Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004820

Physical Location & Seq

Genomic Coordinates Forward (+)

37177396 .. 37196695

Gene Structure 19300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G028000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3381 bp

ATGGGCGATCCTCTGGACAGACTTGAATCAGAGGACGCCGGAGGATCCAGCCTGAAGGACGACGAACTCTGCATGGAGATCGACCCGCCTTTCAGAGAAAGCACCGCCACGACCGAGGACTGGCGGAAGGCGCTTGCCAACGTCGTCCCCGCCGTCGTCGTTTTGAGGACCACGGCGTGTCGTGCCTTCGATACTGAAGCCGCCGGTGCTAGCTATGCCACCGGCTTTGTCGTCGATAAGCGCCGCGGGATCATCCTCACCAACCGCCATGTTGTCAAGCCTGGACCTGTAGTTGCGGAAGCTATGTTTGTCAATCGCGAAGAAGTTCCAGTATATCCTATCTATAGGGATCCGGTTCATGATTTTGGCTTCTTTTGTTATGATCCTGGTGCAATACAGTTTCTGAAGTATGAAGAGATTCCTCTTGCCCCTGAGGCTGCTTCTGTTGGATTAGAAATCAGGGTTGTTGGTAACGATAGTGGTGAGAAGGTCTCCATTTTGGCTGGTACTCTTGCCCGTTTAGATAGAGATGCTCCTTATTACAAAAAGGATGGCTATAATGATTTCAATACATTCTACATGCAAGCTGCATCTGGTACCAAAGGTGGGTCTAGTGGCTCTCCGGTGATTGATTGGCTAGGTAGGGCAGTGGCTTTGAATGCTGGTAGCAAGTCATCAAGTGCATCAGCATTTTTTTTACCATTGGAACGAGTTGTGAGGGCATTGAAGTTTCTCCAAAATGGCAGAGATTCTTTTGTCAAAAAATGGGAGGCAGTTTCTATACTGCGTGGTACGCTTCAGGTAACTTTTGTCCACAAAGGATTTGATGAGACACGGCGACTTGGTCTTCGAAGTGAGACGGAGCAGAGGGTTCGACATGCGTCTCCGCAGGGTGAAACTGGAATGCTTGTTGTTGAATCTGTGGTGCCAGGTGGTCCAGCTCATAAGTGTTTGGAGCCAGGTGATGTTCTTGTTTGCCTGAATGGGGAAGTAATTACCCAATTTCTAAAAATGGAGACATTACTTGATGATAGTGTGAATCAAAAAATTGAAATACAGATCGAAAGGGGTGGCACACCATTTACTGTGAACTTGCTGGTGCAGGATTTGCACTCAATAACCCCTAATTACTTCTTAGAAGTAAGTGGTGCAGTGATACACCCTCTCTCATATCAACAGGCTAGAAATTTTCGCTTCCAGTGTGGCCTTGTGTATGTGGCAGAGCCAGGATATATGCTCTTTAGAGCTGGAGTTCCTCGTCATGCTATCATTAAGAAGTTTGCTGGACAGGAAATATCACTACTTGAGGATCTAATTTCAGTGCTATGCAAGCTATCTCGGGGTGCTCGAGTGCCGTTAGAGTATATAAGCTATGCAGATCGTCATCGGAGGAAGTCAGTCCTGGTCACCGTTGATCGCCATGAATGGTATGCCCCTCCACAGATATACACTCGTGATGATAGTACTGGTCTTTGGACTGTCAAGCCTGCTTTTCAGCCTGATGCTGGTCTACTTTCATCTGGTATCAATGATCTTGGTGCTATAAGAAGTGATGCAGTTCCTCTATGTACTGAGGCCTCTTCTGTTGGGCACATGCACCGTAATAGCCATGCAGAATTGAATGAAGGGGTCACCAGTATGGAAACCAGTTATGAACATTCTTCTGAAGGAGGACATCCTCGGGCTAAATCTGATGTTGAAACAAAGAAACGCCGAGTGAAGGAGGATTTTTCTTCTGATGGAAATGTCGTAGCCGACGGTTCCTTTCTTGAAACAGATGAAGGTGATCCGGAGGATGCAAATACTGTGGAGAATTCTGTTATGAGAGATCTTCAAGGTGAAAATGTAGCAGCAGCTAATTCTTCACTAGCTGAACGTATTATCGAGCCAACTCTTGTTATGCTTGAGGTTCATGTGCCACCATCATGTATGCTCGATGGTGTACATTCACAACATTTTTTTGGGACTGGTGTTATTATATACCACTCTCAAAATATGGGACTGATTGCTGTTGACAAGAATACAGTTGCGGTATCTGCATCTGATGTGATGCTCTCATTCGCCGCATTTCCAATTGAAATTCCAGGGGAGGTGGTTTTTCTCCATCCCGTTCACAATTATGCTCTCATTTCATATGATCCATTGGCTCTGGGCGCTGTTGGTATCTCGCTTGTTCGGGCTGCGAAACTACTTCCTGAGCCTGATATACGTCGCGGGGATTCTGTGCATCTTGTTGGGCTAAGTAGAAGCCTACAAGCAACATCTAGAAAGTCTATTGTGACCAACCCATGCGCTGCAGTAAATATTAGCTCCGCTGATTGTCCACGTTACAGAGCAACCAATATGGAAGTTATCGAGCTTGATACTGATTTTGGCAGTACATTCTCTGGAGTGCTAACTGATGAGCATGGAAGGGTCCGAGCTATTTGGGGTAGCTTTTCAACTCAGGTGCATACTTTTCTCCTCGGCAAAAAAAAGAAAAAGAGAAGTAAGAAAAAATTCAGTAGCTCCGAAGATCATCAATTTGTAAGAGGTATCCCAATATATACAATCAGTCAAGTCCTTGAACAAATCATATGTGGTGCTCAAGGCCCTCCTCTTCTCATAAATTGTGTCAAAAGGACGATGCCTCTAGTTAGAATTTTGGAGGTTGAACTATATCCTACACTGCTTTCAAAAGCCCGCAGTTTTGGACTGAGTGATGATTGGGTCCAAGCACTTGTCAAGAAAGATCCGATTAGACGACAGGTTTTACGTGTGAAAGGATGCTTAGCTGGATCTAAAGCCGAAAATCTGTTAGAACAAGGAGACATGGTCTTGGCAATCAATAAGGAACCAGTTACATGCTTCCGTGATGTAGAAAATGCCTGTCAAGAATTGGGAAAACATGAAAACAAAGATGGAAAGCTTAACATGACCATATTCCGTCAGGGGCATGAGATTGATGTTCTCGTCGAAACAGATATTAGAGATGGGAGTGGTACTACACGTGTAATAAATTGGTGTGGATGTATTGTTCAGGATCCCCATCCTGCAGTGCGTGCTCTTGGATTTCTTCCAGAAGAAGGTCATGGTGTTTATGTGGCAAGGTGGTGTCATGGTAGCCCAGCGCATAGATATGGACTGTATGCTCTTCAGTGGATTGTTGAAGTTAATGGAAAACAGATTCCTGATTTAGATGCTTTTTTGAATGTCGCAAAGGAAATAGAACATGGAGAGTTTGTTCGTGTACGGACCATCCACCTAAATGGAAAACCTAAAGTTTTAACGTTGAAGCAGGACTTGCACTACTGGCCTACATGGGAGGTCAGATTTGATCCTGATTCTGCTATATGGCATCGAAACACAATTAAGGCACTAGACTATAGTTCTAATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009642 GO:0009644 GO:0009892 GO:0010109 GO:0010205 GO:0016787 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0042548 GO:0043155 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0140096 GO:1901564 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_1 PDZ_2 Trypsin_2

Protein Analysis

1126

Amino Acids

124.4

Weight (kDa)

6.07

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin_2	PF13365	73 - 219	8.9e-21	Trypsin-like peptidase domain
PDZ_6	PF17820	304 - 356	5.1e-08	PDZ domain
PDZ_1	PF12812	372 - 445	1.5e-14	PDZ-like domain
PDZ_1	PF12812	995 - 1070	1.4e-07	PDZ-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03380 AT3G03380
fragaria_vesca	FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890 FvH4_5g27890
malus_domestica	MD17G1256700.v1.1
prunus_persica	Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1 Prupe.3G159400_v2.0.a1
pyrus_communis	pycom17g25890
rosa_chinensis	RchiOBHm_Chr7g0220101
rosa_laevigata	RLG00000002258
rosa_multiflora	Rmu_sc0007553.1_g000006 Rmu_sc0018981.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239790
rosa_rugosa	Rorug07G0188800 Rorug07G0188900 Rorug07G0188900 Rorug07G0189000
rosa_samantha	Rh7AG332500 Rh7BG322400 Rh7CG350000 Rh7DG328200
rosa_wichuraiana	Rw7G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	596
AccB1I	GGYRCC	2 cut(s)	596, 925
AccI	GTMKAC	1 cut(s)	1510
AccII	CGCG	3 cut(s)	246, 318, 2214
AccIII	TCCGGA	1 cut(s)	1789
AclI	AACGTT	1 cut(s)	3269
AcsI	RAATTY	5 cut(s)	1186, 1813, 2079, 2498, 2640
AcuI	CTGAAG	6 cut(s)	74, 216, 425, 782, 1686, 3119
AcvI	CACGTG	1 cut(s)	2990
AcyI	GRCGYC	1 cut(s)	36
AdeI	CACNNNGTG	1 cut(s)	177
AfaI	GTAC	9 cut(s)	508, 598, 793, 1465, 1570, 1944, 2380, 2983, 3231
AfiI	CCNNNNNNNGG	6 cut(s)	120, 606, 985, 1505, 1720, 3065
AflIII	ACRYGT	3 cut(s)	2755, 2987, 2989
AjnI	CCWGG	7 cut(s)	280, 385, 928, 958, 1225, 1401, 2083
AloI	GAACNNNNNNTCC	4 cut(s)	3000, 3032, 3207, 3239
Alw21I	GWGCWC	3 cut(s)	1348, 2587, 3046
Alw26I	GTCTC	6 cut(s)	496, 824, 851, 888, 1010, 2802
AlwNI	CAGNNNCTG	1 cut(s)	403
Ama87I	CYCGRG	3 cut(s)	1338, 1347, 1680
Aor13HI	TCCGGA	1 cut(s)	1789
AoxI	GGCC	4 cut(s)	1204, 1575, 2590, 3293
ApeKI	GCWGC	6 cut(s)	437, 587, 1850, 1853, 2180, 2294
ApoI	RAATTY	5 cut(s)	1186, 1813, 2079, 2498, 2640
ArsI	GACNNNNNNTTYG	2 cut(s)	831, 863
Asp700I	GAANNNNTTC	3 cut(s)	324, 417, 2498
Asp718I	GGTACC	1 cut(s)	596
AspLEI	GCGC	5 cut(s)	133, 243, 2156, 2294, 3112
AspS9I	GGNCC	7 cut(s)	168, 284, 935, 2416, 2591, 2710, 3234
AsuHPI	GGTGA	9 cut(s)	250, 494, 637, 905, 974, 1399, 1624, 1796, 1850
AsuII	TTCGAA	1 cut(s)	850
AsuNHI	GCTAGC	1 cut(s)	209
AvaI	CYCGRG	3 cut(s)	1338, 1347, 1680
AvaII	GGWCC	6 cut(s)	168, 284, 935, 2416, 2710, 3234
AxyI	CCTNAGG	1 cut(s)	432
BaeGI	GKGCMC	1 cut(s)	1593
BamHI	GGATCC	3 cut(s)	44, 349, 3022
BanI	GGYRCC	2 cut(s)	596, 925
BauI	CACGAG	1 cut(s)	1452
BbrPI	CACGTG	1 cut(s)	2990
BbsI	GAAGAC	1 cut(s)	839
Bbv12I	GWGCWC	3 cut(s)	1348, 2587, 3046
BbvI	GCAGC	6 cut(s)	424, 574, 1862, 1865, 2167, 2281
BccI	CCATC	9 cut(s)	545, 1733, 1930, 1931, 2112, 2894, 2966, 3036, 3245
BceAI	ACGGC	4 cut(s)	137, 189, 851, 1339
BcgI	CGANNNNNNTGC	4 cut(s)	61, 95, 854, 888
BciT130I	CCWGG	7 cut(s)	282, 387, 930, 960, 1227, 1403, 2085
BciVI	GTATCC	1 cut(s)	2546
BcoDI	GTCTC	6 cut(s)	496, 824, 851, 888, 1010, 2802
BfaI	CTAG	8 cut(s)	210, 612, 638, 1182, 1868, 2265, 2633, 3359
BfmI	CTRYAG	5 cut(s)	288, 343, 2295, 3033, 3364
BfoI	RGCGCY	3 cut(s)	134, 244, 2157
BfuI	GTATCC	1 cut(s)	2546
BglI	GCCNNNNNGGC	1 cut(s)	434
BglII	AGATCT	1 cut(s)	1828
BisI	GCNGC	9 cut(s)	201, 244, 438, 588, 1851, 1854, 2064, 2181, 2295
BlpI	GCTNAGC	1 cut(s)	2770
BlsI	GCNGC	9 cut(s)	202, 245, 439, 589, 1852, 1855, 2065, 2182, 2296
BmcAI	AGTACT	1 cut(s)	1465
Bme1390I	CCNGG	7 cut(s)	282, 387, 930, 960, 1227, 1403, 2085
Bme18I	GGWCC	6 cut(s)	168, 284, 935, 2416, 2710, 3234
BmeT110I	CYCGRG	3 cut(s)	1338, 1347, 1680
BmgT120I	GGNCC	7 cut(s)	168, 284, 935, 2416, 2591, 2710, 3234
BmrFI	CCNGG	7 cut(s)	282, 387, 930, 960, 1227, 1403, 2085
BmtI	GCTAGC	1 cut(s)	213
BoxI	GACNNNNGTC	1 cut(s)	880
BpiI	GAAGAC	1 cut(s)	839
BplI	GAGNNNNNCTC	2 cut(s)	476, 508
BpmI	CTGGAG	2 cut(s)	1269, 2409
Bpu10I	CCTNAGC	1 cut(s)	2196
Bpu1102I	GCTNAGC	1 cut(s)	2770
Bpu14I	TTCGAA	1 cut(s)	850
BpuEI	CTTGAG	3 cut(s)	1325, 1925, 2571
BsaAI	YACGTR	2 cut(s)	2756, 2990
BsaBI	GATNNNNATC	2 cut(s)	1383, 3027
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	496
BsaJI	CCNNGG	6 cut(s)	114, 171, 244, 1679, 2084, 2464
BsaWI	WCCGGW	3 cut(s)	352, 622, 1789
BsaXI	ACNNNNNCTCC	4 cut(s)	2799, 2829, 3207, 3237
Bsc4I	CCNNNNNNNGG	6 cut(s)	120, 606, 985, 1505, 1720, 3065
Bse118I	RCCGGY	2 cut(s)	203, 221
Bse21I	CCTNAGG	1 cut(s)	432
Bse8I	GATNNNNATC	2 cut(s)	1383, 3027
BseAI	TCCGGA	1 cut(s)	1789
BseBI	CCWGG	7 cut(s)	282, 387, 930, 960, 1227, 1403, 2085
BseDI	CCNNGG	6 cut(s)	114, 171, 244, 1679, 2084, 2464
BseGI	GGATG	9 cut(s)	252, 556, 1675, 1801, 2104, 2771, 3014, 3028, 3237
BseJI	GATNNNNATC	2 cut(s)	1383, 3027
BseLI	CCNNNNNNNGG	6 cut(s)	120, 606, 985, 1505, 1720, 3065
BseMII	CTCAG	5 cut(s)	423, 1563, 2187, 2459, 2687
BseRI	GAGGAG	2 cut(s)	2453, 2586
BseSI	GKGCMC	1 cut(s)	1593
BseXI	GCAGC	6 cut(s)	424, 574, 1862, 1865, 2167, 2281
BseYI	CCCAGC	1 cut(s)	3106
BsgI	GTGCAG	2 cut(s)	1121, 1170
Bsh1236I	CGCG	3 cut(s)	246, 318, 2214
Bsh1285I	CGRYCG	1 cut(s)	114
BshFI	GGCC	4 cut(s)	1206, 1577, 2592, 3295
BshNI	GGYRCC	2 cut(s)	596, 925
BsiEI	CGRYCG	1 cut(s)	114
BsiHKAI	GWGCWC	3 cut(s)	1348, 2587, 3046
BsiHKCI	CYCGRG	3 cut(s)	1338, 1347, 1680
BsiSI	CCGG	6 cut(s)	39, 204, 222, 353, 623, 1790
BslFI	GGGAC	3 cut(s)	131, 1978, 2013
BslI	CCNNNNNNNGG	6 cut(s)	120, 606, 985, 1505, 1720, 3065
BsmAI	GTCTC	6 cut(s)	496, 824, 851, 888, 1010, 2802
BsmBI	CGTCTC	2 cut(s)	851, 888
BsmFI	GGGAC	3 cut(s)	131, 1978, 2013
BsmI	GAATGC	2 cut(s)	664, 909
BsnI	GGCC	4 cut(s)	1206, 1577, 2592, 3295
Bso31I	GGTCTC	1 cut(s)	496
BsoBI	CYCGRG	3 cut(s)	1338, 1347, 1680
Bsp119I	TTCGAA	1 cut(s)	850
Bsp1286I	GDGCHC	4 cut(s)	1348, 1593, 2587, 3046
Bsp13I	TCCGGA	1 cut(s)	1789
Bsp1407I	TGTACA	1 cut(s)	1942
Bsp1720I	GCTNAGC	1 cut(s)	2770
Bsp68I	TCGCGA	1 cut(s)	318
BspANI	GGCC	4 cut(s)	1206, 1577, 2592, 3295
BspCNI	CTCAG	5 cut(s)	424, 1564, 2188, 2458, 2688
BspEI	TCCGGA	1 cut(s)	1789
BspFNI	CGCG	3 cut(s)	246, 318, 2214
BspHI	TCATGA	1 cut(s)	358
BspMAI	CTGCAG	2 cut(s)	2299, 3037
BspOI	GCTAGC	1 cut(s)	213
BspQI	GCTCTTC	1 cut(s)	3138
BspT104I	TTCGAA	1 cut(s)	850
BspT107I	GGYRCC	2 cut(s)	596, 925
BspTNI	GGTCTC	1 cut(s)	496
BsrFI	RCCGGY	2 cut(s)	203, 221
BsrGI	TGTACA	1 cut(s)	1942
BssAI	RCCGGY	2 cut(s)	203, 221
BssECI	CCNNGG	6 cut(s)	114, 171, 244, 1679, 2084, 2464
BssNI	GRCGYC	1 cut(s)	36
BssSI	CACGAG	1 cut(s)	1452
Bst2BI	CACGAG	1 cut(s)	1452
Bst2UI	CCWGG	7 cut(s)	282, 387, 930, 960, 1227, 1403, 2085
Bst4CI	ACNGT	9 cut(s)	399, 1087, 1411, 1480, 1601, 1760, 1807, 2026, 3126
Bst6I	CTCTTC	4 cut(s)	408, 1585, 2604, 3138
BstACI	GRCGYC	1 cut(s)	36
BstAPI	GCANNNNNTGC	3 cut(s)	1108, 3041, 3283
BstAUI	TGTACA	1 cut(s)	1942
BstBAI	YACGTR	2 cut(s)	2756, 2990
BstBI	TTCGAA	1 cut(s)	850
BstC8I	GCNNGC	7 cut(s)	135, 211, 585, 1331, 1488, 2683, 3042
BstDEI	CTNAG	8 cut(s)	432, 1135, 1572, 2196, 2240, 2445, 2696, 2770
BstDSI	CCRYGG	2 cut(s)	171, 244
BstEII	GGTNACC	2 cut(s)	1405, 1630
BstF5I	GGATG	9 cut(s)	252, 556, 1675, 1801, 2104, 2771, 3014, 3028, 3237
BstFNI	CGCG	3 cut(s)	246, 318, 2214
BstH2I	RGCGCY	3 cut(s)	134, 244, 2157
BstHHI	GCGC	5 cut(s)	133, 243, 2156, 2294, 3112
BstMAI	GTCTC	6 cut(s)	496, 824, 851, 888, 1010, 2802
BstMCI	CGRYCG	1 cut(s)	114
BstNI	CCWGG	7 cut(s)	282, 387, 930, 960, 1227, 1403, 2085
BstNSI	RCATGY	4 cut(s)	583, 881, 1597, 2847
BstPAI	GACNNNNGTC	1 cut(s)	880
BstPI	GGTNACC	2 cut(s)	1405, 1630
BstSCI	CCNGG	7 cut(s)	280, 385, 928, 958, 1225, 1401, 2083
BstSFI	CTRYAG	5 cut(s)	288, 343, 2295, 3033, 3364
BstSLI	GKGCMC	1 cut(s)	1593
BstUI	CGCG	3 cut(s)	246, 318, 2214
BstV1I	GCAGC	6 cut(s)	424, 574, 1862, 1865, 2167, 2281
BstV2I	GAAGAC	1 cut(s)	839
BstX2I	RGATCY	7 cut(s)	44, 349, 1309, 1828, 2731, 2777, 3022
BstXI	CCANNNNNNTGG	1 cut(s)	3248
BstYI	RGATCY	7 cut(s)	44, 349, 1309, 1828, 2731, 2777, 3022
Bsu36I	CCTNAGG	1 cut(s)	432
BsuI	GTATCC	1 cut(s)	2546
BsuRI	GGCC	4 cut(s)	1206, 1577, 2592, 3295
BtgI	CCRYGG	2 cut(s)	171, 244
BtsCI	GGATG	9 cut(s)	252, 556, 1675, 1801, 2104, 2771, 3014, 3028, 3237
BtsI	GCAGTG	4 cut(s)	654, 1158, 2666, 3042
BtsIMutI	CAGTG	7 cut(s)	654, 1158, 1205, 1326, 2666, 3042, 3143
BtuMI	TCGCGA	1 cut(s)	318
Cac8I	GCNNGC	7 cut(s)	135, 211, 585, 1331, 1488, 2683, 3042
CaiI	CAGNNNCTG	1 cut(s)	403
CciI	TCATGA	1 cut(s)	358
CfoI	GCGC	5 cut(s)	133, 243, 2156, 2294, 3112
Cfr10I	RCCGGY	2 cut(s)	203, 221
Cfr13I	GGNCC	7 cut(s)	168, 284, 935, 2416, 2591, 2710, 3234
Cfr42I	CCGCGG	1 cut(s)	247
CseI	GACGC	2 cut(s)	44, 870
Csp6I	GTAC	9 cut(s)	507, 597, 792, 1464, 1569, 1943, 2379, 2982, 3230
CspCI	CAANNNNNGTGG	4 cut(s)	208, 243, 1788, 1823
CviQI	GTAC	9 cut(s)	507, 597, 792, 1464, 1569, 1943, 2379, 2982, 3230
DdeI	CTNAG	8 cut(s)	432, 1135, 1572, 2196, 2240, 2445, 2696, 2770
DraIII	CACNNNGTG	1 cut(s)	177
Eam1104I	CTCTTC	4 cut(s)	408, 1585, 2604, 3138
EarI	CTCTTC	4 cut(s)	408, 1585, 2604, 3138
EciI	GGCGGA	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	1577
Eco31I	GGTCTC	1 cut(s)	496
Eco47I	GGWCC	6 cut(s)	168, 284, 935, 2416, 2710, 3234
Eco57I	CTGAAG	6 cut(s)	74, 216, 425, 782, 1686, 3119
Eco72I	CACGTG	1 cut(s)	2990
Eco81I	CCTNAGG	1 cut(s)	432
Eco88I	CYCGRG	3 cut(s)	1338, 1347, 1680
Eco91I	GGTNACC	2 cut(s)	1405, 1630
EcoO109I	RGGNCCY	1 cut(s)	2591
EcoO65I	GGTNACC	2 cut(s)	1405, 1630
EcoRI	GAATTC	1 cut(s)	1813
EcoRII	CCWGG	7 cut(s)	280, 385, 928, 958, 1225, 1401, 2083
Esp3I	CGTCTC	2 cut(s)	851, 888
FalI	AAGNNNNNCTT	2 cut(s)	3266, 3298
FaqI	GGGAC	3 cut(s)	131, 1978, 2013
FauI	CCCGC	5 cut(s)	93, 157, 239, 2207, 2690
FauNDI	CATATG	2 cut(s)	2134, 2576
FblI	GTMKAC	1 cut(s)	1510
Fnu4HI	GCNGC	9 cut(s)	201, 244, 438, 588, 1851, 1854, 2064, 2181, 2295
FokI	GGATG	9 cut(s)	239, 563, 1662, 1808, 2091, 2778, 3015, 3021, 3224
Fsp4HI	GCNGC	9 cut(s)	201, 244, 438, 588, 1851, 1854, 2064, 2181, 2295
FspBI	CTAG	8 cut(s)	210, 612, 638, 1182, 1868, 2265, 2633, 3359
GlaI	GCGC	5 cut(s)	132, 242, 2155, 2293, 3111
GluI	GCNGC	9 cut(s)	201, 244, 438, 588, 1851, 1854, 2064, 2181, 2295
GsaI	CCCAGC	1 cut(s)	3110
GsuI	CTGGAG	2 cut(s)	1269, 2409
HaeII	RGCGCY	3 cut(s)	134, 244, 2157
HaeIII	GGCC	4 cut(s)	1206, 1577, 2592, 3295
HapII	CCGG	6 cut(s)	39, 204, 222, 353, 623, 1790
HgaI	GACGC	2 cut(s)	44, 870
HhaI	GCGC	5 cut(s)	133, 243, 2156, 2294, 3112
Hin1I	GRCGYC	1 cut(s)	36
Hin6I	GCGC	5 cut(s)	131, 241, 2154, 2292, 3110
HinP1I	GCGC	5 cut(s)	131, 241, 2154, 2292, 3110
HincII	GTYRAC	1 cut(s)	2014
HindII	GTYRAC	1 cut(s)	2014
HindIII	AAGCTT	1 cut(s)	2906
HinfI	GANTC	8 cut(s)	26, 418, 749, 917, 1039, 2219, 3166, 3323
HpaII	CCGG	6 cut(s)	39, 204, 222, 353, 623, 1790
HphI	GGTGA	9 cut(s)	250, 494, 637, 905, 974, 1399, 1624, 1796, 1850
Hpy166II	GTNNAC	8 cut(s)	814, 1090, 1511, 1943, 2014, 2113, 2324, 3230
Hpy8I	GTNNAC	8 cut(s)	814, 1090, 1511, 1943, 2014, 2113, 2324, 3230
Hpy99I	CGWCG	8 cut(s)	65, 146, 158, 161, 236, 1760, 2214, 2957
HpyCH4III	ACNGT	9 cut(s)	399, 1087, 1411, 1480, 1601, 1760, 1807, 2026, 3126
HpyCH4IV	ACGT	7 cut(s)	141, 1876, 2209, 2326, 2755, 2989, 3269
HpyF3I	CTNAG	8 cut(s)	432, 1135, 1572, 2196, 2240, 2445, 2696, 2770
HpySE526I	ACGT	7 cut(s)	141, 1876, 2209, 2326, 2755, 2989, 3269
Hsp92I	GRCGYC	1 cut(s)	36
HspAI	GCGC	5 cut(s)	131, 241, 2154, 2292, 3110
Kpn2I	TCCGGA	1 cut(s)	1789
KpnI	GGTACC	1 cut(s)	600
KspI	CCGCGG	1 cut(s)	247
LguI	GCTCTTC	1 cut(s)	3138
LmnI	GCTCC	5 cut(s)	538, 862, 955, 2315, 2513
Lsp1109I	GCAGC	6 cut(s)	424, 574, 1862, 1865, 2167, 2281
MaeI	CTAG	8 cut(s)	210, 612, 638, 1182, 1868, 2265, 2633, 3359
MaeII	ACGT	7 cut(s)	141, 1876, 2209, 2326, 2755, 2989, 3269
MaeIII	GTNAC	7 cut(s)	470, 802, 1405, 1630, 2278, 2327, 2839
MfeI	CAATTG	1 cut(s)	2073
MflI	RGATCY	7 cut(s)	44, 349, 1309, 1828, 2731, 2777, 3022
MhlI	GDGCHC	4 cut(s)	1348, 1593, 2587, 3046
MmeI	TCCRAC	1 cut(s)	427
MroI	TCCGGA	1 cut(s)	1789
MroXI	GAANNNNTTC	3 cut(s)	324, 417, 2498
MseI	TTAA	5 cut(s)	1272, 2910, 3153, 3266, 3351
MslI	CAYNNNNRTG	5 cut(s)	1637, 1924, 2118, 3117, 3246
MspA1I	CMGCKG	2 cut(s)	246, 2315
MspI	CCGG	6 cut(s)	39, 204, 222, 353, 623, 1790
MspR9I	CCNGG	7 cut(s)	282, 387, 930, 960, 1227, 1403, 2085
MunI	CAATTG	1 cut(s)	2073
Mva1269I	GAATGC	2 cut(s)	664, 909
MvaI	CCWGG	7 cut(s)	282, 387, 930, 960, 1227, 1403, 2085
MvnI	CGCG	3 cut(s)	246, 318, 2214
NdeI	CATATG	2 cut(s)	2134, 2576
NheI	GCTAGC	1 cut(s)	209
NmeAIII	GCCGAG	2 cut(s)	1739, 2445
NmuCI	GTSAC	3 cut(s)	1405, 1630, 2278
NruI	TCGCGA	1 cut(s)	318
NspI	RCATGY	4 cut(s)	583, 881, 1597, 2847
NspV	TTCGAA	1 cut(s)	850
PaeR7I	CTCGAG	1 cut(s)	1347
PagI	TCATGA	1 cut(s)	358
PceI	AGGCCT	1 cut(s)	1577
PciSI	GCTCTTC	1 cut(s)	3138
PcsI	WCGNNNNNNNCGW	2 cut(s)	150, 1345
PctI	GAATGC	2 cut(s)	664, 909
PdmI	GAANNNNTTC	3 cut(s)	324, 417, 2498
PfeI	GAWTC	8 cut(s)	26, 418, 749, 917, 1039, 2219, 3166, 3323
PflFI	GACNNNGTC	2 cut(s)	843, 2813
PkrI	GCNGC	9 cut(s)	202, 245, 439, 589, 1852, 1855, 2065, 2182, 2296
PmaCI	CACGTG	1 cut(s)	2990
PmlI	CACGTG	1 cut(s)	2990
Ppu21I	YACGTR	2 cut(s)	2756, 2990
PshAI	GACNNNNGTC	1 cut(s)	880
Psp1406I	AACGTT	1 cut(s)	3269
Psp6I	CCWGG	7 cut(s)	280, 385, 928, 958, 1225, 1401, 2083
PspCI	CACGTG	1 cut(s)	2990
PspEI	GGTNACC	2 cut(s)	1405, 1630
PspFI	CCCAGC	1 cut(s)	3106
PspGI	CCWGG	7 cut(s)	280, 385, 928, 958, 1225, 1401, 2083
PspPI	GGNCC	7 cut(s)	168, 284, 935, 2416, 2591, 2710, 3234
PspXI	VCTCGAGB	1 cut(s)	1347
PstI	CTGCAG	2 cut(s)	2299, 3037
PstNI	CAGNNNCTG	1 cut(s)	403
PsuI	RGATCY	7 cut(s)	44, 349, 1309, 1828, 2731, 2777, 3022
PsyI	GACNNNGTC	2 cut(s)	843, 2813
RruI	TCGCGA	1 cut(s)	318
RsaI	GTAC	9 cut(s)	508, 598, 793, 1465, 1570, 1944, 2380, 2983, 3231
RsaNI	GTAC	9 cut(s)	507, 597, 792, 1464, 1569, 1943, 2379, 2982, 3230
RseI	CAYNNNNRTG	5 cut(s)	1637, 1924, 2118, 3117, 3246
SacII	CCGCGG	1 cut(s)	247
SapI	GCTCTTC	1 cut(s)	3138
SaqAI	TTAA	5 cut(s)	1272, 2910, 3153, 3266, 3351
SatI	GCNGC	9 cut(s)	201, 244, 438, 588, 1851, 1854, 2064, 2181, 2295
Sau96I	GGNCC	7 cut(s)	168, 284, 935, 2416, 2591, 2710, 3234
ScaI	AGTACT	1 cut(s)	1465
ScrFI	CCNGG	7 cut(s)	282, 387, 930, 960, 1227, 1403, 2085
SduI	GDGCHC	4 cut(s)	1348, 1593, 2587, 3046
SfcI	CTRYAG	5 cut(s)	288, 343, 2295, 3033, 3364
Sfr274I	CTCGAG	1 cut(s)	1347
Sfr303I	CCGCGG	1 cut(s)	247
SfuI	TTCGAA	1 cut(s)	850
SgrAI	CRCCGGYG	1 cut(s)	203
SgrBI	CCGCGG	1 cut(s)	247
SinI	GGWCC	6 cut(s)	168, 284, 935, 2416, 2710, 3234
SlaI	CTCGAG	1 cut(s)	1347
SmiMI	CAYNNNNRTG	5 cut(s)	1637, 1924, 2118, 3117, 3246
SmlI	CTYRAG	4 cut(s)	1304, 1347, 1904, 2586
SmoI	CTYRAG	4 cut(s)	1304, 1347, 1904, 2586
SseBI	AGGCCT	1 cut(s)	1577
SspI	AATATT	1 cut(s)	2305
SspMI	CTAG	8 cut(s)	210, 612, 638, 1182, 1868, 2265, 2633, 3359
StuI	AGGCCT	1 cut(s)	1577
StyD4I	CCNGG	7 cut(s)	280, 385, 928, 958, 1225, 1401, 2083
TaaI	ACNGT	9 cut(s)	399, 1087, 1411, 1480, 1601, 1760, 1807, 2026, 3126
TaiI	ACGT	7 cut(s)	144, 1879, 2212, 2329, 2758, 2992, 3272
TaqII	GACCGA	1 cut(s)	128
TatI	WGTACW	4 cut(s)	1463, 1568, 1942, 2378
TauI	GCSGC	3 cut(s)	203, 246, 2066
TfiI	GAWTC	8 cut(s)	26, 418, 749, 917, 1039, 2219, 3166, 3323
Tru1I	TTAA	5 cut(s)	1272, 2910, 3153, 3266, 3351
Tru9I	TTAA	5 cut(s)	1272, 2910, 3153, 3266, 3351
TscAI	CASTG	7 cut(s)	654, 1158, 1205, 1326, 2673, 3042, 3143
TseFI	GTSAC	3 cut(s)	1405, 1630, 2278
TseI	GCWGC	6 cut(s)	437, 587, 1850, 1853, 2180, 2294
Tsp45I	GTSAC	3 cut(s)	1405, 1630, 2278
TspGWI	ACGGA	4 cut(s)	875, 2840, 2915, 3247
TspRI	CASTG	7 cut(s)	654, 1158, 1205, 1326, 2673, 3042, 3143
Tth111I	GACNNNGTC	2 cut(s)	843, 2813
VpaK11BI	GGWCC	6 cut(s)	168, 284, 935, 2416, 2710, 3234
XapI	RAATTY	5 cut(s)	1186, 1813, 2079, 2498, 2640
XbaI	TCTAGA	1 cut(s)	2264
XceI	RCATGY	4 cut(s)	583, 881, 1597, 2847
XhoI	CTCGAG	1 cut(s)	1347
XmiI	GTMKAC	1 cut(s)	1510
XmnI	GAANNNNTTC	3 cut(s)	324, 417, 2498
XspI	CTAG	8 cut(s)	210, 612, 638, 1182, 1868, 2265, 2633, 3359
ZrmI	AGTACT	1 cut(s)	1465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.