Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004820

Physical Location & Seq

Genomic Coordinates Reverse (-)

15956798 .. 15958464

Gene Structure 1667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0188800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCAGCACCGCCTTATGATCATTTCAAGAAGCTCCTCCTCCTCGGCGATAGTGGCGTTGGGAAGACCAGTCTACTTCTTCGATTCTCGGATATACCTATAGGGATAGACCTTAGTGTGAAGACCATCGAGATGGACAACGAATGGGTCAAACTGCAAATCTGTGACACAAACAGTCAGGAACGATTATTCAAAAAAATCACAAGAGCTTGCTACGAGGCAGCTGATGGTATTTTGTTGGTGTATGATGTTACGAATGAGTCATCATTTCAGCACGTTAGAGACTGGATTCGTAAAAACATACATTCTTCTTCTAACAATGTGAAGAAGGTACTGGTGGGGAACAAGGCGGACATGGATGATGAGAGCAAAAGGGCTGTATCAAGAGCTAGAGGTCAAACTCTTGCGGATGTGTGCGACATCATGTTCTTGGAAACCAGTGCAAAGACGAACAAGAATGTTGAAGACGTTTTCTTTGCATTAGCCTCGTGCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0010109 GO:0010205 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0042548 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_1 PDZ_2 Trypsin_2

Protein Analysis

165

Amino Acids

18.5

Weight (kDa)

6.3

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	11 - 162	1.5e-43	Ras family
Roc	PF08477	11 - 118	1.4e-15	Ras of Complex, Roc, domain of DAPkinase
Arf	PF00025	11 - 157	1.6e-06	ADP-ribosylation factor family
GTP_EFTU	PF00009	35 - 163	5e-06	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03380 AT3G03380
fragaria_vesca	FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890
malus_domestica	MD17G1256700.v1.1
prunus_persica	Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1
pyrus_communis	pycom17g25890
rosa_chinensis	RchiOBHm_Chr7g0220101
rosa_laevigata	RLG00000002258
rosa_multiflora	Rmu_sc0007553.1_g000006 Rmu_sc0018981.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239790
rosa_rugosa	Rorug07G0188800 Rorug07G0188900 Rorug07G0188900 Rorug07G0189000
rosa_samantha	Rh7AG332500 Rh7BG322400 Rh7CG350000 Rh7DG328200
rosa_wichuraiana	Rw7G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	73
AciI	CCGC	3 cut(s)	11, 350, 407
AfaI	GTAC	1 cut(s)	333
AgsI	TTSAA	3 cut(s)	28, 193, 464
AluBI	AGCT	4 cut(s)	34, 209, 224, 389
AluI	AGCT	4 cut(s)	34, 209, 224, 389
Alw21I	GWGCWC	1 cut(s)	494
Alw26I	GTCTC	1 cut(s)	276
Alw44I	GTGCAC	1 cut(s)	490
ApaLI	GTGCAC	1 cut(s)	490
ApeKI	GCWGC	2 cut(s)	5, 221
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
BaeGI	GKGCMC	1 cut(s)	494
BauI	CACGAG	1 cut(s)	487
BbsI	GAAGAC	3 cut(s)	71, 128, 471
Bbv12I	GWGCWC	1 cut(s)	494
BbvI	GCAGC	2 cut(s)	17, 233
BccI	CCATC	3 cut(s)	127, 134, 221
BcgI	CGANNNNNNTGC	1 cut(s)	468
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	99
BisI	GCNGC	2 cut(s)	6, 222
BlsI	GCNGC	2 cut(s)	7, 223
BpiI	GAAGAC	3 cut(s)	71, 128, 471
BsaJI	CCNNGG	1 cut(s)	43
Bse1I	ACTGG	4 cut(s)	69, 290, 339, 438
BseDI	CCNNGG	1 cut(s)	43
BseGI	GGATG	2 cut(s)	364, 415
BseNI	ACTGG	4 cut(s)	69, 290, 339, 438
BseRI	GAGGAG	3 cut(s)	26, 29, 32
BseSI	GKGCMC	1 cut(s)	494
BseXI	GCAGC	2 cut(s)	17, 233
BsiHKAI	GWGCWC	1 cut(s)	494
BsmAI	GTCTC	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	494
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	3 cut(s)	11, 350, 407
BsrI	ACTGG	4 cut(s)	69, 290, 339, 438
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	1 cut(s)	19
BssSI	CACGAG	1 cut(s)	487
Bst2BI	CACGAG	1 cut(s)	487
Bst4CI	ACNGT	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	364, 415
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	99
BstSLI	GKGCMC	1 cut(s)	494
BstV1I	GCAGC	2 cut(s)	17, 233
BstV2I	GAAGAC	3 cut(s)	71, 128, 471
BstXI	CCANNNNNNTGG	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	364, 415
BtsIMutI	CAGTG	1 cut(s)	445
Cac8I	GCNNGC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	2 cut(s)	355, 424
CviJI	RGCY	6 cut(s)	34, 209, 224, 377, 389, 485
CviKI_1	RGCY	6 cut(s)	34, 209, 224, 377, 389, 485
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	365
FaeI	CATG	2 cut(s)	358, 427
FaiI	YATR	7 cut(s)	18, 95, 101, 246, 302, 356, 425
FatI	CATG	2 cut(s)	354, 423
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	6, 222
FokI	GGATG	2 cut(s)	371, 422
Fsp4HI	GCNGC	2 cut(s)	6, 222
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	2 cut(s)	6, 222
Hin1II	CATG	2 cut(s)	358, 427
HinfI	GANTC	3 cut(s)	84, 260, 289
Hpy166II	GTNNAC	2 cut(s)	74, 492
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	4 cut(s)	28, 130, 179, 384
Hpy8I	GTNNAC	2 cut(s)	74, 492
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4IV	ACGT	2 cut(s)	276, 468
HpyCH4V	TGCA	4 cut(s)	157, 443, 479, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	2 cut(s)	276, 468
Hsp92II	CATG	2 cut(s)	358, 427
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	39
LpnPI	CCDG	5 cut(s)	82, 164, 271, 320, 451
Lsp1109I	GCAGC	2 cut(s)	17, 233
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	2 cut(s)	276, 468
MaeIII	GTNAC	2 cut(s)	164, 250
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	7 cut(s)	71, 76, 133, 300, 303, 337, 476
MhlI	GDGCHC	1 cut(s)	494
MlyI	GAGTC	1 cut(s)	269
MnlI	CCTC	6 cut(s)	47, 50, 53, 211, 386, 496
MseI	TTAA	1 cut(s)	496
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	2 cut(s)	358, 427
NmeAIII	GCCGAG	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	164
PfeI	GAWTC	2 cut(s)	84, 289
PkrI	GCNGC	2 cut(s)	7, 223
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	496
SatI	GCNGC	2 cut(s)	6, 222
Sau3AI	GATC	1 cut(s)	19
SchI	GAGTC	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	494
SfcI	CTRYAG	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	131
SsiI	CCGC	3 cut(s)	11, 350, 407
SspMI	CTAG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	176
TaiI	ACGT	2 cut(s)	279, 471
TaqI	TCGA	2 cut(s)	82, 129
TfiI	GAWTC	2 cut(s)	84, 289
Tru1I	TTAA	1 cut(s)	496
Tru9I	TTAA	1 cut(s)	496
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	2 cut(s)	5, 221
Tsp45I	GTSAC	1 cut(s)	164
TspRI	CASTG	1 cut(s)	445
VneI	GTGCAC	1 cut(s)	490
XmiI	GTMKAC	1 cut(s)	73
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.