Rmu_sc0018981.1_g000001

protease Do-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018981.1
Physical Location & Seq
Forward (+)
1 .. 5136
5136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018981.1_g000001.1.cds

Sequence Viewer

Length: 1809 bp
agtgatgcagttcctctatgtactgaggcctcttctgttgggcacatgcatcgtaatagccatgcagaattgaatgaagggctcaccagtatggaaaccagttatgaacattcttctgaaggaggacatcctcgggttgaatctgatgttgaaacaaagaaacgccgagtgaaggtggatttttcttctgatggaaatgtcctagccgacggttcctttcttgaaacagatgaaggtgatccggaggatgcaaatactgtggagaattctgttatgagagatcttcaaggtgaaaatgtagcagcagctaattcttcactagctgaacgtattatcgagccaactcttgttatgcttgaggttcatgtgccaccatcatgtatgctcgatggtgtacattcacaacatttttttgggactggtgttattatataccactctcaaaatatgggactgattgccgttgacaagaatacagttgcggtatctgcatctgatgtgatgctctcattcgccgcatttccaattgaaattccaggggaggtggtttttctccatcccgttcacaattatgctctcatttcatatgatccattggctctgggcgctgttggtaactcgcttgttcgggctgcgaaactacttcctgagcctgcaatacgtcgtggggattctgtgcatcttattgggctaagtagaagcctacaagcaacatctagaaagtctattgtgaccaacccatgcgctgcagttaatattagctctgctgattgtccacgttacagagcaaccaatatggaagttatcgagcttgatactgattttggcagtacattctctggagtgctaactgatgagcatggaagggtccgagctatttggggtagcttttcaactcagttgaaatttggttgcagtagctccgaagatcatcaatttgtaagaggtatcccaatatatacaatcagtcaagtccttgaacaaatcatatgtggtgctcaaggccctcctcttctcataaattgtgtcaaaaggacgatgcctctagttagaattttggaggttgaactatatcctacactgctttcaaaagcccgcagttttggactgagtgatgattgggtccaagcacttgtcaagaaagatccgattagacgacaggttttacgtgtgaaaggatgtttagctggatctaaagccgaaaatctgttagaacaaggagacatggtcttggcaatcaataaggaaccagtaacatgcttccgtgatgtagaaaatgcctgtcaagaattgggaaaacatgaaaacaaagatggaaagcttaacatgaccatattccgtcaggggcatgagattgatcttctcgtcgaaacagatattagagatgggagtggtactacacgtgtaataaattggtgtggatgtattgttcaggatccccatcccgcagtgcgtgctcttggatttcttccagaagaaggtcatgatggaatagttggcaagggaaagcctaaaccttactccgccaagcccaaaggggatttggtggtctggttatggtgtgacttgatagaggtctttgttgtgatcagtggctttcctgaagcttgtattaggcatctgacaagggtctggtctgatcacttccctttattcttgagccttgatccttgtccacctcatcttaggcctttttgttttgaggctatgtggcttaagcgccatgattttaatcaagctgtcactgccagctgtaatcatctgaacttctgctcgaatgtccaggtctttgggcacttgcagcaatga

Protein Analysis

602

Amino Acids

66.19

Weight (kDa)

5.62

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 241
AciI CCGC 5 cut(s) 482, 516, 1096, 1446, 1524
AclWI GGATC 7 cut(s) 233, 584, 1139, 1198, 1430, 1443, 1661
AcsI RAATTY 4 cut(s) 265, 531, 905, 1053
AcuI CTGAAG 2 cut(s) 138, 1623
AcvI CACGTG 1 cut(s) 1403
AfaI GTAC 4 cut(s) 22, 396, 832, 1396
AfiI CCNNNNNNNGG 2 cut(s) 172, 1478
AflII CTTAAG 1 cut(s) 1715
AflIII ACRYGT 3 cut(s) 1168, 1400, 1402
AjnI CCWGG 2 cut(s) 535, 1782
AloI GAACNNNNNNTCC 2 cut(s) 1413, 1445
Alw21I GWGCWC 2 cut(s) 1000, 1459
Alw26I GTCTC 1 cut(s) 1215
AlwI GGATC 7 cut(s) 233, 584, 1139, 1198, 1430, 1443, 1661
Ama87I CYCGRG 1 cut(s) 132
Aor13HI TCCGGA 1 cut(s) 241
AoxI GGCC 3 cut(s) 27, 1003, 1688
ApeKI GCWGC 5 cut(s) 302, 305, 632, 746, 1801
ApoI RAATTY 4 cut(s) 265, 531, 905, 1053
AspLEI GCGC 3 cut(s) 608, 746, 1722
AspS9I GGNCC 3 cut(s) 868, 1004, 1123
AsuHPI GGTGA 3 cut(s) 76, 248, 302
AvaI CYCGRG 1 cut(s) 132
AvaII GGWCC 2 cut(s) 868, 1123
BaeGI GKGCMC 2 cut(s) 45, 1797
BamHI GGATCC 1 cut(s) 1435
BanII GRGCYC 1 cut(s) 84
BbrPI CACGTG 1 cut(s) 1403
Bbv12I GWGCWC 2 cut(s) 1000, 1459
BbvI GCAGC 4 cut(s) 314, 317, 619, 733
BccI CCATC 8 cut(s) 185, 382, 383, 564, 1307, 1379, 1449, 1481
BceAI ACGGC 1 cut(s) 446
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BciT130I CCWGG 2 cut(s) 537, 1784
BciVI GTATCC 1 cut(s) 959
BclI TGATCA 2 cut(s) 1587, 1639
BcoDI GTCTC 1 cut(s) 1215
BfaI CTAG 4 cut(s) 203, 320, 717, 1046
BfmI CTRYAG 1 cut(s) 747
BfoI RGCGCY 2 cut(s) 609, 1723
BfrI CTTAAG 1 cut(s) 1715
BfuI GTATCC 1 cut(s) 959
BglII AGATCT 1 cut(s) 280
BisI GCNGC 6 cut(s) 303, 306, 516, 633, 747, 1802
BlsI GCNGC 6 cut(s) 304, 307, 517, 634, 748, 1803
Bme1390I CCNGG 2 cut(s) 537, 1784
Bme18I GGWCC 2 cut(s) 868, 1123
BmeT110I CYCGRG 1 cut(s) 132
BmgT120I GGNCC 3 cut(s) 868, 1004, 1123
BmiI GGNNCC 5 cut(s) 214, 869, 1124, 1248, 1437
BmrFI CCNGG 2 cut(s) 537, 1784
BmsI GCATC 7 cut(s) 58, 238, 492, 500, 688, 1029, 1627
BoxI GACNNNNGTC 1 cut(s) 1628
BpmI CTGGAG 1 cut(s) 861
Bpu10I CCTNAGC 1 cut(s) 648
BpuEI CTTGAG 3 cut(s) 377, 984, 1678
BsaAI YACGTR 2 cut(s) 1169, 1403
BsaBI GATNNNNATC 2 cut(s) 1440, 1731
BsaJI CCNNGG 2 cut(s) 131, 536
BsaWI WCCGGW 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 1212, 1242
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 1478
Bse1I ACTGG 4 cut(s) 87, 99, 424, 1250
Bse8I GATNNNNATC 2 cut(s) 1440, 1731
BseAI TCCGGA 1 cut(s) 241
BseBI CCWGG 2 cut(s) 537, 1784
BseDI CCNNGG 2 cut(s) 131, 536
BseGI GGATG 6 cut(s) 127, 253, 556, 1184, 1427, 1441
BseJI GATNNNNATC 2 cut(s) 1440, 1731
BseLI CCNNNNNNNGG 2 cut(s) 172, 1478
BseMII CTCAG 4 cut(s) 15, 639, 911, 1100
BseNI ACTGG 4 cut(s) 87, 99, 424, 1250
BseRI GAGGAG 1 cut(s) 999
BseSI GKGCMC 2 cut(s) 45, 1797
BseXI GCAGC 4 cut(s) 314, 317, 619, 733
BshFI GGCC 3 cut(s) 29, 1005, 1690
BsiHKAI GWGCWC 2 cut(s) 1000, 1459
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 2 cut(s) 430, 465
BslI CCNNNNNNNGG 2 cut(s) 172, 1478
BsmAI GTCTC 1 cut(s) 1215
BsmFI GGGAC 2 cut(s) 430, 465
BsnI GGCC 3 cut(s) 29, 1005, 1690
BsoBI CYCGRG 1 cut(s) 132
Bsp1286I GDGCHC 5 cut(s) 45, 84, 1000, 1459, 1797
Bsp13I TCCGGA 1 cut(s) 241
Bsp1407I TGTACA 1 cut(s) 394
BspACI CCGC 5 cut(s) 482, 516, 1096, 1446, 1524
BspANI GGCC 3 cut(s) 29, 1005, 1690
BspCNI CTCAG 4 cut(s) 16, 640, 910, 1101
BspEI TCCGGA 1 cut(s) 241
BspHI TCATGA 1 cut(s) 1483
BspLI GGNNCC 5 cut(s) 214, 869, 1124, 1248, 1437
BspMAI CTGCAG 1 cut(s) 751
BspPI GGATC 7 cut(s) 233, 584, 1139, 1198, 1430, 1443, 1661
BspTI CTTAAG 1 cut(s) 1715
BsrGI TGTACA 1 cut(s) 394
BsrI ACTGG 4 cut(s) 87, 99, 424, 1250
BssECI CCNNGG 2 cut(s) 131, 536
Bst2UI CCWGG 2 cut(s) 537, 1784
Bst4CI ACNGT 3 cut(s) 212, 259, 478
Bst6I CTCTTC 2 cut(s) 37, 1017
BstAFI CTTAAG 1 cut(s) 1715
BstAPI GCANNNNNTGC 1 cut(s) 1454
BstAUI TGTACA 1 cut(s) 394
BstBAI YACGTR 2 cut(s) 1169, 1403
BstC8I GCNNGC 4 cut(s) 654, 1096, 1455, 1750
BstDEI CTNAG 6 cut(s) 24, 648, 692, 897, 1109, 1685
BstF5I GGATG 6 cut(s) 127, 253, 556, 1184, 1427, 1441
BstH2I RGCGCY 2 cut(s) 609, 1723
BstHHI GCGC 3 cut(s) 608, 746, 1722
BstMAI GTCTC 1 cut(s) 1215
BstMWI GCNNNNNNNGC 5 cut(s) 488, 605, 1454, 1745, 1801
BstNI CCWGG 2 cut(s) 537, 1784
BstNSI RCATGY 2 cut(s) 49, 1260
BstPAI GACNNNNGTC 1 cut(s) 1628
BstSCI CCNGG 2 cut(s) 535, 1782
BstSFI CTRYAG 1 cut(s) 747
BstSLI GKGCMC 2 cut(s) 45, 1797
BstV1I GCAGC 4 cut(s) 314, 317, 619, 733
BstX2I RGATCY 4 cut(s) 280, 1144, 1190, 1435
BstXI CCANNNNNNTGG 1 cut(s) 1790
BstYI RGATCY 4 cut(s) 280, 1144, 1190, 1435
BsuI GTATCC 1 cut(s) 959
BsuRI GGCC 3 cut(s) 29, 1005, 1690
BtsCI GGATG 6 cut(s) 127, 253, 556, 1184, 1427, 1441
BtsI GCAGTG 3 cut(s) 1079, 1455, 1743
BtsIMutI CAGTG 4 cut(s) 1079, 1455, 1597, 1743
Cac8I GCNNGC 4 cut(s) 654, 1096, 1455, 1750
CciI TCATGA 1 cut(s) 1483
CfoI GCGC 3 cut(s) 608, 746, 1722
Cfr13I GGNCC 3 cut(s) 868, 1004, 1123
Csp6I GTAC 4 cut(s) 21, 395, 831, 1395
CspCI CAANNNNNGTGG 2 cut(s) 240, 275
CviQI GTAC 4 cut(s) 21, 395, 831, 1395
DdeI CTNAG 6 cut(s) 24, 648, 692, 897, 1109, 1685
Eam1104I CTCTTC 2 cut(s) 37, 1017
EarI CTCTTC 2 cut(s) 37, 1017
EciI GGCGGA 1 cut(s) 1513
Eco147I AGGCCT 2 cut(s) 29, 1690
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 2 cut(s) 868, 1123
Eco57I CTGAAG 2 cut(s) 138, 1623
Eco72I CACGTG 1 cut(s) 1403
Eco88I CYCGRG 1 cut(s) 132
EcoO109I RGGNCCY 1 cut(s) 1004
EcoRI GAATTC 1 cut(s) 265
EcoRII CCWGG 2 cut(s) 535, 1782
EcoT22I ATGCAT 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 84
FaqI GGGAC 2 cut(s) 430, 465
FauI CCCGC 2 cut(s) 1103, 1453
FauNDI CATATG 2 cut(s) 586, 989
FbaI TGATCA 2 cut(s) 1587, 1639
Fnu4HI GCNGC 6 cut(s) 303, 306, 516, 633, 747, 1802
FokI GGATG 6 cut(s) 114, 260, 543, 1191, 1428, 1434
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 6 cut(s) 303, 306, 516, 633, 747, 1802
FspBI CTAG 4 cut(s) 203, 320, 717, 1046
GlaI GCGC 3 cut(s) 607, 745, 1721
GluI GCNGC 6 cut(s) 303, 306, 516, 633, 747, 1802
GsuI CTGGAG 1 cut(s) 861
HaeII RGCGCY 2 cut(s) 609, 1723
HaeIII GGCC 3 cut(s) 29, 1005, 1690
HapII CCGG 1 cut(s) 242
HhaI GCGC 3 cut(s) 608, 746, 1722
Hin6I GCGC 3 cut(s) 606, 744, 1720
HinP1I GCGC 3 cut(s) 606, 744, 1720
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HindIII AAGCTT 2 cut(s) 1319, 1605
HinfI GANTC 2 cut(s) 140, 671
HpaII CCGG 1 cut(s) 242
HphI GGTGA 3 cut(s) 76, 248, 302
Hpy166II GTNNAC 5 cut(s) 395, 466, 565, 776, 1676
Hpy8I GTNNAC 5 cut(s) 395, 466, 565, 776, 1676
Hpy99I CGWCG 3 cut(s) 212, 666, 1370
HpyAV CCTTC 6 cut(s) 71, 113, 166, 227, 858, 1472
HpyCH4III ACNGT 3 cut(s) 212, 259, 478
HpyCH4IV ACGT 5 cut(s) 328, 661, 778, 1168, 1402
HpyF10VI GCNNNNNNNGC 5 cut(s) 488, 605, 1454, 1745, 1801
HpyF3I CTNAG 6 cut(s) 24, 648, 692, 897, 1109, 1685
HpySE526I ACGT 5 cut(s) 328, 661, 778, 1168, 1402
HspAI GCGC 3 cut(s) 606, 744, 1720
Kpn2I TCCGGA 1 cut(s) 241
Ksp22I TGATCA 2 cut(s) 1587, 1639
LmnI GCTCC 1 cut(s) 926
Lsp1109I GCAGC 4 cut(s) 314, 317, 619, 733
LweI GCATC 7 cut(s) 58, 238, 492, 500, 688, 1029, 1627
MaeI CTAG 4 cut(s) 203, 320, 717, 1046
MaeII ACGT 5 cut(s) 328, 661, 778, 1168, 1402
MaeIII GTNAC 6 cut(s) 614, 730, 779, 1252, 1562, 1741
MfeI CAATTG 1 cut(s) 525
MflI RGATCY 4 cut(s) 280, 1144, 1190, 1435
MhlI GDGCHC 5 cut(s) 45, 84, 1000, 1459, 1797
Mph1103I ATGCAT 1 cut(s) 51
MroI TCCGGA 1 cut(s) 241
MseI TTAA 4 cut(s) 753, 1323, 1716, 1731
MslI CAYNNNNRTG 3 cut(s) 89, 376, 570
MspA1I CMGCKG 1 cut(s) 1752
MspCI CTTAAG 1 cut(s) 1715
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 2 cut(s) 537, 1784
MunI CAATTG 1 cut(s) 525
MvaI CCWGG 2 cut(s) 537, 1784
MwoI GCNNNNNNNGC 5 cut(s) 488, 605, 1454, 1745, 1801
NdeI CATATG 2 cut(s) 586, 989
NlaIV GGNNCC 5 cut(s) 214, 869, 1124, 1248, 1437
NmeAIII GCCGAG 1 cut(s) 191
NmuCI GTSAC 3 cut(s) 730, 1562, 1741
NsiI ATGCAT 1 cut(s) 51
NspI RCATGY 2 cut(s) 49, 1260
PagI TCATGA 1 cut(s) 1483
PceI AGGCCT 2 cut(s) 29, 1690
PfeI GAWTC 2 cut(s) 140, 671
PflFI GACNNNGTC 1 cut(s) 1226
PkrI GCNGC 6 cut(s) 304, 307, 517, 634, 748, 1803
PmaCI CACGTG 1 cut(s) 1403
PmlI CACGTG 1 cut(s) 1403
Ppu21I YACGTR 2 cut(s) 1169, 1403
PshAI GACNNNNGTC 1 cut(s) 1628
Psp6I CCWGG 2 cut(s) 535, 1782
PspCI CACGTG 1 cut(s) 1403
PspGI CCWGG 2 cut(s) 535, 1782
PspN4I GGNNCC 5 cut(s) 214, 869, 1124, 1248, 1437
PspPI GGNCC 3 cut(s) 868, 1004, 1123
PstI CTGCAG 1 cut(s) 751
PsuI RGATCY 4 cut(s) 280, 1144, 1190, 1435
PsyI GACNNNGTC 1 cut(s) 1226
PvuII CAGCTG 1 cut(s) 1752
RsaI GTAC 4 cut(s) 22, 396, 832, 1396
RsaNI GTAC 4 cut(s) 21, 395, 831, 1395
RseI CAYNNNNRTG 3 cut(s) 89, 376, 570
SaqAI TTAA 4 cut(s) 753, 1323, 1716, 1731
SatI GCNGC 6 cut(s) 303, 306, 516, 633, 747, 1802
Sau96I GGNCC 3 cut(s) 868, 1004, 1123
ScrFI CCNGG 2 cut(s) 537, 1784
SduI GDGCHC 5 cut(s) 45, 84, 1000, 1459, 1797
SfaNI GCATC 7 cut(s) 58, 238, 492, 500, 688, 1029, 1627
SfcI CTRYAG 1 cut(s) 747
SinI GGWCC 2 cut(s) 868, 1123
SmiMI CAYNNNNRTG 3 cut(s) 89, 376, 570
SmlI CTYRAG 4 cut(s) 356, 999, 1657, 1715
SmoI CTYRAG 4 cut(s) 356, 999, 1657, 1715
SseBI AGGCCT 2 cut(s) 29, 1690
SsiI CCGC 5 cut(s) 482, 516, 1096, 1446, 1524
SspI AATATT 1 cut(s) 757
SspMI CTAG 4 cut(s) 203, 320, 717, 1046
StuI AGGCCT 2 cut(s) 29, 1690
StyD4I CCNGG 2 cut(s) 535, 1782
TaaI ACNGT 3 cut(s) 212, 259, 478
TaiI ACGT 5 cut(s) 331, 664, 781, 1171, 1405
TaqI TCGA 5 cut(s) 336, 387, 807, 1368, 1775
TatI WGTACW 3 cut(s) 20, 394, 830
TauI GCSGC 1 cut(s) 518
TfiI GAWTC 2 cut(s) 140, 671
Tru1I TTAA 4 cut(s) 753, 1323, 1716, 1731
Tru9I TTAA 4 cut(s) 753, 1323, 1716, 1731
TscAI CASTG 4 cut(s) 1086, 1455, 1597, 1750
TseFI GTSAC 3 cut(s) 730, 1562, 1741
TseI GCWGC 5 cut(s) 302, 305, 632, 746, 1801
Tsp45I GTSAC 3 cut(s) 730, 1562, 1741
TspDTI ATGAA 6 cut(s) 90, 120, 246, 353, 573, 1317
TspGWI ACGGA 2 cut(s) 1253, 1328
TspRI CASTG 4 cut(s) 1086, 1455, 1597, 1750
Tth111I GACNNNGTC 1 cut(s) 1226
Vha464I CTTAAG 1 cut(s) 1715
VpaK11BI GGWCC 2 cut(s) 868, 1123
XapI RAATTY 4 cut(s) 265, 531, 905, 1053
XbaI TCTAGA 1 cut(s) 716
XceI RCATGY 2 cut(s) 49, 1260
XcmI CCANNNNNNNNNTGG 1 cut(s) 1540
XspI CTAG 4 cut(s) 203, 320, 717, 1046
Zsp2I ATGCAT 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.