380
fragaria_vesca	FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890
malus_domestica	MD17G1256700.v1.1
prunus_persica	Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1
pyrus_communis	pycom17g25890
rosa_chinensis	RchiOBHm_Chr7g0220101
rosa_laevigata	RLG00000002258
rosa_multiflora	Rmu_sc0007553.1_g000006 Rmu_sc0018981.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239790
rosa_rugosa	Rorug07G0188800 Rorug07G0188900 Rorug07G0188900 Rorug07G0189000
rosa_samantha	Rh7AG332500 Rh7BG322400 Rh7CG350000 Rh7DG328200
rosa_wichuraiana	Rw7G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	596
AccB1I	GGYRCC	2 cut(s)	596, 925
AccI	GTMKAC	1 cut(s)	1510
AccII	CGCG	1 cut(s)	318
AccIII	TCCGGA	1 cut(s)	1789
AciI	CCGC	9 cut(s)	86, 105, 124, 150, 265, 296, 647, 887, 2064
AclWI	GGATC	9 cut(s)	2, 52, 257, 344, 357, 377, 1317, 1781, 2132
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	1186, 1813, 2079, 2341
AcuI	CTGAAG	5 cut(s)	74, 216, 425, 782, 1686
AcyI	GRCGYC	1 cut(s)	36
AdeI	CACNNNGTG	1 cut(s)	177
AfaI	GTAC	6 cut(s)	508, 598, 793, 1465, 1570, 1944
AfiI	CCNNNNNNNGG	3 cut(s)	120, 606, 1505
AjnI	CCWGG	9 cut(s)	280, 385, 928, 958, 1225, 1401, 2083, 2148, 2194
Alw21I	GWGCWC	1 cut(s)	1348
Alw26I	GTCTC	6 cut(s)	13, 496, 824, 851, 888, 1010
AlwI	GGATC	9 cut(s)	2, 52, 257, 344, 357, 377, 1317, 1781, 2132
AlwNI	CAGNNNCTG	1 cut(s)	403
Ama87I	CYCGRG	3 cut(s)	1338, 1347, 1680
Aor13HI	TCCGGA	1 cut(s)	1789
AoxI	GGCC	4 cut(s)	3, 1204, 1575, 2145
ApeKI	GCWGC	6 cut(s)	200, 437, 587, 1850, 1853, 2180
ApoI	RAATTY	4 cut(s)	1186, 1813, 2079, 2341
ArsI	GACNNNNNNTTYG	2 cut(s)	831, 863
Asp700I	GAANNNNTTC	2 cut(s)	324, 417
Asp718I	GGTACC	1 cut(s)	596
AspLEI	GCGC	3 cut(s)	133, 243, 2156
AspS9I	GGNCC	4 cut(s)	168, 284, 935, 2146
AsuHPI	GGTGA	9 cut(s)	250, 494, 637, 905, 974, 1399, 1624, 1796, 1850
AsuII	TTCGAA	1 cut(s)	850
AsuNHI	GCTAGC	1 cut(s)	209
AvaI	CYCGRG	3 cut(s)	1338, 1347, 1680
AvaII	GGWCC	3 cut(s)	168, 284, 935
AxyI	CCTNAGG	1 cut(s)	432
BaeGI	GKGCMC	1 cut(s)	1593
BamHI	GGATCC	1 cut(s)	349
BanI	GGYRCC	2 cut(s)	596, 925
BauI	CACGAG	1 cut(s)	1452
BbsI	GAAGAC	1 cut(s)	839
Bbv12I	GWGCWC	1 cut(s)	1348
BbvI	GCAGC	6 cut(s)	187, 424, 574, 1862, 1865, 2167
BccI	CCATC	6 cut(s)	545, 1733, 1751, 1930, 1931, 2112
BceAI	ACGGC	6 cut(s)	137, 189, 228, 851, 1339, 1593
BcgI	CGANNNNNNTGC	4 cut(s)	61, 95, 854, 888
BciT130I	CCWGG	9 cut(s)	282, 387, 930, 960, 1227, 1403, 2085, 2150, 2196
BcoDI	GTCTC	6 cut(s)	13, 496, 824, 851, 888, 1010
BfaI	CTAG	5 cut(s)	210, 612, 638, 1182, 1868
BfmI	CTRYAG	1 cut(s)	343
BfoI	RGCGCY	3 cut(s)	134, 244, 2157
BglI	GCCNNNNNGGC	1 cut(s)	434
BglII	AGATCT	1 cut(s)	1828
BisI	GCNGC	7 cut(s)	201, 438, 588, 1851, 1854, 2064, 2181
BlsI	GCNGC	7 cut(s)	202, 439, 589, 1852, 1855, 2065, 2182
BmcAI	AGTACT	1 cut(s)	1465
Bme1390I	CCNGG	9 cut(s)	282, 387, 930, 960, 1227, 1403, 2085, 2150, 2196
Bme18I	GGWCC	3 cut(s)	168, 284, 935
BmeT110I	CYCGRG	3 cut(s)	1338, 1347, 1680
BmgT120I	GGNCC	4 cut(s)	168, 284, 935, 2146
BmiI	GGNNCC	5 cut(s)	351, 598, 927, 957, 1762
BmrFI	CCNGG	9 cut(s)	282, 387, 930, 960, 1227, 1403, 2085, 2150, 2196
BmsI	GCATC	9 cut(s)	520, 599, 692, 1492, 1543, 1606, 1786, 2040, 2048
BmtI	GCTAGC	1 cut(s)	213
BoxI	GACNNNNGTC	1 cut(s)	880
BpiI	GAAGAC	1 cut(s)	839
BplI	GAGNNNNNCTC	2 cut(s)	476, 508
BpmI	CTGGAG	2 cut(s)	35, 1269
Bpu14I	TTCGAA	1 cut(s)	850
BpuEI	CTTGAG	2 cut(s)	1325, 1925
Bsa29I	ATCGAT	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	1383
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	8 cut(s)	114, 138, 171, 244, 1679, 2084, 2148, 2149
BsaWI	WCCGGW	3 cut(s)	352, 622, 1789
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 606, 1505
Bse118I	RCCGGY	1 cut(s)	203
Bse1I	ACTGG	9 cut(s)	125, 226, 329, 904, 1198, 1471, 1635, 1647, 1972
Bse21I	CCTNAGG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	1383
BseAI	TCCGGA	1 cut(s)	1789
BseBI	CCWGG	9 cut(s)	282, 387, 930, 960, 1227, 1403, 2085, 2150, 2196
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	8 cut(s)	114, 138, 171, 244, 1679, 2084, 2148, 2149
BseGI	GGATG	5 cut(s)	252, 556, 1675, 1801, 2104
BseJI	GATNNNNATC	1 cut(s)	1383
BseLI	CCNNNNNNNGG	3 cut(s)	120, 606, 1505
BseMII	CTCAG	2 cut(s)	423, 1563
BseNI	ACTGG	9 cut(s)	125, 226, 329, 904, 1198, 1471, 1635, 1647, 1972
BseSI	GKGCMC	1 cut(s)	1593
BseXI	GCAGC	6 cut(s)	187, 424, 574, 1862, 1865, 2167
BsgI	GTGCAG	3 cut(s)	1121, 1170, 1632
Bsh1236I	CGCG	1 cut(s)	318
BshFI	GGCC	4 cut(s)	5, 1206, 1577, 2147
BshNI	GGYRCC	2 cut(s)	596, 925
BshVI	ATCGAT	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	1348
BsiHKCI	CYCGRG	3 cut(s)	1338, 1347, 1680
BsiSI	CCGG	5 cut(s)	39, 204, 353, 623, 1790
BslFI	GGGAC	3 cut(s)	131, 1978, 2013
BslI	CCNNNNNNNGG	3 cut(s)	120, 606, 1505
BsmAI	GTCTC	6 cut(s)	13, 496, 824, 851, 888, 1010
BsmBI	CGTCTC	2 cut(s)	851, 888
BsmFI	GGGAC	3 cut(s)	131, 1978, 2013
BsmI	GAATGC	2 cut(s)	664, 909
BsnI	GGCC	4 cut(s)	5, 1206, 1577, 2147
Bso31I	GGTCTC	1 cut(s)	496
BsoBI	CYCGRG	3 cut(s)	1338, 1347, 1680
Bsp119I	TTCGAA	1 cut(s)	850
Bsp1286I	GDGCHC	2 cut(s)	1348, 1593
Bsp13I	TCCGGA	1 cut(s)	1789
Bsp1407I	TGTACA	1 cut(s)	1942
Bsp68I	TCGCGA	1 cut(s)	318
BspACI	CCGC	9 cut(s)	86, 105, 124, 150, 265, 296, 647, 887, 2064
BspANI	GGCC	4 cut(s)	5, 1206, 1577, 2147
BspCNI	CTCAG	2 cut(s)	424, 1564
BspDI	ATCGAT	1 cut(s)	234
BspEI	TCCGGA	1 cut(s)	1789
BspFNI	CGCG	1 cut(s)	318
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	5 cut(s)	351, 598, 927, 957, 1762
BspOI	GCTAGC	1 cut(s)	213
BspPI	GGATC	9 cut(s)	2, 52, 257, 344, 357, 377, 1317, 1781, 2132
BspT104I	TTCGAA	1 cut(s)	850
BspT107I	GGYRCC	2 cut(s)	596, 925
BspTNI	GGTCTC	1 cut(s)	496
BsrFI	RCCGGY	1 cut(s)	203
BsrGI	TGTACA	1 cut(s)	1942
BsrI	ACTGG	9 cut(s)	125, 226, 329, 904, 1198, 1471, 1635, 1647, 1972
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	8 cut(s)	114, 138, 171, 244, 1679, 2084, 2148, 2149
BssNI	GRCGYC	1 cut(s)	36
BssSI	CACGAG	1 cut(s)	1452
BssT1I	CCWWGG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	1452
Bst2UI	CCWGG	9 cut(s)	282, 387, 930, 960, 1227, 1403, 2085, 2150, 2196
Bst4CI	ACNGT	7 cut(s)	399, 1087, 1411, 1480, 1807, 2026, 2232
Bst6I	CTCTTC	2 cut(s)	408, 1585
BstACI	GRCGYC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	1108
BstAUI	TGTACA	1 cut(s)	1942
BstBI	TTCGAA	1 cut(s)	850
BstC8I	GCNNGC	5 cut(s)	135, 211, 585, 1331, 1488
BstDEI	CTNAG	3 cut(s)	432, 1135, 1572
BstDSI	CCRYGG	2 cut(s)	171, 244
BstEII	GGTNACC	2 cut(s)	1405, 1630
BstF5I	GGATG	5 cut(s)	252, 556, 1675, 1801, 2104
BstFNI	CGCG	1 cut(s)	318
BstH2I	RGCGCY	3 cut(s)	134, 244, 2157
BstHHI	GCGC	3 cut(s)	133, 243, 2156
BstMAI	GTCTC	6 cut(s)	13, 496, 824, 851, 888, 1010
BstNI	CCWGG	9 cut(s)	282, 387, 930, 960, 1227, 1403, 2085, 2150, 2196
BstNSI	RCATGY	5 cut(s)	583, 881, 1597, 2255, 2264
BstPAI	GACNNNNGTC	1 cut(s)	880
BstPI	GGTNACC	2 cut(s)	1405, 1630
BstSCI	CCNGG	9 cut(s)	280, 385, 928, 958, 1225, 1401, 2083, 2148, 2194
BstSFI	CTRYAG	1 cut(s)	343
BstSLI	GKGCMC	1 cut(s)	1593
BstUI	CGCG	1 cut(s)	318
BstV1I	GCAGC	6 cut(s)	187, 424, 574, 1862, 1865, 2167
BstV2I	GAAGAC	1 cut(s)	839
BstX2I	RGATCY	3 cut(s)	349, 1309, 1828
BstYI	RGATCY	3 cut(s)	349, 1309, 1828
Bsu15I	ATCGAT	1 cut(s)	234
Bsu36I	CCTNAGG	1 cut(s)	432
BsuRI	GGCC	4 cut(s)	5, 1206, 1577, 2147
BsuTUI	ATCGAT	1 cut(s)	234
BtgI	CCRYGG	2 cut(s)	171, 244
BtsCI	GGATG	5 cut(s)	252, 556, 1675, 1801, 2104
BtsI	GCAGTG	1 cut(s)	1158
BtsIMutI	CAGTG	5 cut(s)	219, 1158, 1205, 1326, 2228
BtuMI	TCGCGA	1 cut(s)	318
Cac8I	GCNNGC	5 cut(s)	135, 211, 585, 1331, 1488
CaiI	CAGNNNCTG	1 cut(s)	403
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	3 cut(s)	133, 243, 2156
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	4 cut(s)	168, 284, 935, 2146
ClaI	ATCGAT	1 cut(s)	234
CseI	GACGC	3 cut(s)	44, 870, 2260
Csp6I	GTAC	6 cut(s)	507, 597, 792, 1464, 1569, 1943
CspCI	CAANNNNNGTGG	4 cut(s)	208, 243, 1788, 1823
CviQI	GTAC	6 cut(s)	507, 597, 792, 1464, 1569, 1943
DdeI	CTNAG	3 cut(s)	432, 1135, 1572
DraI	TTTAAA	2 cut(s)	2302, 2340
DraIII	CACNNNGTG	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	408, 1585
EarI	CTCTTC	2 cut(s)	408, 1585
EciI	GGCGGA	1 cut(s)	139
Eco130I	CCWWGG	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	1577
Eco31I	GGTCTC	1 cut(s)	496
Eco47I	GGWCC	3 cut(s)	168, 284, 935
Eco57I	CTGAAG	5 cut(s)	74, 216, 425, 782, 1686
Eco81I	CCTNAGG	1 cut(s)	432
Eco88I	CYCGRG	3 cut(s)	1338, 1347, 1680
Eco91I	GGTNACC	2 cut(s)	1405, 1630
EcoO65I	GGTNACC	2 cut(s)	1405, 1630
EcoRI	GAATTC	1 cut(s)	1813
EcoRII	CCWGG	9 cut(s)	280, 385, 928, 958, 1225, 1401, 2083, 2148, 2194
EcoT14I	CCWWGG	1 cut(s)	138
EcoT22I	ATGCAT	1 cut(s)	1599
ErhI	CCWWGG	1 cut(s)	138
Esp3I	CGTCTC	2 cut(s)	851, 888
FaqI	GGGAC	3 cut(s)	131, 1978, 2013
FauI	CCCGC	2 cut(s)	93, 157
FauNDI	CATATG	1 cut(s)	2134
FblI	GTMKAC	1 cut(s)	1510
Fnu4HI	GCNGC	7 cut(s)	201, 438, 588, 1851, 1854, 2064, 2181
FokI	GGATG	5 cut(s)	239, 563, 1662, 1808, 2091
Fsp4HI	GCNGC	7 cut(s)	201, 438, 588, 1851, 1854, 2064, 2181
FspBI	CTAG	5 cut(s)	210, 612, 638, 1182, 1868
GlaI	GCGC	3 cut(s)	132, 242, 2155
GluI	GCNGC	7 cut(s)	201, 438, 588, 1851, 1854, 2064, 2181
GsuI	CTGGAG	2 cut(s)	35, 1269
HaeII	RGCGCY	3 cut(s)	134, 244, 2157
HaeIII	GGCC	4 cut(s)	5, 1206, 1577, 2147
HapII	CCGG	5 cut(s)	39, 204, 353, 623, 1790
HgaI	GACGC	3 cut(s)	44, 870, 2260
HhaI	GCGC	3 cut(s)	133, 243, 2156
Hin1I	GRCGYC	1 cut(s)	36
Hin6I	GCGC	3 cut(s)	131, 241, 2154
HinP1I	GCGC	3 cut(s)	131, 241, 2154
HincII	GTYRAC	1 cut(s)	2014
HindII	GTYRAC	1 cut(s)	2014
HinfI	GANTC	6 cut(s)	313, 418, 749, 917, 1039, 2224
HpaII	CCGG	5 cut(s)	39, 204, 353, 623, 1790
HphI	GGTGA	9 cut(s)	250, 494, 637, 905, 974, 1399, 1624, 1796, 1850
Hpy166II	GTNNAC	7 cut(s)	814, 1090, 1511, 1943, 2014, 2113, 2249
Hpy188I	TCNGA	7 cut(s)	95, 405, 1389, 1666, 1693, 1738, 2044
Hpy188III	TCNNGA	7 cut(s)	14, 317, 359, 1289, 1454, 1769, 1790
Hpy8I	GTNNAC	7 cut(s)	814, 1090, 1511, 1943, 2014, 2113, 2249
Hpy99I	CGWCG	3 cut(s)	65, 158, 161
HpyAV	CCTTC	8 cut(s)	49, 121, 196, 481, 1619, 1661, 1717, 1775
HpyCH4III	ACNGT	7 cut(s)	399, 1087, 1411, 1480, 1807, 2026, 2232
HpyCH4IV	ACGT	1 cut(s)	1876
HpyF3I	CTNAG	3 cut(s)	432, 1135, 1572
HpySE526I	ACGT	1 cut(s)	1876
Hsp92I	GRCGYC	1 cut(s)	36
HspAI	GCGC	3 cut(s)	131, 241, 2154
Kpn2I	TCCGGA	1 cut(s)	1789
KpnI	GGTACC	1 cut(s)	600
LmnI	GCTCC	3 cut(s)	538, 862, 955
Lsp1109I	GCAGC	6 cut(s)	187, 424, 574, 1862, 1865, 2167
LweI	GCATC	9 cut(s)	520, 599, 692, 1492, 1543, 1606, 1786, 2040, 2048
MaeI	CTAG	5 cut(s)	210, 612, 638, 1182, 1868
MaeII	ACGT	1 cut(s)	1876
MaeIII	GTNAC	4 cut(s)	470, 802, 1405, 1630
MboII	GAAGA	9 cut(s)	332, 425, 839, 1572, 1653, 1725, 1732, 1823, 1854
MfeI	CAATTG	1 cut(s)	2073
MflI	RGATCY	3 cut(s)	349, 1309, 1828
MhlI	GDGCHC	2 cut(s)	1348, 1593
MmeI	TCCRAC	1 cut(s)	427
Mph1103I	ATGCAT	1 cut(s)	1599
MroI	TCCGGA	1 cut(s)	1789
MroXI	GAANNNNTTC	2 cut(s)	324, 417
MseI	TTAA	5 cut(s)	1082, 1272, 2205, 2301, 2339
MslI	CAYNNNNRTG	3 cut(s)	1637, 1924, 2118
MspI	CCGG	5 cut(s)	39, 204, 353, 623, 1790
MspR9I	CCNGG	9 cut(s)	282, 387, 930, 960, 1227, 1403, 2085, 2150, 2196
MunI	CAATTG	1 cut(s)	2073
Mva1269I	GAATGC	2 cut(s)	664, 909
MvaI	CCWGG	9 cut(s)	282, 387, 930, 960, 1227, 1403, 2085, 2150, 2196
MvnI	CGCG	1 cut(s)	318
NdeI	CATATG	1 cut(s)	2134
NheI	GCTAGC	1 cut(s)	209
NlaIV	GGNNCC	5 cut(s)	351, 598, 927, 957, 1762
NmeAIII	GCCGAG	1 cut(s)	1739
NmuCI	GTSAC	2 cut(s)	1405, 1630
NruI	TCGCGA	1 cut(s)	318
NsiI	ATGCAT	1 cut(s)	1599
NspI	RCATGY	5 cut(s)	583, 881, 1597, 2255, 2264
NspV	TTCGAA	1 cut(s)	850
PaeR7I	CTCGAG	1 cut(s)	1347
PagI	TCATGA	1 cut(s)	358
PasI	CCCWGGG	1 cut(s)	2149
PceI	AGGCCT	1 cut(s)	1577
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 1345
PctI	GAATGC	2 cut(s)	664, 909
PdmI	GAANNNNTTC	2 cut(s)	324, 417
PfeI	GAWTC	6 cut(s)	313, 418, 749, 917, 1039, 2224
PflFI	GACNNNGTC	1 cut(s)	843
PkrI	GCNGC	7 cut(s)	202, 439, 589, 1852, 1855, 2065, 2182
PshAI	GACNNNNGTC	1 cut(s)	880
Psp6I	CCWGG	9 cut(s)	280, 385, 928, 958, 1225, 1401, 2083, 2148, 2194
PspEI	GGTNACC	2 cut(s)	1405, 1630
PspGI	CCWGG	9 cut(s)	280, 385, 928, 958, 1225, 1401, 2083, 2148, 2194
PspN4I	GGNNCC	5 cut(s)	351, 598, 927, 957, 1762
PspPI	GGNCC	4 cut(s)	168, 284, 935, 2146
PspXI	VCTCGAGB	1 cut(s)	1347
PstNI	CAGNNNCTG	1 cut(s)	403
PsuI	RGATCY	3 cut(s)	349, 1309, 1828
PsyI	GACNNNGTC	1 cut(s)	843
RruI	TCGCGA	1 cut(s)	318
RsaI	GTAC	6 cut(s)	508, 598, 793, 1465, 1570, 1944
RsaNI	GTAC	6 cut(s)	507, 597, 792, 1464, 1569, 1943
RseI	CAYNNNNRTG	3 cut(s)	1637, 1924, 2118
SaqAI	TTAA	5 cut(s)	1082, 1272, 2205, 2301, 2339
SatI	GCNGC	7 cut(s)	201, 438, 588, 1851, 1854, 2064, 2181
Sau96I	GGNCC	4 cut(s)	168, 284, 935, 2146
ScaI	AGTACT	1 cut(s)	1465
ScrFI	CCNGG	9 cut(s)	282, 387, 930, 960, 1227, 1403, 2085, 2150, 2196
SduI	GDGCHC	2 cut(s)	1348, 1593
SfaNI	GCATC	9 cut(s)	520, 599, 692, 1492, 1543, 1606, 1786, 2040, 2048
SfcI	CTRYAG	1 cut(s)	343
Sfr274I	CTCGAG	1 cut(s)	1347
SfuI	TTCGAA	1 cut(s)	850
SinI	GGWCC	3 cut(s)	168, 284, 935
SlaI	CTCGAG	1 cut(s)	1347
SmiMI	CAYNNNNRTG	3 cut(s)	1637, 1924, 2118
SmlI	CTYRAG	3 cut(s)	1304, 1347, 1904
SmoI	CTYRAG	3 cut(s)	1304, 1347, 1904
SseBI	AGGCCT	1 cut(s)	1577
SsiI	CCGC	9 cut(s)	86, 105, 124, 150, 265, 296, 647, 887, 2064
SspMI	CTAG	5 cut(s)	210, 612, 638, 1182, 1868
StuI	AGGCCT	1 cut(s)	1577
StyD4I	CCNGG	9 cut(s)	280, 385, 928, 958, 1225, 1401, 2083, 2148, 2194
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	7 cut(s)	399, 1087, 1411, 1480, 1807, 2026, 2232
TaiI	ACGT	1 cut(s)	1879
TatI	WGTACW	3 cut(s)	1463, 1568, 1942
TauI	GCSGC	1 cut(s)	2066
TfiI	GAWTC	6 cut(s)	313, 418, 749, 917, 1039, 2224
Tru1I	TTAA	5 cut(s)	1082, 1272, 2205, 2301, 2339
Tru9I	TTAA	5 cut(s)	1082, 1272, 2205, 2301, 2339
TscAI	CASTG	5 cut(s)	226, 1158, 1205, 1326, 2235
TseFI	GTSAC	2 cut(s)	1405, 1630
TseI	GCWGC	6 cut(s)	200, 437, 587, 1850, 1853, 2180
Tsp45I	GTSAC	2 cut(s)	1405, 1630
TspGWI	ACGGA	1 cut(s)	875
TspRI	CASTG	5 cut(s)	226, 1158, 1205, 1326, 2235
Tth111I	GACNNNGTC	1 cut(s)	843
VpaK11BI	GGWCC	3 cut(s)	168, 284, 935
XapI	RAATTY	4 cut(s)	1186, 1813, 2079, 2341
XceI	RCATGY	5 cut(s)	583, 881, 1597, 2255, 2264
XhoI	CTCGAG	1 cut(s)	1347
XmiI	GTMKAC	1 cut(s)	1510
XmnI	GAANNNNTTC	2 cut(s)	324, 417
XspI	CTAG	5 cut(s)	210, 612, 638, 1182, 1868
ZrmI	AGTACT	1 cut(s)	1465
Zsp2I	ATGCAT	1 cut(s)	1599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.