Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004820

Physical Location & Seq

Genomic Coordinates Forward (+)

38901043 .. 38922656

Gene Structure 21614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19702

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3342 bp

ATGGGCGATCCTCTGGAGAGACTTGAATCAGAGGACGCCGGAGGATCGAGCCTGAAGGACGACGAACTCTGCATGGAGATCGACCCGCCTTTCAGAGAAAGCACCGCCACGACCGAGGACTGGCGGAAGGCGCTTGCCAACGTCGTCCCCGCCGTCGTCGTTTTGAGGACCACGGCGTGTCGTGCCTTCGACACTGAAGCCGCCGGTGCTAGCTATGCCACCGGCTTTGTCGTCGATAAGCGCCGCGGGATCATCCTCACCAACCGCCATGTTGTCAAGCCTGGACCTGTAGTTGCGGAAGCTATGTTTGTGAATCGCGAAGAAGTTCCAGTATATCCTATCTATAGGGATCCGGTTCATGATTTTGGCTTCTTTTGTTATGATCCTGGTGCAATACAGTTTCTGAAGTATGAAGAGATTCCTCTTGCCCCTGAGGCTGCTTCTGTTGGATTAGAAATCAGGGTTGTTGGTAACGATAGTGGTGAGAAGGTCTCCATTTTGGCTGGTACTCTTGCCCGTTTAGATAGAGATGCTCCTTATTACAAAAAGGATGGCTATAATGATTTCAATACATTCTACATGCAAGCTGCATCTGGTACCAAAGGTGGGTCTAGTGGCTCTCCGGTGATTGATTGGCTAGGTAGGGCAGTGGCTTTGAATGCTGGTAGCAAGTCATCAAGTGCATCAGCATTTTTTTTACCATTGGAACGAGTTGTGAGGGCATTGAAGTTTCTCCAAAATGGCAGAGATTCTTTTGTCAAAAAATGGGAGGCAGTTTCTATACTGCGTGGTACGCTTCAGGTAACTTTTGTCCACAAAGGATTTGATGAGACACGGCGACTTGGTCTTCGAAGTGAGACGGAGCAGAGGGTTCGACATGTGTCTCCACAGGGTGAAACTGGAATGCTTGTTGTTGAATCTGTGGTGCCAGGCGGTCCAGCTCATAAGTGTTTGGAGCCAGGTGATGTTCTTGTTTGCATGAATGGGGAAGTAATTACCCAATTTCTCAAAATGGAGACATTACTTGATGATAGTGTGAATCAAAAAATTGAAATACAGATCGAAAGGGGCGGCACACCATTTACTGTGAACTTGCTGGTGCAGGATTTGCACTCAATAACCCCTAATTACTTCTTAGAAGTAAGTGGTGCAGTGATACACCCTCTCTCGTATCAACAGGCTAGAAATTTTCGCTTCCAGTGTGGCCTTGTGTATGTGGCAGAGCCAGGATATATGCTCTTTAGAGCTGGAGTTCCGCGTCATGCTATCATTAAGAAGTTTGCTGGTCAGGAAATATCACTACTTGAGGATCTAATTTCAGTGCTATGCAAGCTATCTCGGGGTGCTCGAGTGCCATTAGAGTATATAAGCTATGCAGATCGTCATCGGAGGAAGTCAGTCCTGGTCACCGTTGATCGCCATGAATGGTATGCCCCTCCACAGATATACACTCGTGATGATAGTACTGGTCTTTGGACTGTGAAGCCTGCTTTTCAGCCTGATGCTGGTCTACTTTCATCTGGTATCAATGATCTTGGTGGTATAAGAAGTGATGCAGTTCCTCTATGTACTGAGGCCTCTTCTGTTGGGCACATGCATCGTAATAGCCATGCAGAATTGAATGAAGGGGTCACCAGTATGGAAACCAGTTATGAACATTCTTCTGAAGGAGGACATCCTCGGGCTGAATCTGATGTTGAAACAAAGAAACGCCGAGTGAAGGATGATTTTTCTTCTGATGGAAATGTCGTAGCCGACGGTTCCTTTCTTGAAACAGATGAAGGTGATCCGGAGGATGCAAATACTGTGGAGAATTCTGTTATGAGAGATCTTCAAGGTGAAAATGTAGCAGCAGCTAATTCTTCACTAGCTGAACGTATTATTGAGCCAACTCTTGTTATGCTTGAGGTTCATGTGCCACCATCATGTATGCTCGATGGTGTACATTCACAACATTTTTTTGGGACTGGTGTTATTATATACCACTCTCAAAATATGGGACTGATTGCTGTTGACAAGAATACAGTTGCGGTATCTGCATCTGATGTGATGCTCTCATTCGCCGCATTTCCAATTGAAATTCCAGGGGAGGTGGTTTTTCTCCATCCCGTTCACAATTATGCTCTCATTTCATATGATCCATTGGCCCTGGGCGCTGTTGGTATCTCGCTTGTTCGGGCTGCGAAACTACTTCCTGAGCCTGCAATACGTCGTGGGGATTCTGTGCATCTTGTTGGGCTAAGTAGAAGCCTACAAGCAACATCTAGAAAGTCTATTGTGACCAACCCATGCGCTGCAGTAAATATTAGCTCTGCTGATTGTCCACGTTACAGAGCAACCAATATGGAAGTGATCGAGCTTGATACTGATTTTGGCAGTACATTCTCTGGAGTGCTGACTGATGAGCATGGAAGGGTCCGAGCTATTTGGGGTAGCTTTTCAACTCAGTTGAAATTTGGTTGCAGTAGCTCCGAAGATCATCAATTTGTAAGAGGTATCCCAATATATACAATCAGTCAAGTCCTTGAACAAATCATATGTGGTGCTCAAGGCCCTCCTCTTCTCATAAATTGTGTCAAAAGGACGATGCCTCTAGTTAGAATTTTGGAGGTTGAACTATATCCTACACTGCTTTCAAAAGCCCGCAGTTTTGGACTGAGTGATGATTGGGTCCAAGCACTTGTCAAGAAAGATCCGATTAGACGACAGGTTTTACGTGTGAAAGGATGTTTAGCTGGATCTAAAGCCGAAAATCTGTTAGAACAAGGAGACATGGTCTTGGCAATCAATAAGGAACCAGTTACATGCTTCCGTGATGTAGAAAATGCCTGTCAAGAATTGGGAAAACATGAAAACAAAGATGGAAAGCTTAACATGACCATATTCCGTCAGGGGCGTGAGATTGATCTTCTCGTCGAAACAGATATTAGAGATGGGAGTGGTACTACACGTGTAATAAATTGGTGTGGATGTATTGTTCAGGATCCCCATCCCGCAGTGCGTGCTCTTGGATTTCTTCCAGAAGAAGGTCATGGTGTTTATGTGGCAAGGTGGTGTCATGGTAGCCCAGCGCATAGATATGGACTGTATGCTCTACAGTGGATTGTTGAAGTTAATGGAAAACAGATTCCTGATTTAGATGCTTTTTTGAATGTCACAAAGGAAATCGAACATGGAGAGTTTGTTCGTGTACGGACCATCCACCTAAATGGAAAACCTAAAGTTTTAACGTTGAAGCAGGACTTGCACTACTGGCCTACATGGGAGGTCAGATTTGATCCTGATTCTGCTATATGGCATCGAAACACAATTAAGGCACTAGACTATAGTTCTAATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0010109 GO:0010205 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0042548 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_1 PDZ_2 Trypsin_2

Protein Analysis

1113

Amino Acids

122.82

Weight (kDa)

5.74

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin_2	PF13365	73 - 219	8.8e-21	Trypsin-like peptidase domain
PDZ_6	PF17820	304 - 356	2.1e-07	PDZ domain
PDZ_1	PF12812	372 - 445	1.4e-14	PDZ-like domain
PDZ_1	PF12812	982 - 1057	1.1e-07	PDZ-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03380 AT3G03380
fragaria_vesca	FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890
malus_domestica	MD17G1256700.v1.1
prunus_persica	Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1
pyrus_communis	pycom17g25890
rosa_chinensis	RchiOBHm_Chr7g0220101
rosa_laevigata	RLG00000002258
rosa_multiflora	Rmu_sc0007553.1_g000006 Rmu_sc0018981.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239790
rosa_rugosa	Rorug07G0188800 Rorug07G0188900 Rorug07G0188900 Rorug07G0189000
rosa_samantha	Rh7AG332500 Rh7BG322400 Rh7CG350000 Rh7DG328200
rosa_wichuraiana	Rw7G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	596
AccB1I	GGYRCC	2 cut(s)	596, 925
AccI	GTMKAC	1 cut(s)	1510
AccII	CGCG	3 cut(s)	246, 318, 1258
AccIII	TCCGGA	1 cut(s)	1789
AclI	AACGTT	1 cut(s)	3230
AcsI	RAATTY	5 cut(s)	1186, 1813, 2079, 2453, 2601
AcuI	CTGAAG	5 cut(s)	74, 216, 425, 782, 1686
AcvI	CACGTG	1 cut(s)	2951
AcyI	GRCGYC	1 cut(s)	36
AdeI	CACNNNGTG	2 cut(s)	177, 893
AfaI	GTAC	9 cut(s)	508, 598, 793, 1465, 1570, 1944, 2380, 2944, 3192
AfiI	CCNNNNNNNGG	5 cut(s)	120, 606, 1505, 1720, 3026
AflIII	ACRYGT	4 cut(s)	877, 2716, 2948, 2950
AjnI	CCWGG	8 cut(s)	280, 385, 928, 958, 1225, 1401, 2083, 2148
AloI	GAACNNNNNNTCC	4 cut(s)	2961, 2993, 3168, 3200
Alw21I	GWGCWC	3 cut(s)	1348, 2548, 3007
Alw26I	GTCTC	7 cut(s)	13, 496, 824, 851, 888, 1010, 2763
AlwNI	CAGNNNCTG	1 cut(s)	403
Ama87I	CYCGRG	3 cut(s)	1338, 1347, 1680
Aor13HI	TCCGGA	1 cut(s)	1789
AoxI	GGCC	5 cut(s)	1204, 1575, 2145, 2551, 3254
ApeKI	GCWGC	6 cut(s)	437, 587, 1850, 1853, 2180, 2294
ApoI	RAATTY	5 cut(s)	1186, 1813, 2079, 2453, 2601
ArsI	GACNNNNNNTTYG	2 cut(s)	831, 863
Asp700I	GAANNNNTTC	2 cut(s)	324, 417
Asp718I	GGTACC	1 cut(s)	596
AspLEI	GCGC	5 cut(s)	133, 243, 2156, 2294, 3073
AspS9I	GGNCC	8 cut(s)	168, 284, 935, 2146, 2416, 2552, 2671, 3195
AsuHPI	GGTGA	9 cut(s)	250, 494, 637, 905, 974, 1399, 1624, 1796, 1850
AsuII	TTCGAA	1 cut(s)	850
AsuNHI	GCTAGC	1 cut(s)	209
AvaI	CYCGRG	3 cut(s)	1338, 1347, 1680
AvaII	GGWCC	6 cut(s)	168, 284, 935, 2416, 2671, 3195
AxyI	CCTNAGG	1 cut(s)	432
BaeGI	GKGCMC	1 cut(s)	1593
BamHI	GGATCC	2 cut(s)	349, 2983
BanI	GGYRCC	2 cut(s)	596, 925
BauI	CACGAG	1 cut(s)	1452
BbrPI	CACGTG	1 cut(s)	2951
BbsI	GAAGAC	1 cut(s)	839
Bbv12I	GWGCWC	3 cut(s)	1348, 2548, 3007
BbvI	GCAGC	6 cut(s)	424, 574, 1862, 1865, 2167, 2281
BccI	CCATC	9 cut(s)	545, 1733, 1930, 1931, 2112, 2855, 2927, 2997, 3206
BceAI	ACGGC	3 cut(s)	137, 189, 851
BcgI	CGANNNNNNTGC	6 cut(s)	61, 95, 854, 888, 1580, 1614
BciT130I	CCWGG	8 cut(s)	282, 387, 930, 960, 1227, 1403, 2085, 2150
BciVI	GTATCC	1 cut(s)	2507
BcoDI	GTCTC	7 cut(s)	13, 496, 824, 851, 888, 1010, 2763
BfaI	CTAG	8 cut(s)	210, 612, 638, 1182, 1868, 2265, 2594, 3320
BfmI	CTRYAG	5 cut(s)	288, 343, 2295, 3095, 3325
BfoI	RGCGCY	3 cut(s)	134, 244, 2157
BfuI	GTATCC	1 cut(s)	2507
BglI	GCCNNNNNGGC	1 cut(s)	434
BglII	AGATCT	1 cut(s)	1828
BmcAI	AGTACT	1 cut(s)	1465
Bme1390I	CCNGG	8 cut(s)	282, 387, 930, 960, 1227, 1403, 2085, 2150
Bme18I	GGWCC	6 cut(s)	168, 284, 935, 2416, 2671, 3195
BmeT110I	CYCGRG	3 cut(s)	1338, 1347, 1680
BmgT120I	GGNCC	8 cut(s)	168, 284, 935, 2146, 2416, 2552, 2671, 3195
BmiI	GGNNCC	9 cut(s)	351, 598, 927, 957, 1762, 2417, 2672, 2796, 2985
BmrFI	CCNGG	8 cut(s)	282, 387, 930, 960, 1227, 1403, 2085, 2150
BmtI	GCTAGC	1 cut(s)	213
BoxI	GACNNNNGTC	1 cut(s)	880
BpiI	GAAGAC	1 cut(s)	839
BplI	GAGNNNNNCTC	2 cut(s)	476, 508
BpmI	CTGGAG	3 cut(s)	35, 1269, 2409
Bpu10I	CCTNAGC	1 cut(s)	2196
Bpu14I	TTCGAA	1 cut(s)	850
BpuEI	CTTGAG	3 cut(s)	1325, 1925, 2532
BsaAI	YACGTR	2 cut(s)	2717, 2951
BsaBI	GATNNNNATC	2 cut(s)	1383, 2988
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	7 cut(s)	114, 171, 244, 1679, 2084, 2148, 2149
BsaWI	WCCGGW	3 cut(s)	352, 622, 1789
BsaXI	ACNNNNNCTCC	4 cut(s)	2760, 2790, 3168, 3198
Bsc4I	CCNNNNNNNGG	5 cut(s)	120, 606, 1505, 1720, 3026
Bse118I	RCCGGY	2 cut(s)	203, 221
Bse21I	CCTNAGG	1 cut(s)	432
Bse8I	GATNNNNATC	2 cut(s)	1383, 2988
BseAI	TCCGGA	1 cut(s)	1789
BseBI	CCWGG	8 cut(s)	282, 387, 930, 960, 1227, 1403, 2085, 2150
BseDI	CCNNGG	7 cut(s)	114, 171, 244, 1679, 2084, 2148, 2149
BseJI	GATNNNNATC	2 cut(s)	1383, 2988
BseLI	CCNNNNNNNGG	5 cut(s)	120, 606, 1505, 1720, 3026
BseMII	CTCAG	5 cut(s)	423, 1563, 2187, 2459, 2648
BseRI	GAGGAG	1 cut(s)	2547
BseSI	GKGCMC	1 cut(s)	1593
BseXI	GCAGC	6 cut(s)	424, 574, 1862, 1865, 2167, 2281
BseYI	CCCAGC	1 cut(s)	3067
BsgI	GTGCAG	2 cut(s)	1121, 1170
Bsh1236I	CGCG	3 cut(s)	246, 318, 1258
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	5 cut(s)	1206, 1577, 2147, 2553, 3256
BshNI	GGYRCC	2 cut(s)	596, 925
BsiEI	CGRYCG	1 cut(s)	114
BsiHKAI	GWGCWC	3 cut(s)	1348, 2548, 3007
BsiHKCI	CYCGRG	3 cut(s)	1338, 1347, 1680
BsiSI	CCGG	6 cut(s)	39, 204, 222, 353, 623, 1790
BslFI	GGGAC	3 cut(s)	131, 1978, 2013
BslI	CCNNNNNNNGG	5 cut(s)	120, 606, 1505, 1720, 3026
BsmAI	GTCTC	7 cut(s)	13, 496, 824, 851, 888, 1010, 2763
BsmBI	CGTCTC	1 cut(s)	851
BsmFI	GGGAC	3 cut(s)	131, 1978, 2013
BsmI	GAATGC	2 cut(s)	664, 909
BsnI	GGCC	5 cut(s)	1206, 1577, 2147, 2553, 3256
Bso31I	GGTCTC	1 cut(s)	496
BsoBI	CYCGRG	3 cut(s)	1338, 1347, 1680
Bsp119I	TTCGAA	1 cut(s)	850
Bsp1286I	GDGCHC	4 cut(s)	1348, 1593, 2548, 3007
Bsp13I	TCCGGA	1 cut(s)	1789
Bsp1407I	TGTACA	1 cut(s)	1942
Bsp68I	TCGCGA	1 cut(s)	318
BspANI	GGCC	5 cut(s)	1206, 1577, 2147, 2553, 3256
BspCNI	CTCAG	5 cut(s)	424, 1564, 2188, 2458, 2649
BspEI	TCCGGA	1 cut(s)	1789
BspFNI	CGCG	3 cut(s)	246, 318, 1258
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	9 cut(s)	351, 598, 927, 957, 1762, 2417, 2672, 2796, 2985
BspMAI	CTGCAG	1 cut(s)	2299
BspOI	GCTAGC	1 cut(s)	213
BspT104I	TTCGAA	1 cut(s)	850
BspT107I	GGYRCC	2 cut(s)	596, 925
BspTNI	GGTCTC	1 cut(s)	496
BsrFI	RCCGGY	2 cut(s)	203, 221
BsrGI	TGTACA	1 cut(s)	1942
BssAI	RCCGGY	2 cut(s)	203, 221
BssECI	CCNNGG	7 cut(s)	114, 171, 244, 1679, 2084, 2148, 2149
BssNI	GRCGYC	1 cut(s)	36
BssSI	CACGAG	1 cut(s)	1452
Bst2BI	CACGAG	1 cut(s)	1452
Bst2UI	CCWGG	8 cut(s)	282, 387, 930, 960, 1227, 1403, 2085, 2150
Bst4CI	ACNGT	9 cut(s)	399, 1087, 1411, 1480, 1760, 1807, 2026, 3087, 3099
Bst6I	CTCTTC	3 cut(s)	408, 1585, 2565
BstACI	GRCGYC	1 cut(s)	36
BstAPI	GCANNNNNTGC	3 cut(s)	1108, 3002, 3244
BstAUI	TGTACA	1 cut(s)	1942
BstBAI	YACGTR	2 cut(s)	2717, 2951
BstBI	TTCGAA	1 cut(s)	850
BstC8I	GCNNGC	8 cut(s)	135, 211, 585, 1331, 1488, 2202, 2644, 3003
BstDEI	CTNAG	7 cut(s)	432, 1135, 1572, 2196, 2240, 2445, 2657
BstDSI	CCRYGG	2 cut(s)	171, 244
BstEII	GGTNACC	2 cut(s)	1405, 1630
BstFNI	CGCG	3 cut(s)	246, 318, 1258
BstH2I	RGCGCY	3 cut(s)	134, 244, 2157
BstHHI	GCGC	5 cut(s)	133, 243, 2156, 2294, 3073
BstMAI	GTCTC	7 cut(s)	13, 496, 824, 851, 888, 1010, 2763
BstMCI	CGRYCG	1 cut(s)	114
BstNI	CCWGG	8 cut(s)	282, 387, 930, 960, 1227, 1403, 2085, 2150
BstNSI	RCATGY	4 cut(s)	583, 881, 1597, 2808
BstPAI	GACNNNNGTC	1 cut(s)	880
BstPI	GGTNACC	2 cut(s)	1405, 1630
BstSCI	CCNGG	8 cut(s)	280, 385, 928, 958, 1225, 1401, 2083, 2148
BstSFI	CTRYAG	5 cut(s)	288, 343, 2295, 3095, 3325
BstSLI	GKGCMC	1 cut(s)	1593
BstUI	CGCG	3 cut(s)	246, 318, 1258
BstV1I	GCAGC	6 cut(s)	424, 574, 1862, 1865, 2167, 2281
BstV2I	GAAGAC	1 cut(s)	839
BstX2I	RGATCY	6 cut(s)	349, 1309, 1828, 2692, 2738, 2983
BstXI	CCANNNNNNTGG	1 cut(s)	3209
BstYI	RGATCY	6 cut(s)	349, 1309, 1828, 2692, 2738, 2983
Bsu36I	CCTNAGG	1 cut(s)	432
BsuI	GTATCC	1 cut(s)	2507
BsuRI	GGCC	5 cut(s)	1206, 1577, 2147, 2553, 3256
BtgI	CCRYGG	2 cut(s)	171, 244
BtsI	GCAGTG	4 cut(s)	654, 1158, 2627, 3003
BtsIMutI	CAGTG	8 cut(s)	192, 654, 1158, 1205, 1326, 2627, 3003, 3104
BtuMI	TCGCGA	1 cut(s)	318
Cac8I	GCNNGC	8 cut(s)	135, 211, 585, 1331, 1488, 2202, 2644, 3003
CaiI	CAGNNNCTG	1 cut(s)	403
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	5 cut(s)	133, 243, 2156, 2294, 3073
Cfr10I	RCCGGY	2 cut(s)	203, 221
Cfr13I	GGNCC	8 cut(s)	168, 284, 935, 2146, 2416, 2552, 2671, 3195
Cfr42I	CCGCGG	1 cut(s)	247
CseI	GACGC	2 cut(s)	44, 1247
Csp6I	GTAC	9 cut(s)	507, 597, 792, 1464, 1569, 1943, 2379, 2943, 3191
CspCI	CAANNNNNGTGG	4 cut(s)	208, 243, 1788, 1823
CviQI	GTAC	9 cut(s)	507, 597, 792, 1464, 1569, 1943, 2379, 2943, 3191
DdeI	CTNAG	7 cut(s)	432, 1135, 1572, 2196, 2240, 2445, 2657
DraIII	CACNNNGTG	2 cut(s)	177, 893
Eam1104I	CTCTTC	3 cut(s)	408, 1585, 2565
EarI	CTCTTC	3 cut(s)	408, 1585, 2565
EciI	GGCGGA	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	1577
Eco31I	GGTCTC	1 cut(s)	496
Eco47I	GGWCC	6 cut(s)	168, 284, 935, 2416, 2671, 3195
Eco57I	CTGAAG	5 cut(s)	74, 216, 425, 782, 1686
Eco72I	CACGTG	1 cut(s)	2951
Eco81I	CCTNAGG	1 cut(s)	432
Eco88I	CYCGRG	3 cut(s)	1338, 1347, 1680
Eco91I	GGTNACC	2 cut(s)	1405, 1630
EcoO109I	RGGNCCY	1 cut(s)	2552
EcoO65I	GGTNACC	2 cut(s)	1405, 1630
EcoRI	GAATTC	1 cut(s)	1813
EcoRII	CCWGG	8 cut(s)	280, 385, 928, 958, 1225, 1401, 2083, 2148
EcoT22I	ATGCAT	1 cut(s)	1599
Esp3I	CGTCTC	1 cut(s)	851
FalI	AAGNNNNNCTT	2 cut(s)	3227, 3259
FaqI	GGGAC	3 cut(s)	131, 1978, 2013
FauI	CCCGC	5 cut(s)	93, 157, 239, 2651, 3001
FauNDI	CATATG	2 cut(s)	2134, 2537
FblI	GTMKAC	1 cut(s)	1510
FspBI	CTAG	8 cut(s)	210, 612, 638, 1182, 1868, 2265, 2594, 3320
GlaI	GCGC	5 cut(s)	132, 242, 2155, 2293, 3072
GsaI	CCCAGC	1 cut(s)	3071
GsuI	CTGGAG	3 cut(s)	35, 1269, 2409
HaeII	RGCGCY	3 cut(s)	134, 244, 2157
HaeIII	GGCC	5 cut(s)	1206, 1577, 2147, 2553, 3256
HapII	CCGG	6 cut(s)	39, 204, 222, 353, 623, 1790
HgaI	GACGC	2 cut(s)	44, 1247
HhaI	GCGC	5 cut(s)	133, 243, 2156, 2294, 3073
Hin1I	GRCGYC	1 cut(s)	36
Hin6I	GCGC	5 cut(s)	131, 241, 2154, 2292, 3071
HinP1I	GCGC	5 cut(s)	131, 241, 2154, 2292, 3071
HincII	GTYRAC	1 cut(s)	2014
HindII	GTYRAC	1 cut(s)	2014
HindIII	AAGCTT	1 cut(s)	2867
HpaII	CCGG	6 cut(s)	39, 204, 222, 353, 623, 1790
HphI	GGTGA	9 cut(s)	250, 494, 637, 905, 974, 1399, 1624, 1796, 1850
Hpy166II	GTNNAC	8 cut(s)	814, 1090, 1511, 1943, 2014, 2113, 2324, 3191
Hpy8I	GTNNAC	8 cut(s)	814, 1090, 1511, 1943, 2014, 2113, 2324, 3191
Hpy99I	CGWCG	8 cut(s)	65, 146, 158, 161, 236, 1760, 2214, 2918
HpyCH4III	ACNGT	9 cut(s)	399, 1087, 1411, 1480, 1760, 1807, 2026, 3087, 3099
HpyCH4IV	ACGT	7 cut(s)	141, 1876, 2209, 2326, 2716, 2950, 3230
HpyF3I	CTNAG	7 cut(s)	432, 1135, 1572, 2196, 2240, 2445, 2657
HpySE526I	ACGT	7 cut(s)	141, 1876, 2209, 2326, 2716, 2950, 3230
Hsp92I	GRCGYC	1 cut(s)	36
HspAI	GCGC	5 cut(s)	131, 241, 2154, 2292, 3071
Kpn2I	TCCGGA	1 cut(s)	1789
KpnI	GGTACC	1 cut(s)	600
KspI	CCGCGG	1 cut(s)	247
LmnI	GCTCC	4 cut(s)	538, 862, 955, 2474
Lsp1109I	GCAGC	6 cut(s)	424, 574, 1862, 1865, 2167, 2281
MaeI	CTAG	8 cut(s)	210, 612, 638, 1182, 1868, 2265, 2594, 3320
MaeII	ACGT	7 cut(s)	141, 1876, 2209, 2326, 2716, 2950, 3230
MaeIII	GTNAC	8 cut(s)	470, 802, 1405, 1630, 2278, 2327, 2800, 3154
MfeI	CAATTG	1 cut(s)	2073
MflI	RGATCY	6 cut(s)	349, 1309, 1828, 2692, 2738, 2983
MhlI	GDGCHC	4 cut(s)	1348, 1593, 2548, 3007
MmeI	TCCRAC	1 cut(s)	427
Mph1103I	ATGCAT	1 cut(s)	1599
MroI	TCCGGA	1 cut(s)	1789
MroXI	GAANNNNTTC	2 cut(s)	324, 417
MseI	TTAA	5 cut(s)	1272, 2871, 3114, 3227, 3312
MslI	CAYNNNNRTG	5 cut(s)	1637, 1924, 2118, 3078, 3207
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	6 cut(s)	39, 204, 222, 353, 623, 1790
MspR9I	CCNGG	8 cut(s)	282, 387, 930, 960, 1227, 1403, 2085, 2150
MunI	CAATTG	1 cut(s)	2073
Mva1269I	GAATGC	2 cut(s)	664, 909
MvaI	CCWGG	8 cut(s)	282, 387, 930, 960, 1227, 1403, 2085, 2150
MvnI	CGCG	3 cut(s)	246, 318, 1258
NdeI	CATATG	2 cut(s)	2134, 2537
NheI	GCTAGC	1 cut(s)	209
NlaIV	GGNNCC	9 cut(s)	351, 598, 927, 957, 1762, 2417, 2672, 2796, 2985
NmeAIII	GCCGAG	1 cut(s)	1739
NmuCI	GTSAC	4 cut(s)	1405, 1630, 2278, 3154
NruI	TCGCGA	1 cut(s)	318
NsiI	ATGCAT	1 cut(s)	1599
NspI	RCATGY	4 cut(s)	583, 881, 1597, 2808
NspV	TTCGAA	1 cut(s)	850
PaeR7I	CTCGAG	1 cut(s)	1347
PagI	TCATGA	1 cut(s)	358
PasI	CCCWGGG	1 cut(s)	2149
PceI	AGGCCT	1 cut(s)	1577
PciI	ACATGT	1 cut(s)	877
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 1345
PctI	GAATGC	2 cut(s)	664, 909
PdmI	GAANNNNTTC	2 cut(s)	324, 417
PflFI	GACNNNGTC	2 cut(s)	843, 2774
PmaCI	CACGTG	1 cut(s)	2951
PmlI	CACGTG	1 cut(s)	2951
Ppu21I	YACGTR	2 cut(s)	2717, 2951
PscI	ACATGT	1 cut(s)	877
PshAI	GACNNNNGTC	1 cut(s)	880
Psp1406I	AACGTT	1 cut(s)	3230
Psp6I	CCWGG	8 cut(s)	280, 385, 928, 958, 1225, 1401, 2083, 2148
PspCI	CACGTG	1 cut(s)	2951
PspEI	GGTNACC	2 cut(s)	1405, 1630
PspFI	CCCAGC	1 cut(s)	3067
PspGI	CCWGG	8 cut(s)	280, 385, 928, 958, 1225, 1401, 2083, 2148
PspN4I	GGNNCC	9 cut(s)	351, 598, 927, 957, 1762, 2417, 2672, 2796, 2985
PspPI	GGNCC	8 cut(s)	168, 284, 935, 2146, 2416, 2552, 2671, 3195
PspXI	VCTCGAGB	1 cut(s)	1347
PstI	CTGCAG	1 cut(s)	2299
PstNI	CAGNNNCTG	1 cut(s)	403
PsuI	RGATCY	6 cut(s)	349, 1309, 1828, 2692, 2738, 2983
PsyI	GACNNNGTC	2 cut(s)	843, 2774
RruI	TCGCGA	1 cut(s)	318
RsaI	GTAC	9 cut(s)	508, 598, 793, 1465, 1570, 1944, 2380, 2944, 3192
RsaNI	GTAC	9 cut(s)	507, 597, 792, 1464, 1569, 1943, 2379, 2943, 3191
RseI	CAYNNNNRTG	5 cut(s)	1637, 1924, 2118, 3078, 3207
SacII	CCGCGG	1 cut(s)	247
SaqAI	TTAA	5 cut(s)	1272, 2871, 3114, 3227, 3312
Sau96I	GGNCC	8 cut(s)	168, 284, 935, 2146, 2416, 2552, 2671, 3195
ScaI	AGTACT	1 cut(s)	1465
ScrFI	CCNGG	8 cut(s)	282, 387, 930, 960, 1227, 1403, 2085, 2150
SduI	GDGCHC	4 cut(s)	1348, 1593, 2548, 3007
SfcI	CTRYAG	5 cut(s)	288, 343, 2295, 3095, 3325
Sfr274I	CTCGAG	1 cut(s)	1347
Sfr303I	CCGCGG	1 cut(s)	247
SfuI	TTCGAA	1 cut(s)	850
SgrAI	CRCCGGYG	1 cut(s)	203
SgrBI	CCGCGG	1 cut(s)	247
SinI	GGWCC	6 cut(s)	168, 284, 935, 2416, 2671, 3195
SlaI	CTCGAG	1 cut(s)	1347
SmiMI	CAYNNNNRTG	5 cut(s)	1637, 1924, 2118, 3078, 3207
SmlI	CTYRAG	4 cut(s)	1304, 1347, 1904, 2547
SmoI	CTYRAG	4 cut(s)	1304, 1347, 1904, 2547
SseBI	AGGCCT	1 cut(s)	1577
SspI	AATATT	1 cut(s)	2305
SspMI	CTAG	8 cut(s)	210, 612, 638, 1182, 1868, 2265, 2594, 3320
StuI	AGGCCT	1 cut(s)	1577
StyD4I	CCNGG	8 cut(s)	280, 385, 928, 958, 1225, 1401, 2083, 2148
TaaI	ACNGT	9 cut(s)	399, 1087, 1411, 1480, 1760, 1807, 2026, 3087, 3099
TaiI	ACGT	7 cut(s)	144, 1879, 2212, 2329, 2719, 2953, 3233
TaqII	GACCGA	1 cut(s)	128
TatI	WGTACW	4 cut(s)	1463, 1568, 1942, 2378
TauI	GCSGC	4 cut(s)	203, 246, 1074, 2066
Tru1I	TTAA	5 cut(s)	1272, 2871, 3114, 3227, 3312
Tru9I	TTAA	5 cut(s)	1272, 2871, 3114, 3227, 3312
TscAI	CASTG	8 cut(s)	199, 654, 1158, 1205, 1326, 2634, 3003, 3104
TseFI	GTSAC	4 cut(s)	1405, 1630, 2278, 3154
TseI	GCWGC	6 cut(s)	437, 587, 1850, 1853, 2180, 2294
Tsp45I	GTSAC	4 cut(s)	1405, 1630, 2278, 3154
TspGWI	ACGGA	4 cut(s)	875, 2801, 2876, 3208
TspRI	CASTG	8 cut(s)	199, 654, 1158, 1205, 1326, 2634, 3003, 3104
Tth111I	GACNNNGTC	2 cut(s)	843, 2774
VpaK11BI	GGWCC	6 cut(s)	168, 284, 935, 2416, 2671, 3195
XapI	RAATTY	5 cut(s)	1186, 1813, 2079, 2453, 2601
XbaI	TCTAGA	1 cut(s)	2264
XceI	RCATGY	4 cut(s)	583, 881, 1597, 2808
XhoI	CTCGAG	1 cut(s)	1347
XmiI	GTMKAC	1 cut(s)	1510
XmnI	GAANNNNTTC	2 cut(s)	324, 417
XspI	CTAG	8 cut(s)	210, 612, 638, 1182, 1868, 2265, 2594, 3320
ZrmI	AGTACT	1 cut(s)	1465
Zsp2I	ATGCAT	1 cut(s)	1599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.