Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004820

Physical Location & Seq

Genomic Coordinates Reverse (-)

15965684 .. 15968953

Gene Structure 3270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0189000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2067 bp

ATGGGTTCGATTCGTTTTCTCATTTCTCTGTTTCTTGTGCTCGGGGTTTTTACCCCTCCACCGCGAGTTTGTGGAAATGCAGAGCTCGGAGCACTGCTGCAGCTGAAGGCCTCTCTTGACCCAGAAGGCAAGTACTTGAGTTCATGGACTGAACATGGTGATCCGTGTAGTGGAACATTTGAAGGTGTGGCGTGTAATGAGAAGAGCAAAGTGGCTAATGTTTCTTTGCAGGGGAAGGGTCTTTCGGGTCGGCTTTCGCCGGCGGTGGCCGAGCTCCGGTGCTTGTCCGGTCTGTACTTGCATTATAATAACTTGTCAGGGGAGATTCCGAAGGAGATTGGAGCTCTAACTGGGCTTACTGATCTGTACCTCAATGTGAATAATCTCTCTGGGGGTATACCCCAAGAGATTGGGAAAATGGCTAGTCTTCAAGTTTTACAGCTATGTTGTAACCAGCTGAATGGGAGCATACCTACACAGATGGGGTCCTTGAAGAGGTTAAGTGTTCTTGCTTTGCAGTATAACAGAATCTCTGGTCAGATTCCTGCAAGCTTGGGGAACTTAGGGATGCTCAAAAGGCTTGATCTGGGCTTCAATAAGTTCTTTGGTACAATTCCTGCAAAGCTAGCTAGTATACCATCTTTGGAACTCTTAGATATCCGAAATAATTCTCTTTCTGGAGTGGTCTCTCCTGCTTTCAAGAGATTAAATGAAGGATTCAAGTCTGCAAACAACTCAGGCCTATGTGGAGTTGGATTTTCTACACTGAGAATTTGCACATCTTTTGACACGGACAGAGTGAATGATGATGGACTACCACTAGGACCAAACTTGAATAAAACAGTTGTTACTGCTCCTCCAAATGCCAACCCTGAGTCAGTAGATATCAACACCCATTGCAACCAAAACAATTGCAAAAAGTCGACCAAATTTCCGCAAGCTGCTGTAATTGCAGGAGTTATTGCACTCATTGTCACATTGGCTGGGGGTGTATTTCTGGCTCTTGTGCGGAACAGACGAAAGAAACAAAAGATTGGGAATACTTGTGATCCTTCTGATGGCCAGCTTAGCACTGATCAGGCCAAGGAGTTCTACAGGAGAAGTCCCTCTCCACTAGTGAGTCTTGAGTACTCTAATGCATGGGATCCCTTGGCCGATGGGCAAAATGGCCTTGGTTTCTCCTTCTCCCAGGAGTATCTCAAAAGCTATTGGTTCAACATGGAAGATGTGGAGTCTGCAACACAGTACTTCTCCGAGGTGAACCTGTTAGGGAAGAGCAAATTCTCTTCTGTCTATAAAGGAGTTCTGAGAGATGGTTCTCTTGTAGCTGTTAAGAGCATTAATGTGACCAGCTGCAAGTCTGAGGAAGCTGAATTTGTGAAGGGACTGCACTTAGTATTTTCGCTAACTCATGAAAACCTTGTCAAGCTGAAAGGTTTCTGCTGCTCTAGGGGCAGAGGTGAATGCTTCCTTATCTATGATTTTGCTCCTAATGGAAACCTCTCTCAATATCTCGATGTAATCGATGGAAAGAACCAAGTCCTTGACTGGTCCAAGAGAGTTTCTATCTTAAATGGCATTGCAAAAGGTATTGGATACTTGCACGGCAGTGAAGAAAACAAACCGGCCATGATTCATCAAAACATCTCTGTTGAAAAGGTTCTCCTTGATCAGCAATTTAAGCCATTGATTTCGGACTCTGGCCTTCCTAAGCTGCTAGCTGATGACATTGTCTTCTCCACTCTGAAGACAAGTGCTGCAATGGGATACCTAGCTCCTGAATATATCACCACTGGTCGTTTCACTGAGAAAAGTGATGTATATGCATTTGGAGTCATTGTCCTCCAAGTTATATCAGGGAATCTACAACTCAACACTTCGATGCGACTGGCTGCAGAATCATGCAGATATGAAGAATTTGTCGACACCAATCTAAAAGGGCAATTCTCAGAACCTGAAGCAGCTGCACTGGGAAAACTCGGACTAGTGTGCACCCATGAGCATCCTGACCAAAGGCCAACAATGCAGACAGTGATCCAGGAGCTGAGCAACCTTACAGCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0010109 GO:0010205 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0042548 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_1 PDZ_2 Trypsin_2

Protein Analysis

688

Amino Acids

74.54

Weight (kDa)

7.78

Isoelectric Point (pI)

31.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	26 - 66	3.5e-09	Leucine rich repeat N-terminal domain
LRR_8	PF13855	142 - 201	2.3e-07	Leucine rich repeat
Pkinase	PF00069	418 - 680	8e-27	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	421 - 682	3.2e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03380 AT3G03380
fragaria_vesca	FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890
malus_domestica	MD17G1256700.v1.1
prunus_persica	Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1
pyrus_communis	pycom17g25890
rosa_chinensis	RchiOBHm_Chr7g0220101
rosa_laevigata	RLG00000002258
rosa_multiflora	Rmu_sc0007553.1_g000006 Rmu_sc0018981.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239790
rosa_rugosa	Rorug07G0188800 Rorug07G0188900 Rorug07G0188900 Rorug07G0189000
rosa_samantha	Rh7AG332500 Rh7BG322400 Rh7CG350000 Rh7DG328200
rosa_wichuraiana	Rw7G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	306
AccI	GTMKAC	4 cut(s)	397, 634, 923, 1923
AccII	CGCG	1 cut(s)	64
AciI	CCGC	4 cut(s)	62, 263, 935, 1009
AclWI	GGATC	5 cut(s)	155, 1043, 1139, 1152, 2029
AcoI	YGGCCR	4 cut(s)	267, 1060, 1152, 1626
AcsI	RAATTY	5 cut(s)	771, 929, 1280, 1373, 1916
AcuI	CTGAAG	3 cut(s)	125, 1766, 1977
AfaI	GTAC	6 cut(s)	134, 296, 368, 610, 1130, 1247
AfiI	CCNNNNNNNGG	4 cut(s)	170, 276, 495, 1058
AgsI	TTSAA	9 cut(s)	182, 431, 493, 595, 700, 721, 835, 1216, 1655
AhlI	ACTAGT	2 cut(s)	1114, 1984
AjnI	CCWGG	2 cut(s)	1188, 2037
AleI	CACNNNNGTG	1 cut(s)	1608
Alw21I	GWGCWC	6 cut(s)	42, 87, 94, 276, 346, 1994
Alw26I	GTCTC	1 cut(s)	691
Alw44I	GTGCAC	1 cut(s)	1990
AlwI	GGATC	5 cut(s)	155, 1043, 1139, 1152, 2029
AlwNI	CAGNNNCTG	2 cut(s)	1955, 2044
Ama87I	CYCGRG	1 cut(s)	41
ApaLI	GTGCAC	1 cut(s)	1990
ApoI	RAATTY	5 cut(s)	771, 929, 1280, 1373, 1916
AseI	ATTAAT	1 cut(s)	1341
Asp700I	GAANNNNTTC	3 cut(s)	667, 1436, 1659
AspS9I	GGNCC	3 cut(s)	486, 824, 1551
AsuHPI	GGTGA	4 cut(s)	170, 1270, 1472, 1780
AsuNHI	GCTAGC	2 cut(s)	625, 1717
AvaI	CYCGRG	1 cut(s)	41
AvaII	GGWCC	3 cut(s)	486, 824, 1551
BaeGI	GKGCMC	1 cut(s)	1994
BalI	TGGCCA	1 cut(s)	1062
BamHI	GGATCC	1 cut(s)	1144
BanII	GRGCYC	3 cut(s)	87, 276, 346
BbsI	GAAGAC	3 cut(s)	419, 1726, 1754
Bbv12I	GWGCWC	6 cut(s)	42, 87, 94, 276, 346, 1994
BccI	CCATC	7 cut(s)	475, 646, 803, 1052, 1151, 1307, 1520
BceAI	ACGGC	1 cut(s)	1621
BciT130I	CCWGG	2 cut(s)	1190, 2039
BciVI	GTATCC	2 cut(s)	1589, 1760
BclI	TGATCA	2 cut(s)	1075, 1669
BcoDI	GTCTC	1 cut(s)	691
BcuI	ACTAGT	2 cut(s)	1114, 1984
BfaI	CTAG	9 cut(s)	423, 626, 630, 821, 1115, 1449, 1718, 1772, 1985
BfmI	CTRYAG	3 cut(s)	98, 1093, 1893
BfuI	GTATCC	2 cut(s)	1589, 1760
BlpI	GCTNAGC	2 cut(s)	1067, 2045
BmcAI	AGTACT	3 cut(s)	134, 1130, 1247
Bme1390I	CCNGG	2 cut(s)	1190, 2039
Bme18I	GGWCC	3 cut(s)	486, 824, 1551
BmeT110I	CYCGRG	1 cut(s)	41
BmgT120I	GGNCC	3 cut(s)	486, 824, 1551
BmiI	GGNNCC	2 cut(s)	487, 1146
BmrFI	CCNGG	2 cut(s)	1190, 2039
BmrI	ACTGGG	2 cut(s)	360, 1979
BmsI	GCATC	3 cut(s)	558, 1872, 2011
BmtI	GCTAGC	2 cut(s)	629, 1721
BmuI	ACTGGG	2 cut(s)	360, 1979
BpiI	GAAGAC	3 cut(s)	419, 1726, 1754
BpmI	CTGGAG	1 cut(s)	699
Bpu10I	CCTNAGC	1 cut(s)	1710
Bpu1102I	GCTNAGC	2 cut(s)	1067, 2045
BpuEI	CTTGAG	2 cut(s)	157, 1145
Bsa29I	ATCGAT	1 cut(s)	1524
BsaI	GGTCTC	1 cut(s)	691
BsaJI	CCNNGG	5 cut(s)	1083, 1149, 1171, 1188, 1254
BsaWI	WCCGGW	2 cut(s)	276, 287
BsaXI	ACNNNNNCTCC	4 cut(s)	841, 871, 1824, 1854
Bsc4I	CCNNNNNNNGG	4 cut(s)	170, 276, 495, 1058
Bse118I	RCCGGY	2 cut(s)	259, 1624
Bse1I	ACTGG	5 cut(s)	355, 1553, 1798, 1893, 1974
Bse3DI	GCAATG	3 cut(s)	895, 1578, 1767
BseBI	CCWGG	2 cut(s)	1190, 2039
BseCI	ATCGAT	1 cut(s)	1524
BseDI	CCNNGG	5 cut(s)	1083, 1149, 1171, 1188, 1254
BseGI	GGATG	2 cut(s)	573, 2002
BseLI	CCNNNNNNNGG	4 cut(s)	170, 276, 495, 1058
BseMI	GCAATG	3 cut(s)	895, 1578, 1767
BseMII	CTCAG	8 cut(s)	750, 758, 864, 1298, 1353, 1797, 1962, 2036
BseNI	ACTGG	5 cut(s)	355, 1553, 1798, 1893, 1974
BseRI	GAGGAG	1 cut(s)	846
BseSI	GKGCMC	1 cut(s)	1994
BseYI	CCCAGC	1 cut(s)	983
BsgI	GTGCAG	2 cut(s)	1373, 1950
Bsh1236I	CGCG	1 cut(s)	64
BshVI	ATCGAT	1 cut(s)	1524
BsiHKAI	GWGCWC	6 cut(s)	42, 87, 94, 276, 346, 1994
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	4 cut(s)	260, 277, 288, 1625
BslFI	GGGAC	2 cut(s)	1089, 1398
BslI	CCNNNNNNNGG	4 cut(s)	170, 276, 495, 1058
BsmAI	GTCTC	1 cut(s)	691
BsmFI	GGGAC	2 cut(s)	1089, 1398
BsmI	GAATGC	1 cut(s)	1469
Bso31I	GGTCTC	1 cut(s)	691
BsoBI	CYCGRG	1 cut(s)	41
Bsp1286I	GDGCHC	6 cut(s)	42, 87, 94, 276, 346, 1994
Bsp143I	GATC	8 cut(s)	160, 361, 583, 1048, 1075, 1144, 1669, 2034
Bsp1720I	GCTNAGC	2 cut(s)	1067, 2045
BspACI	CCGC	4 cut(s)	62, 263, 935, 1009
BspCNI	CTCAG	8 cut(s)	749, 759, 865, 1299, 1354, 1798, 1961, 2037
BspDI	ATCGAT	1 cut(s)	1524
BspFNI	CGCG	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	1411
BspLI	GGNNCC	2 cut(s)	487, 1146
BspMAI	CTGCAG	2 cut(s)	102, 1897
BspOI	GCTAGC	2 cut(s)	629, 1721
BspPI	GGATC	5 cut(s)	155, 1043, 1139, 1152, 2029
BspQI	GCTCTTC	2 cut(s)	197, 1268
BspTNI	GGTCTC	1 cut(s)	691
BsrDI	GCAATG	3 cut(s)	895, 1578, 1767
BsrFI	RCCGGY	2 cut(s)	259, 1624
BsrI	ACTGG	5 cut(s)	355, 1553, 1798, 1893, 1974
BssAI	RCCGGY	2 cut(s)	259, 1624
BssECI	CCNNGG	5 cut(s)	1083, 1149, 1171, 1188, 1254
BssMI	GATC	8 cut(s)	160, 361, 583, 1048, 1075, 1144, 1669, 2034
BssNAI	GTATAC	2 cut(s)	398, 635
BssT1I	CCWWGG	3 cut(s)	1083, 1149, 1171
Bst1107I	GTATAC	2 cut(s)	398, 635
Bst2UI	CCWGG	2 cut(s)	1190, 2039
Bst4CI	ACNGT	3 cut(s)	844, 1245, 2032
Bst6I	CTCTTC	4 cut(s)	197, 488, 1268, 1291
BstC8I	GCNNGC	6 cut(s)	261, 550, 627, 939, 1064, 1719
BstENI	CCTNNNNNAGG	1 cut(s)	493
BstF5I	GGATG	2 cut(s)	573, 2002
BstFNI	CGCG	1 cut(s)	64
BstKTI	GATC	8 cut(s)	163, 364, 586, 1051, 1078, 1147, 1672, 2037
BstMAI	GTCTC	1 cut(s)	691
BstMBI	GATC	8 cut(s)	160, 361, 583, 1048, 1075, 1144, 1669, 2034
BstMWI	GCNNNNNNNGC	7 cut(s)	577, 626, 950, 1068, 1452, 1681, 2023
BstNI	CCWGG	2 cut(s)	1190, 2039
BstSCI	CCNGG	2 cut(s)	1188, 2037
BstSFI	CTRYAG	3 cut(s)	98, 1093, 1893
BstSLI	GKGCMC	1 cut(s)	1994
BstUI	CGCG	1 cut(s)	64
BstV2I	GAAGAC	3 cut(s)	419, 1726, 1754
BstX2I	RGATCY	1 cut(s)	1144
BstXI	CCANNNNNNTGG	2 cut(s)	410, 461
BstYI	RGATCY	1 cut(s)	1144
BstZ17I	GTATAC	2 cut(s)	398, 635
Bsu15I	ATCGAT	1 cut(s)	1524
BsuI	GTATCC	2 cut(s)	1589, 1760
BsuTUI	ATCGAT	1 cut(s)	1524
BtsCI	GGATG	2 cut(s)	573, 2002
BtsI	GCAGTG	2 cut(s)	92, 1615
BtsIMutI	CAGTG	8 cut(s)	92, 764, 1071, 1615, 1791, 1803, 1967, 2037
Cac8I	GCNNGC	6 cut(s)	261, 550, 627, 939, 1064, 1719
CaiI	CAGNNNCTG	2 cut(s)	1955, 2044
CciI	TCATGA	1 cut(s)	1411
Cfr10I	RCCGGY	2 cut(s)	259, 1624
Cfr13I	GGNCC	3 cut(s)	486, 824, 1551
ClaI	ATCGAT	1 cut(s)	1524
Csp6I	GTAC	6 cut(s)	133, 295, 367, 609, 1129, 1246
CviAII	CATG	8 cut(s)	144, 155, 1140, 1219, 1412, 1630, 1902, 1997
CviQI	GTAC	6 cut(s)	133, 295, 367, 609, 1129, 1246
DpnI	GATC	8 cut(s)	162, 363, 585, 1050, 1077, 1146, 1671, 2036
DpnII	GATC	8 cut(s)	160, 361, 583, 1048, 1075, 1144, 1669, 2034
EaeI	YGGCCR	4 cut(s)	267, 1060, 1152, 1626
Eam1104I	CTCTTC	4 cut(s)	197, 488, 1268, 1291
EarI	CTCTTC	4 cut(s)	197, 488, 1268, 1291
Ecl136II	GAGCTC	3 cut(s)	85, 274, 344
Eco130I	CCWWGG	3 cut(s)	1083, 1149, 1171
Eco147I	AGGCCT	2 cut(s)	110, 741
Eco24I	GRGCYC	3 cut(s)	87, 276, 346
Eco31I	GGTCTC	1 cut(s)	691
Eco32I	GATATC	2 cut(s)	658, 886
Eco47I	GGWCC	3 cut(s)	486, 824, 1551
Eco53kI	GAGCTC	3 cut(s)	85, 274, 344
Eco57I	CTGAAG	3 cut(s)	125, 1766, 1977
Eco88I	CYCGRG	1 cut(s)	41
EcoICRI	GAGCTC	3 cut(s)	85, 274, 344
EcoNI	CCTNNNNNAGG	1 cut(s)	493
EcoO109I	RGGNCCY	1 cut(s)	486
EcoRII	CCWGG	2 cut(s)	1188, 2037
EcoRV	GATATC	2 cut(s)	658, 886
EcoT14I	CCWWGG	3 cut(s)	1083, 1149, 1171
EcoT22I	ATGCAT	2 cut(s)	1141, 1828
EcoT38I	GRGCYC	3 cut(s)	87, 276, 346
ErhI	CCWWGG	3 cut(s)	1083, 1149, 1171
FaeI	CATG	8 cut(s)	147, 158, 1143, 1222, 1415, 1633, 1905, 2000
FaqI	GGGAC	2 cut(s)	1089, 1398
FatI	CATG	8 cut(s)	143, 154, 1139, 1218, 1411, 1629, 1901, 1996
FbaI	TGATCA	2 cut(s)	1075, 1669
FblI	GTMKAC	4 cut(s)	397, 634, 923, 1923
FokI	GGATG	2 cut(s)	580, 1989
FriOI	GRGCYC	3 cut(s)	87, 276, 346
FspBI	CTAG	9 cut(s)	423, 626, 630, 821, 1115, 1449, 1718, 1772, 1985
GsaI	CCCAGC	1 cut(s)	987
GsuI	CTGGAG	1 cut(s)	699
HapII	CCGG	4 cut(s)	260, 277, 288, 1625
Hin1II	CATG	8 cut(s)	147, 158, 1143, 1222, 1415, 1633, 1905, 2000
HincII	GTYRAC	2 cut(s)	924, 1924
HindII	GTYRAC	2 cut(s)	924, 1924
HindIII	AAGCTT	1 cut(s)	550
HpaII	CCGG	4 cut(s)	260, 277, 288, 1625
HphI	GGTGA	4 cut(s)	170, 1270, 1472, 1780
Hpy166II	GTNNAC	6 cut(s)	398, 635, 924, 1261, 1924, 1992
Hpy188III	TCNNGA	8 cut(s)	116, 678, 700, 1124, 1412, 1514, 1778, 2006
Hpy8I	GTNNAC	6 cut(s)	398, 635, 924, 1261, 1924, 1992
HpyCH4III	ACNGT	3 cut(s)	844, 1245, 2032
HpyF10VI	GCNNNNNNNGC	7 cut(s)	577, 626, 950, 1068, 1452, 1681, 2023
Hsp92II	CATG	8 cut(s)	147, 158, 1143, 1222, 1415, 1633, 1905, 2000
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
Ksp22I	TGATCA	2 cut(s)	1075, 1669
Kzo9I	GATC	8 cut(s)	160, 361, 583, 1048, 1075, 1144, 1669, 2034
LguI	GCTCTTC	2 cut(s)	197, 1268
LmnI	GCTCC	8 cut(s)	89, 279, 341, 465, 859, 1492, 1780, 2041
LweI	GCATC	3 cut(s)	558, 1872, 2011
MaeI	CTAG	9 cut(s)	423, 626, 630, 821, 1115, 1449, 1718, 1772, 1985
MaeIII	GTNAC	4 cut(s)	449, 847, 973, 1345
MalI	GATC	8 cut(s)	162, 363, 585, 1050, 1077, 1146, 1671, 2036
MboI	GATC	8 cut(s)	160, 361, 583, 1048, 1075, 1144, 1669, 2034
MfeI	CAATTG	1 cut(s)	910
MflI	RGATCY	1 cut(s)	1144
MhlI	GDGCHC	6 cut(s)	42, 87, 94, 276, 346, 1994
MlsI	TGGCCA	1 cut(s)	1062
MluNI	TGGCCA	1 cut(s)	1062
MlyI	GAGTC	5 cut(s)	884, 1129, 1241, 1691, 1842
MmeI	TCCRAC	1 cut(s)	733
Mox20I	TGGCCA	1 cut(s)	1062
Mph1103I	ATGCAT	2 cut(s)	1141, 1828
MreI	CGCCGGCG	1 cut(s)	259
MroNI	GCCGGC	1 cut(s)	259
MroXI	GAANNNNTTC	3 cut(s)	667, 1436, 1659
MscI	TGGCCA	1 cut(s)	1062
MseI	TTAA	6 cut(s)	500, 707, 1332, 1341, 1571, 1680
MslI	CAYNNNNRTG	3 cut(s)	1343, 1608, 1880
Msp20I	TGGCCA	1 cut(s)	1062
MspA1I	CMGCKG	4 cut(s)	103, 457, 1353, 1964
MspI	CCGG	4 cut(s)	260, 277, 288, 1625
MspR9I	CCNGG	2 cut(s)	1190, 2039
MunI	CAATTG	1 cut(s)	910
Mva1269I	GAATGC	1 cut(s)	1469
MvaI	CCWGG	2 cut(s)	1190, 2039
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	7 cut(s)	577, 626, 950, 1068, 1452, 1681, 2023
NaeI	GCCGGC	1 cut(s)	261
NdeII	GATC	8 cut(s)	160, 361, 583, 1048, 1075, 1144, 1669, 2034
NgoMIV	GCCGGC	1 cut(s)	259
NheI	GCTAGC	2 cut(s)	625, 1717
NlaIII	CATG	8 cut(s)	147, 158, 1143, 1222, 1415, 1633, 1905, 2000
NlaIV	GGNNCC	2 cut(s)	487, 1146
NmeAIII	GCCGAG	1 cut(s)	295
NmuCI	GTSAC	2 cut(s)	973, 1345
NsiI	ATGCAT	2 cut(s)	1141, 1828
OliI	CACNNNNGTG	1 cut(s)	1608
PagI	TCATGA	1 cut(s)	1411
PceI	AGGCCT	2 cut(s)	110, 741
PciSI	GCTCTTC	2 cut(s)	197, 1268
PcsI	WCGNNNNNNNCGW	1 cut(s)	1521
PctI	GAATGC	1 cut(s)	1469
PdiI	GCCGGC	1 cut(s)	261
PdmI	GAANNNNTTC	3 cut(s)	667, 1436, 1659
PfeI	GAWTC	8 cut(s)	10, 325, 528, 541, 717, 1633, 1861, 1898
PflFI	GACNNNGTC	1 cut(s)	1730
PfoI	TCCNGGA	1 cut(s)	2037
PleI	GAGTC	5 cut(s)	883, 1128, 1240, 1691, 1841
PpsI	GAGTC	5 cut(s)	883, 1128, 1240, 1691, 1841
PpuMI	RGGWCCY	1 cut(s)	486
PshBI	ATTAAT	1 cut(s)	1341
PsiI	TTATAA	1 cut(s)	306
Psp124BI	GAGCTC	3 cut(s)	87, 276, 346
Psp5II	RGGWCCY	1 cut(s)	486
Psp6I	CCWGG	2 cut(s)	1188, 2037
PspFI	CCCAGC	1 cut(s)	983
PspGI	CCWGG	2 cut(s)	1188, 2037
PspN4I	GGNNCC	2 cut(s)	487, 1146
PspPI	GGNCC	3 cut(s)	486, 824, 1551
PspPPI	RGGWCCY	1 cut(s)	486
PstI	CTGCAG	2 cut(s)	102, 1897
PstNI	CAGNNNCTG	2 cut(s)	1955, 2044
PsuI	RGATCY	1 cut(s)	1144
PsyI	GACNNNGTC	1 cut(s)	1730
PvuII	CAGCTG	4 cut(s)	103, 457, 1353, 1964
RsaI	GTAC	6 cut(s)	134, 296, 368, 610, 1130, 1247
RsaNI	GTAC	6 cut(s)	133, 295, 367, 609, 1129, 1246
RseI	CAYNNNNRTG	3 cut(s)	1343, 1608, 1880
SacI	GAGCTC	3 cut(s)	87, 276, 346
SalI	GTCGAC	2 cut(s)	922, 1922
SapI	GCTCTTC	2 cut(s)	197, 1268
SaqAI	TTAA	6 cut(s)	500, 707, 1332, 1341, 1571, 1680
Sau3AI	GATC	8 cut(s)	160, 361, 583, 1048, 1075, 1144, 1669, 2034
Sau96I	GGNCC	3 cut(s)	486, 824, 1551
ScaI	AGTACT	3 cut(s)	134, 1130, 1247
SchI	GAGTC	5 cut(s)	884, 1129, 1241, 1691, 1842
ScrFI	CCNGG	2 cut(s)	1190, 2039
SduI	GDGCHC	6 cut(s)	42, 87, 94, 276, 346, 1994
SfaNI	GCATC	3 cut(s)	558, 1872, 2011
SfcI	CTRYAG	3 cut(s)	98, 1093, 1893
SgrAI	CRCCGGYG	1 cut(s)	259
SinI	GGWCC	3 cut(s)	486, 824, 1551
SmiMI	CAYNNNNRTG	3 cut(s)	1343, 1608, 1880
SmlI	CTYRAG	2 cut(s)	136, 1124
SmoI	CTYRAG	2 cut(s)	136, 1124
SpeI	ACTAGT	2 cut(s)	1114, 1984
SseBI	AGGCCT	2 cut(s)	110, 741
SsiI	CCGC	4 cut(s)	62, 263, 935, 1009
SspMI	CTAG	9 cut(s)	423, 626, 630, 821, 1115, 1449, 1718, 1772, 1985
SstI	GAGCTC	3 cut(s)	87, 276, 346
StuI	AGGCCT	2 cut(s)	110, 741
StyD4I	CCNGG	2 cut(s)	1188, 2037
StyI	CCWWGG	3 cut(s)	1083, 1149, 1171
TaaI	ACNGT	3 cut(s)	844, 1245, 2032
TaqI	TCGA	6 cut(s)	8, 923, 1515, 1524, 1880, 1923
TatI	WGTACW	4 cut(s)	132, 294, 1128, 1245
TfiI	GAWTC	8 cut(s)	10, 325, 528, 541, 717, 1633, 1861, 1898
Tru1I	TTAA	6 cut(s)	500, 707, 1332, 1341, 1571, 1680
Tru9I	TTAA	6 cut(s)	500, 707, 1332, 1341, 1571, 1680
TscAI	CASTG	8 cut(s)	99, 771, 1078, 1615, 1798, 1810, 1974, 2037
TseFI	GTSAC	2 cut(s)	973, 1345
Tsp45I	GTSAC	2 cut(s)	973, 1345
TspDTI	ATGAA	5 cut(s)	132, 726, 1428, 1625, 1926
TspGWI	ACGGA	2 cut(s)	153, 806
TspRI	CASTG	8 cut(s)	99, 771, 1078, 1615, 1798, 1810, 1974, 2037
Tth111I	GACNNNGTC	1 cut(s)	1730
VneI	GTGCAC	1 cut(s)	1990
VpaK11BI	GGWCC	3 cut(s)	486, 824, 1551
VspI	ATTAAT	1 cut(s)	1341
XagI	CCTNNNNNAGG	1 cut(s)	493
XapI	RAATTY	5 cut(s)	771, 929, 1280, 1373, 1916
XmiI	GTMKAC	4 cut(s)	397, 634, 923, 1923
XmnI	GAANNNNTTC	3 cut(s)	667, 1436, 1659
XspI	CTAG	9 cut(s)	423, 626, 630, 821, 1115, 1449, 1718, 1772, 1985
ZrmI	AGTACT	3 cut(s)	134, 1130, 1247
Zsp2I	ATGCAT	2 cut(s)	1141, 1828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.